HEADER HYDROLASE/INHIBITOR 31-DEC-20 7L8H TITLE EV68 3C PROTEASE (3CPRO) IN COMPLEX WITH RUPINTRIVIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PEPTIDASE C3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ENTEROVIRUS D68; SOURCE 3 ORGANISM_COMMON: EV68; SOURCE 4 ORGANISM_TAXID: 42789; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENTEROVIRUS, EV68, PROTEASE, PROTEASE INHIBITOR, COMPLEX, HYDROLASE KEYWDS 2 INHIBITOR COMPLEX, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX, KEYWDS 3 RUPINTRIVIR, HYDROLASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.J.LOCKBAUM,M.HENES,J.M.LEE,J.TIMM,E.A.NALIVAIKA,N.K.YILMAZ, AUTHOR 2 P.R.THOMPSON,C.A.SCHIFFER REVDAT 3 18-OCT-23 7L8H 1 REMARK REVDAT 2 13-OCT-21 7L8H 1 JRNL REVDAT 1 22-SEP-21 7L8H 0 JRNL AUTH G.J.LOCKBAUM,M.HENES,J.M.LEE,J.TIMM,E.A.NALIVAIKA, JRNL AUTH 2 P.R.THOMPSON,N.KURT YILMAZ,C.A.SCHIFFER JRNL TITL PAN-3C PROTEASE INHIBITOR RUPINTRIVIR BINDS SARS-COV-2 MAIN JRNL TITL 2 PROTEASE IN A UNIQUE BINDING MODE. JRNL REF BIOCHEMISTRY V. 60 2925 2021 JRNL REFN ISSN 0006-2960 JRNL PMID 34506130 JRNL DOI 10.1021/ACS.BIOCHEM.1C00414 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4080 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.710 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4500 - 4.4700 0.95 2766 143 0.1382 0.1913 REMARK 3 2 4.4600 - 3.5500 0.94 2760 142 0.1471 0.1871 REMARK 3 3 3.5400 - 3.1000 0.94 2747 145 0.1742 0.2187 REMARK 3 4 3.1000 - 2.8100 0.95 2790 139 0.1833 0.2334 REMARK 3 5 2.8100 - 2.6100 0.95 2771 145 0.2004 0.1928 REMARK 3 6 2.6100 - 2.4600 0.95 2769 140 0.2137 0.2553 REMARK 3 7 2.4600 - 2.3400 0.95 2788 142 0.2138 0.2299 REMARK 3 8 2.3400 - 2.2300 0.95 2776 136 0.2212 0.2309 REMARK 3 9 2.2300 - 2.1500 0.95 2756 156 0.2303 0.2161 REMARK 3 10 2.1500 - 2.0700 0.95 2743 148 0.2494 0.2673 REMARK 3 11 2.0700 - 2.0100 0.95 2800 148 0.2732 0.2870 REMARK 3 12 2.0100 - 1.9500 0.94 2767 142 0.3333 0.3532 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.3900 REMARK 3 OPERATOR: H,-H-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2945 REMARK 3 ANGLE : 0.687 4012 REMARK 3 CHIRALITY : 0.048 458 REMARK 3 PLANARITY : 0.004 521 REMARK 3 DIHEDRAL : 8.139 418 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID -4 THROUGH -3 OR REMARK 3 (RESID -2 THROUGH -1 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 0 THROUGH 21 OR (RESID 22 AND (NAME REMARK 3 N OR NAME CA OR NAME C OR NAME O OR NAME REMARK 3 CB )) OR RESID 23 THROUGH 64 OR (RESID 65 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 66 THROUGH 80 OR REMARK 3 (RESID 81 THROUGH 82 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 83 THROUGH 117 OR (RESID 118 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 119 THROUGH 179 OR REMARK 3 (RESID 180 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )))) REMARK 3 SELECTION : (CHAIN B AND (RESID -4 THROUGH 20 OR REMARK 