HEADER TRANSCRIPTION/INHIBITOR 03-JAN-21 7L9A TITLE CRYSTAL STRUCTURE OF BRDT BROMODOMAIN 2 IN COMPLEX WITH CDD-1102 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN TESTIS-SPECIFIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BROMODOMAIN 2; COMPND 5 SYNONYM: CANCER/TESTIS ANTIGEN 9,CT9,RING3-LIKE PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CDD SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRDT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS TRANSCRIPTION/INHIBITOR, TRANSCRIPTION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.SHARMA,G.KAUR,Z.YU,A.F.KU,J.L.ANGLIN,M.N.UCISIK,J.C.FAVER, AUTHOR 2 B.SANKARAN,C.KIM,M.M.MATZUK REVDAT 2 18-OCT-23 7L9A 1 REMARK REVDAT 1 30-JUN-21 7L9A 0 JRNL AUTH Z.YU,A.F.KU,J.L.ANGLIN,R.SHARMA,M.N.UCISIK,J.C.FAVER,F.LI, JRNL AUTH 2 P.NYSHADHAM,N.SIMMONS,K.L.SHARMA,S.NAGARAJAN,K.RIEHLE, JRNL AUTH 3 G.KAUR,B.SANKARAN,M.STORL-DESMOND,S.S.PALMER,D.W.YOUNG, JRNL AUTH 4 C.KIM,M.M.MATZUK JRNL TITL DISCOVERY AND CHARACTERIZATION OF BROMODOMAIN 2-SPECIFIC JRNL TITL 2 INHIBITORS OF BRDT. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33637650 JRNL DOI 10.1073/PNAS.2021102118 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9000 - 4.1200 1.00 2902 151 0.2170 0.2348 REMARK 3 2 4.1200 - 3.2700 1.00 2747 130 0.2068 0.2433 REMARK 3 3 3.2700 - 2.8600 1.00 2713 136 0.2514 0.2915 REMARK 3 4 2.8600 - 2.6000 1.00 2655 152 0.2771 0.3212 REMARK 3 5 2.6000 - 2.4100 1.00 2654 157 0.2807 0.3130 REMARK 3 6 2.4100 - 2.2700 1.00 2607 162 0.3213 0.3226 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.288 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.291 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2011 REMARK 3 ANGLE : 0.827 2735 REMARK 3 CHIRALITY : 0.046 276 REMARK 3 PLANARITY : 0.005 351 REMARK 3 DIHEDRAL : 10.358 265 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8254 -11.3479 -36.1277 REMARK 3 T TENSOR REMARK 3 T11: 0.4145 T22: 0.6534 REMARK 3 T33: 0.3766 T12: -0.1216 REMARK 3 T13: -0.0146 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 4.4011 L22: 8.9065 REMARK 3 L33: 8.7916 L12: 5.3478 REMARK 3 L13: 3.6452 L23: 4.9743 REMARK 3 S TENSOR REMARK 3 S11: -0.5665 S12: 0.6012 S13: 0.1159 REMARK 3 S21: -0.7434 S22: 0.3790 S23: 0.2229 REMARK 3 S31: -0.2814 S32: 0.2959 S33: 0.2075 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2961 -1.0559 -18.5941 REMARK 3 T TENSOR REMARK 3 T11: 0.4993 T22: 0.4581 REMARK 3 T33: 0.3755 T12: -0.2480 REMARK 3 T13: -0.0414 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.7706 L22: 1.9598 REMARK 3 L33: 7.6044 L12: 1.8191 REMARK 3 L13: 0.7223 L23: 0.7562 REMARK 3 S TENSOR REMARK 3 S11: -0.1094 S12: 0.3387 S13: 0.0738 REMARK 3 S21: -0.1204 S22: -0.1306 S23: -0.0734 REMARK 3 S31: -0.8160 S32: 1.2947 S33: 0.2946 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 308 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6418 -12.6661 -21.4806 REMARK 3 T TENSOR REMARK 3 T11: 0.3886 T22: 0.5211 REMARK 3 T33: 0.4798 T12: -0.0408 REMARK 3 T13: -0.0104 T23: -0.0774 REMARK 3 L TENSOR REMARK 3 L11: 4.1224 L22: 2.2073 REMARK 3 L33: 3.3805 L12: -0.2499 REMARK 3 L13: 1.8243 L23: -1.1867 REMARK 3 S TENSOR REMARK 3 S11: -0.3071 S12: 0.4682 S13: -0.2875 REMARK 3 S21: -0.0773 S22: 0.3941 S23: -0.3785 REMARK 3 S31: 0.0643 S32: 0.7825 S33: 0.1985 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 327 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0734 -11.3574 -20.0076 REMARK 3 T TENSOR REMARK 