3 (RESID 21 THROUGH 22 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 23 THROUGH 31 OR (RESID 32 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 33 THROUGH 75 OR REMARK 3 (RESID 76 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 77 REMARK 3 THROUGH 81 OR (RESID 82 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 83 THROUGH 91 OR (RESID 92 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 93 THROUGH 111 OR REMARK 3 (RESID 112 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 113 REMARK 3 THROUGH 180)) REMARK 3 ATOM PAIRS NUMBER : 1116 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 16 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7L8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000253883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34962 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07731 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64960 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ZV8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG 3350, 0.1 M BIS-TRIS REMARK 280 -PROPANE PH 6.5, 0.2 M POTASSIUM THIOCYANATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.45000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.35382 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 65.72000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 40.45000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 23.35382 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.72000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 40.45000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 23.35382 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.72000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.70764 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 131.44000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 46.70764 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 131.44000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 46.70764 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 131.44000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ASP A 181 REMARK 465 THR A 182 REMARK 465 GLN A 183 REMARK 465 GLY B -5 REMARK 465 THR B 182 REMARK 465 GLN B 183 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 12 CG CD CE NZ REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 ASP A 32 CG OD1 OD2 REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 ASN A 80 CG OD1 ND2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 MET A 112 CG SD CE REMARK 470 MET B -2 CG SD CE REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LEU B 65 CG CD1 CD2 REMARK 470 ASN B 80 CG OD1 ND2 REMARK 470 GLN B 81 CG CD OE1 NE2 REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 GLN B 118 CG CD OE1 NE2 REMARK 470 SER B 180 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 307 O HOH A 395 2.00 REMARK 500 O HOH B 391 O HOH B 425 2.00 REMARK 500 O