3 T11: 0.2682 T22: 0.2365 REMARK 3 T33: 0.2761 T12: -0.0693 REMARK 3 T13: -0.0287 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 5.3855 L22: 0.7732 REMARK 3 L33: 5.1267 L12: -0.5958 REMARK 3 L13: -0.5262 L23: -1.7591 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: 0.4081 S13: -0.2726 REMARK 3 S21: -0.0764 S22: 0.2213 S23: -0.1040 REMARK 3 S31: -0.1122 S32: -0.0133 S33: -0.0841 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 356 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1852 -2.5356 -20.0636 REMARK 3 T TENSOR REMARK 3 T11: 0.4078 T22: 0.2936 REMARK 3 T33: 0.3368 T12: -0.0713 REMARK 3 T13: -0.0617 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 6.9246 L22: 5.5884 REMARK 3 L33: 3.7246 L12: 1.5636 REMARK 3 L13: 3.7894 L23: 3.5399 REMARK 3 S TENSOR REMARK 3 S11: -0.3133 S12: -0.1067 S13: 0.6337 REMARK 3 S21: 0.2391 S22: -0.1824 S23: 0.1641 REMARK 3 S31: -0.5033 S32: -0.6592 S33: 0.6474 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 375 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8614 -13.3160 -35.9125 REMARK 3 T TENSOR REMARK 3 T11: 0.4169 T22: 0.6742 REMARK 3 T33: 0.5713 T12: -0.3139 REMARK 3 T13: -0.1151 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 4.7001 L22: 6.3207 REMARK 3 L33: 5.9894 L12: 4.9199 REMARK 3 L13: 5.2747 L23: 5.7781 REMARK 3 S TENSOR REMARK 3 S11: -1.1491 S12: 1.9948 S13: -0.2734 REMARK 3 S21: -0.8983 S22: 1.5292 S23: -0.0094 REMARK 3 S31: -0.2953 S32: -0.5126 S33: -0.2084 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 265 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8328 -32.1185 -13.2860 REMARK 3 T TENSOR REMARK 3 T11: 0.7950 T22: 0.7480 REMARK 3 T33: 0.6454 T12: -0.2355 REMARK 3 T13: -0.0643 T23: 0.1335 REMARK 3 L TENSOR REMARK 3 L11: 2.4516 L22: 5.6893 REMARK 3 L33: 7.8650 L12: 1.1994 REMARK 3 L13: 3.6773 L23: 3.3483 REMARK 3 S TENSOR REMARK 3 S11: 0.2485 S12: 0.1693 S13: -0.8783 REMARK 3 S21: 0.0535 S22: 0.2987 S23: 0.6794 REMARK 3 S31: 0.9903 S32: -1.1312 S33: -0.4402 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 283 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3169 -29.6041 -2.5098 REMARK 3 T TENSOR REMARK 3 T11: 0.6184 T22: 0.3174 REMARK 3 T33: 0.3901 T12: -0.1438 REMARK 3 T13: 0.0537 T23: 0.0761 REMARK 3 L TENSOR REMARK 3 L11: 0.8461 L22: 3.7810 REMARK 3 L33: 1.2202 L12: 1.7197 REMARK 3 L13: 0.9779 L23: 1.8806 REMARK 3 S TENSOR REMARK 3 S11: -0.1319 S12: -0.1533 S13: -0.3741 REMARK 3 S21: -0.2985 S22: 0.1628 S23: 0.1632 REMARK 3 S31: 0.6316 S32: -0.0761 S33: -0.0408 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 295 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3084 -12.0866 -5.0013 REMARK 3 T TENSOR REMARK 3 T11: 0.3837 T22: 0.3180 REMARK 3 T33: 0.4463 T12: -0.0041 REMARK 3 T13: -0.0444 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 7.5224 L22: 5.5499 REMARK 3 L33: 5.6481 L12: 1.9823 REMARK 3 L13: -0.5469 L23: -1.6802 REMARK 3 S TENSOR REMARK 3 S11: 0.3248 S12: -0.1360 S13: 0.6917 REMARK 3 S21: 0.2928 S22: -0.3675 S23: -0.1174 REMARK 3 S31: -0.2274 S32: -0.0074 S33: 0.1273 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 318 THROUGH 326 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4362 -22.1947 -6.4068 REMARK 3 T TENSOR REMARK 3 T11: 0.5579 T22: 0.6467 REMARK 3 T33: 0.4370 T12: -0.0694 REMARK 3 T13: -0.0858 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 6.6649 L22: 8.8266 REMARK 3 L33: 4.2711 L12: -1.0895 REMARK 3 L13: 0.5128 L23: -5.1792 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.5353 S13: -0.2888 REMARK 3 S21: 0.3477 S22: -0.0287 S23: 0.1549 REMARK 3 S31: -0.1606 S32: -1.5838 S33: -0.1408 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 327 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2829 -20.2819 -13.7551 REMARK 3 T TENSOR REMARK 3 T11: 0.4903 T22: 0.4174 REMARK 3 T33: 0.3399 T12: -0.0315 REMARK 3 T13: -0.0950 T23: 0.0952 REMARK 3 L TENSOR REMARK 3 L11: 3.7178 L22: 1.5134 REMARK 3 L33: 2.4801 L12: 1.9408 REMARK 3 L13: -0.0506 L23: -0.2505 REMARK 3 S TENSOR REMARK 3 S11: -0.0711 S12: 0.0802 S13: -0.0480 REMARK 3 S21: -0.3112 S22: 0.1885 S23: 0.1623 REMARK 3 S31: 0.3411 S32: -0.5149 S33: -0.1058 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 356 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5847 -29.8171 -14.9388 REMARK 3 T TENSOR REMARK 3 T11: 0.7499 T22: 0.3728 REMARK 3 T33: 0.3403 T12: -0.0992 REMARK 3 T13: -0.0565 T23: 0.0426 REMARK 3 L TENSOR REMARK 3 L11: 2.3947 L22: 2.6114 REMARK 3 L33: 3.9501 L12: -2.3175 REMARK 3 L13: -1.0262 L23: -0.3565 REMARK 3 S TENSOR REMARK 3 S11: -0.1829 S12: 1.0760 S13: -0.2987 REMARK 3 S21: -0.7329 S22: 0.3444 S23: 0.0519 REMARK 3 S31: 1.0258 S32: 0.1622 S33: -0.2488 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 266 THROUGH 269 OR REMARK 3 RESID 271 THROUGH 272 OR RESID 274 REMARK 3 THROUGH 284 OR RESID 287 THROUGH 299 OR REMARK 3 RESID 302 THROUGH 312 OR RESID 314 REMARK 3 THROUGH 321 OR RESID 323 THROUGH 326 OR REMARK 3 RESID 328 THROUGH 334 OR RESID 336 REMARK 3 THROUGH 348 OR RESID 350 THROUGH 378)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 266 THROUGH 269 OR REMARK 3 RESID 271 THROUGH 272 OR RESID 274 REMARK 3 THROUGH 284 OR RESID 287 THROUGH 299 OR REMARK 3 RESID 302 THROUGH 312 OR RESID 314 REMARK 3 THROUGH 321 OR RESID 323 THROUGH 326 OR REMARK 3 RESID 328 THROUGH 334 OR RESID 336 REMARK 3 THROUGH 348 OR RESID 350 THROUGH 378)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7L9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000253894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17166 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 48.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4UYG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SUCCINIC ACID, PH 7.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.93400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.96700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.96700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 127.93400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 245 REMARK 465 GLY A 246 REMARK 465 SER A 247 REMARK 465 SER A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 SER A 255 REMARK 465 SER A 256 REMARK 465 GLY A 257 REMARK 465 LEU A 258 REMARK 465 VAL A 259 REMARK 465 PRO A 260 REMARK 465 ARG A 261 REMARK 465 MET B 245 REMARK 465 GLY B 246 REMARK 465 SER B 247 REMARK 465 SER B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 SER B 255 REMARK 465 SER B 256 REMARK 465 GLY B 257 REMARK 465 LEU B 258 REMARK 465 VAL B 259 REMARK 465 PRO B 260 REMARK 465 ARG B 261 REMARK 465 GLY B 262 REMARK 465 SER B 263 REMARK 465 HIS B 264 REMARK 465 PRO B 379 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 286 CG CD CE NZ REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 PRO A 379 CG CD REMARK 470 MET B 265 CG SD CE REMARK 470 GLU B 270 CG CD OE1 OE2 REMARK 470 ARG B 273 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 300 CG1 CG2 REMARK 470 ASN B 301 CG OD1 ND2 REMARK 470 LYS B 313 CG CD CE NZ REMARK 470 ASN B 327 CG OD1 ND2 REMARK 470 LYS B 331 CG CD CE NZ REMARK 470 LYS B 335 CG CD CE NZ REMARK 470 LYS B 349 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 270 NH1 ARG A 273 2.13 REMARK 500 OE1 GLU B 356 O HOH B 501 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 379 N - CA - CB ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 267 130.01 65.94 REMARK 500 ILE B 377 -124.35 -123.