HOH B 372 O HOH B 434 2.06 REMARK 500 O HOH B 375 O HOH B 427 2.09 REMARK 500 O HOH B 397 O HOH B 427 2.12 REMARK 500 O GLU B 94 O HOH B 301 2.14 REMARK 500 O HOH B 350 O HOH B 384 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 371 O HOH B 394 3555 2.05 REMARK 500 O HOH A 365 O HOH B 410 3555 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 -118.00 48.59 REMARK 500 ASN A 111 84.90 81.49 REMARK 500 ASP B 32 -117.64 47.83 REMARK 500 SER B 42 70.66 53.96 REMARK 500 ASP B 64 -169.91 -75.93 REMARK 500 ASN B 111 80.61 -175.20 REMARK 500 PRO B 141 74.77 -69.67 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7L8H A 1 183 UNP A0A2K8BQT2_HED68 DBREF2 7L8H A A0A2K8BQT2 1549 1731 DBREF1 7L8H B 1 183 UNP A0A2K8BQT2_HED68 DBREF2 7L8H B A0A2K8BQT2 1549 1731 SEQADV 7L8H GLY A -5 UNP A0A2K8BQT EXPRESSION TAG SEQADV 7L8H SER A -4 UNP A0A2K8BQT EXPRESSION TAG SEQADV 7L8H HIS A -3 UNP A0A2K8BQT EXPRESSION TAG SEQADV 7L8H MET A -2 UNP A0A2K8BQT EXPRESSION TAG SEQADV 7L8H ALA A -1 UNP A0A2K8BQT EXPRESSION TAG SEQADV 7L8H SER A 0 UNP A0A2K8BQT EXPRESSION TAG SEQADV 7L8H GLY B -5 UNP A0A2K8BQT EXPRESSION TAG SEQADV 7L8H SER B -4 UNP A0A2K8BQT EXPRESSION TAG SEQADV 7L8H HIS B -3 UNP A0A2K8BQT EXPRESSION TAG SEQADV 7L8H MET B -2 UNP A0A2K8BQT EXPRESSION TAG SEQADV 7L8H ALA B -1 UNP A0A2K8BQT EXPRESSION TAG SEQADV 7L8H SER B 0 UNP A0A2K8BQT EXPRESSION TAG SEQRES 1 A 189 GLY SER HIS MET ALA SER GLY PRO GLY PHE ASP PHE ALA SEQRES 2 A 189 GLN ALA ILE MET LYS LYS ASN THR VAL ILE ALA ARG THR SEQRES 3 A 189 GLU LYS GLY GLU PHE THR MET LEU GLY VAL TYR ASP ARG SEQRES 4 A 189 VAL ALA VAL ILE PRO THR HIS ALA SER VAL GLY GLU THR SEQRES 5 A 189 ILE TYR ILE ASN ASP VAL GLU THR LYS VAL LEU ASP ALA SEQRES 6 A 189 CYS ALA LEU ARG ASP LEU THR ASP THR ASN LEU GLU ILE SEQRES 7 A 189 THR ILE VAL LYS LEU ASP ARG ASN GLN LYS PHE ARG ASP SEQRES 8 A 189 ILE ARG HIS PHE LEU PRO ARG TYR GLU ASP ASP TYR ASN SEQRES 9 A 189 ASP ALA VAL LEU SER VAL HIS THR SER LYS PHE PRO ASN SEQRES 10 A 189 MET TYR ILE PRO VAL GLY GLN VAL THR ASN TYR GLY PHE SEQRES 11 A 189 LEU ASN LEU GLY GLY THR PRO THR HIS ARG ILE LEU MET SEQRES 12 A 189 TYR ASN PHE PRO THR ARG ALA GLY GLN CYS GLY GLY VAL SEQRES 13 A 189 VAL THR THR THR GLY LYS VAL ILE GLY ILE HIS VAL GLY SEQRES 14 A 189 GLY ASN GLY ALA GLN GLY PHE ALA ALA MET LEU LEU HIS SEQRES 15 A 189 SER TYR PHE SER ASP THR GLN SEQRES 1 B 189 GLY SER HIS MET ALA SER GLY PRO GLY PHE ASP PHE ALA SEQRES 2 B 189 GLN ALA ILE MET LYS LYS ASN THR VAL ILE ALA ARG THR SEQRES 3 B 189 GLU LYS GLY GLU PHE THR MET LEU GLY VAL TYR ASP ARG SEQRES 4 B 189 VAL ALA VAL ILE PRO THR HIS ALA SER VAL GLY GLU THR SEQRES 5 B 189 ILE TYR ILE ASN ASP VAL GLU THR LYS VAL LEU ASP ALA SEQRES 6 B 189 CYS ALA LEU ARG ASP LEU THR ASP THR ASN LEU GLU ILE SEQRES 7 B 189 THR ILE VAL LYS LEU ASP ARG ASN GLN LYS PHE ARG ASP SEQRES 8 B 189 ILE ARG HIS PHE LEU PRO ARG TYR GLU ASP ASP TYR ASN SEQRES 9 B 189 ASP ALA VAL LEU SER VAL HIS THR SER LYS PHE PRO ASN SEQRES 10 B 189 MET TYR ILE PRO VAL GLY GLN VAL THR ASN TYR GLY PHE SEQRES 11 B 189 LEU ASN LEU GLY GLY THR PRO THR HIS ARG ILE LEU MET SEQRES 12 B 189 TYR ASN PHE PRO THR ARG ALA GLY GLN CYS GLY GLY VAL SEQRES 13 B 189 VAL THR THR THR GLY LYS VAL ILE GLY ILE HIS VAL GLY SEQRES 14 B 189 GLY ASN GLY ALA GLN GLY PHE ALA ALA MET LEU LEU HIS SEQRES 15 B 189 SER TYR PHE SER ASP THR GLN HET AG7 A 201 83 HET AG7 B 201 83 HETNAM AG7 4-{2-(4-FLUORO-BENZYL)-6-METHYL-5-[(5-METHYL-ISOXAZOLE- HETNAM 2 AG7 3-CARBONYL)-AMINO]-4-OXO-HEPTANOYLAMINO}-5-(2-OXO- HETNAM 3 AG7 PYRROLIDIN-3-YL)-PENTANOIC ACID ETHYL ESTER HETSYN AG7 RUPINTRIVIR, BOUND FORM FORMUL 3 AG7 2(C31 H41 F N4 O7) FORMUL 5 HOH *281(H2 O) HELIX 1 AA1 SER A 0 ASN A 14 1 15 HELIX 2 AA2 HIS A 40 SER A 42 5 3 HELIX 3 AA3 ILE A 86 LEU A 90 5 5 HELIX 4 AA4 LEU A 175 PHE A 179 5 5 HELIX 5 AA5 SER B 0 ASN B 14 1 15 HELIX 6 AA6 HIS B 40 SER B 42 5 3 HELIX 7 AA7 ILE B 86 LEU B 90 5 5 HELIX 8 AA8 LEU B 175 PHE B 179 5 5 SHEET 1 AA1 7 THR A 15 THR A 20 0 SHEET 2 AA1 7 GLY A 23 TYR A 31 -1 O PHE A 25 N ALA A 18 SHEET 3 AA1 7 VAL A 34 PRO A 38 -1 O VAL A 34 N TYR A 31 SHEET 4 AA1 7 ASN A 69 LEU A 77 -1 O VAL A 75 N ALA A 35 SHEET 5 AA1 7 VAL A 52 ARG A 63 -1 N LEU A 62 O ILE A 72 SHEET 6 AA1 7 THR A 46 ILE A 49 -1 N ILE A 47 O THR A 54 SHEET 7 AA1 7 THR A 15 THR A 20 -1 N ARG A 19 O TYR A 48 SHEET 1 AA2 7 TYR A 97 HIS A 105 0 SHEET 2 AA2 7 PRO A 110 LEU A 127 -1 O ILE A 114 N LEU A 102 SHEET 3 AA2 7 THR A 130 TYR A 138 -1 O MET A 137 N THR A 120 SHEET 4 AA2 7 GLY A 169 MET A 173 -1 O GLY A 169 N TYR A 138 SHEET 5 AA2 7 LYS A 156 GLY A 164 -1 N GLY A 163 O PHE A 170 SHEET 6 AA2 7 VAL A 150 THR A 153 -1 N VAL A 151 O GLY A 159 SHEET 7 AA2 7 TYR A 97 HIS A 105 -1 N SER A 103 O VAL A 150 SHEET 1 AA3 7 THR B 15 THR B 20 0 SHEET 2 AA3 7 GLY B 23 TYR B 31 -1 O PHE B 25 N ALA B 18 SHEET 3 AA3 7 VAL B 34 PRO B 38 -1 O VAL B 34 N TYR B 31 SHEET 4 AA3 7 ASN B 69 ASP B 78 -1 O VAL B 75 N ALA B 35 SHEET 5 AA3 7 VAL B 52 ARG B 63 -1 N LEU B 62 O ILE B 72 SHEET 6 AA3 7 THR B 46 ILE B 49 -1 N ILE B 47 O THR B 54 SHEET 7 AA3 7 THR B 15 THR B 20 -1 N ARG B 19 O TYR B 48 SHEET 1 AA4 7 TYR B 97 VAL B 104 0 SHEET 2 AA4 7 MET B 112 LEU B 127 -1 O ILE B 114 N LEU B 102 SHEET 3 AA4 7 THR B 130 TYR B 138 -1 O THR B 132 N LEU B 125 SHEET 4 AA4 7 GLY B 169 MET B 173 -1 O GLY B 169 N TYR B 138 SHEET 5 AA4 7 LYS B 156 GLY B 164 -1 N VAL B 162 O PHE B 170 SHEET 6 AA4 7 VAL B 150 THR B 153 -1 N THR B 153 O LYS B 156 SHEET 7 AA4 7 TYR B 97 VAL B 104 -1 N SER B 103 O VAL B 150 LINK SG CYS A 147 C19 AG7 A 201 1555 1555 1.77 LINK SG CYS B 147 C19 AG7 B 201 1555 1555 1.77 CRYST1 80.900 80.900 197.160 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012361 0.007137 0.000000 0.00000 SCALE2 0.000000 0.014273 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005072 0.00000