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XWP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XWP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME B 402 DBREF 7L9A A 268 379 UNP Q58F21 BRDT_HUMAN 269 380 DBREF 7L9A B 268 379 UNP Q58F21 BRDT_HUMAN 269 380 SEQADV 7L9A MET A 245 UNP Q58F21 INITIATING METHIONINE SEQADV 7L9A GLY A 246 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A SER A 247 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A SER A 248 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS A 249 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS A 250 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS A 251 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS A 252 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS A 253 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS A 254 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A SER A 255 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A SER A 256 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A GLY A 257 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A LEU A 258 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A VAL A 259 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A PRO A 260 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A ARG A 261 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A GLY A 262 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A SER A 263 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS A 264 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A MET A 265 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A ALA A 266 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A SER A 267 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A MET B 245 UNP Q58F21 INITIATING METHIONINE SEQADV 7L9A GLY B 246 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A SER B 247 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A SER B 248 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS B 249 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS B 250 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS B 251 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS B 252 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS B 253 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS B 254 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A SER B 255 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A SER B 256 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A GLY B 257 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A LEU B 258 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A VAL B 259 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A PRO B 260 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A ARG B 261 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A GLY B 262 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A SER B 263 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A HIS B 264 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A MET B 265 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A ALA B 266 UNP Q58F21 EXPRESSION TAG SEQADV 7L9A SER B 267 UNP Q58F21 EXPRESSION TAG SEQRES 1 A 135 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 135 LEU VAL PRO ARG GLY SER HIS MET ALA SER VAL THR GLU SEQRES 3 A 135 GLN LEU ARG HIS CYS SER GLU ILE LEU LYS GLU MET LEU SEQRES 4 A 135 ALA LYS LYS HIS PHE SER TYR ALA TRP PRO PHE TYR ASN SEQRES 5 A 135 PRO VAL ASP VAL ASN ALA LEU GLY LEU HIS ASN TYR TYR SEQRES 6 A 135 ASP VAL VAL LYS ASN PRO MET ASP LEU GLY THR ILE LYS SEQRES 7 A 135 GLU LYS MET ASP ASN GLN GLU TYR LYS ASP ALA TYR LYS SEQRES 8 A 135 PHE ALA ALA ASP VAL ARG LEU MET PHE MET ASN CYS TYR SEQRES 9 A 135 LYS TYR ASN PRO PRO ASP HIS GLU VAL VAL THR MET ALA SEQRES 10 A 135 ARG MET LEU GLN ASP VAL PHE GLU THR HIS PHE SER LYS SEQRES 11 A 135 ILE PRO ILE GLU PRO SEQRES 1 B 135 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 135 LEU VAL PRO ARG GLY SER HIS MET ALA SER VAL THR GLU SEQRES 3 B 135 GLN LEU ARG HIS CYS SER GLU ILE LEU LYS GLU MET LEU SEQRES 4 B 135 ALA LYS LYS HIS PHE SER TYR ALA TRP PRO PHE TYR ASN SEQRES 5 B 135 PRO VAL ASP VAL ASN ALA LEU GLY LEU HIS ASN TYR TYR SEQRES 6 B 135 ASP VAL VAL LYS ASN PRO MET ASP LEU GLY THR ILE LYS SEQRES 7 B 135 GLU LYS MET ASP ASN GLN GLU TYR LYS ASP ALA TYR LYS SEQRES 8 B 135 PHE ALA ALA ASP VAL ARG LEU MET PHE MET ASN CYS TYR SEQRES 9 B 135 LYS TYR ASN PRO PRO ASP HIS GLU VAL VAL THR MET ALA SEQRES 10 B 135 ARG MET LEU GLN ASP VAL PHE GLU THR HIS PHE SER LYS SEQRES 11 B 135 ILE PRO ILE GLU PRO HET XWP A 401 41 HET BME A 402 4 HET XWP B 401 41 HET BME B 402 4 HETNAM XWP N~1~-(5-{[3-(4-AMINO-2-METHYLPHENYL)-1-METHYL-1H- HETNAM 2 XWP INDAZOLE-5-CARBONYL]AMINO}-2-METHYLPHENYL)-N~4~- HETNAM 3 XWP METHYLBENZENE-1,4-DICARBOXAMIDE HETNAM BME BETA-MERCAPTOETHANOL FORMUL 3 XWP 2(C32 H30 N6 O3) FORMUL 4 BME 2(C2 H6 O S) FORMUL 7 HOH *39(H2 O) HELIX 1 AA1 GLY A 262 LEU A 283 1 22 HELIX 2 AA2 ALA A 284 LYS A 286 5 3 HELIX 3 AA3 HIS A 287 TRP A 292 1 6 HELIX 4 AA4 PRO A 293 TYR A 295 5 3 HELIX 5 AA5 ASP A 299 GLY A 304 1 6 HELIX 6 AA6 ASN A 307 VAL A 312 1 6 HELIX 7 AA7 ASP A 317 ASN A 327 1 11 HELIX 8 AA8 ASP A 332 ASN A 351 1 20 HELIX 9 AA9 HIS A 355 SER A 373 1 19 HELIX 10 AB1 SER B 267 LEU B 283 1 17 HELIX 11 AB2 ALA B 284 LYS B 286 5 3 HELIX 12 AB3 HIS B 287 TRP B 292 1 6 HELIX 13 AB4 PRO B 293 TYR B 295 5 3 HELIX 14 AB5 ASP B 299 GLY B 304 1 6 HELIX 15 AB6 ASN B 307 VAL B 312 1 6 HELIX 16 AB7 ASP B 317 ASN B 327 1 11 HELIX 17 AB8 ASP B 332 ASN B 351 1 20 HELIX 18 AB9 HIS B 355 SER B 373 1 19 SITE 1 AC1 16 VAL A 298 LEU A 303 LEU A 305 HIS A 306 SITE 2 AC1 16 TYR A 308 VAL A 311 ASN A 346 CYS A 347 SITE 3 AC1 16 TYR A 350 ASN A 351 PRO A 352 HIS A 355 SITE 4 AC1 16 HOH A 512 TRP B 292 TYR B 295 ASN B 296 SITE 1 AC2 5 VAL A 312 LYS A 313 ASN A 314 ASN A 346 SITE 2 AC2 5 LYS A 349 SITE 1 AC3 21 TYR A 348 LYS A 349 ARG A 362 GLN A 365 SITE 2 AC3 21 LYS B 285 TRP B 292 PRO B 293 VAL B 298 SITE 3 AC3 21 LEU B 303 LEU B 305 HIS B 306 TYR B 308 SITE 4 AC3 21 VAL B 311 ASN B 346 CYS B 347 TYR B 350 SITE 5 AC3 21 ASN B 351 PRO B 352 HIS B 355 HOH B 504 SITE 6 AC3 21 HOH B 516 SITE 1 AC4 6 TRP B 292 PRO B 293 TYR B 295 ASN B 296 SITE 2 AC4 6 PRO B 297 ASP B 299 CRYST1 56.470 56.470 191.901 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017709 0.010224 0.000000 0.00000 SCALE2 0.000000 0.020448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005211 0.00000