HEADER CELL CYCLE 08-JAN-21 7LBK TITLE CRYSTAL STRUCTURE OF HUMAN SURVIVIN BOUND TO HISTONE H3 T3PHK4ME3 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: APOPTOSIS INHIBITOR 4,APOPTOSIS INHIBITOR SURVIVIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H3 T3PHK4ME3 PEPTIDE; COMPND 8 CHAIN: D, C; COMPND 9 SYNONYM: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE COMPND 10 H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE COMPND 11 H3/L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BIRC5, API4, IAP4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS LYSINE METHYLATION, THREONINE PHOSPHORYLATION, HISTONE H3, CPC, CELL KEYWDS 2 CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR E.NIEDZIALKOWSKA,W.MINOR,P.T.STUKENBERG REVDAT 3 03-AUG-22 7LBK 1 JRNL REVDAT 2 27-JUL-22 7LBK 1 JRNL REVDAT 1 12-JAN-22 7LBK 0 JRNL AUTH E.NIEDZIALKOWSKA,L.LIU,C.KUSCU,Z.MAYO,W.MINOR,B.D.STRAHL, JRNL AUTH 2 M.ADLI,P.T.STUKENBERG JRNL TITL TIP60 ACETYLATION OF HISTONE H3K4 TEMPORALLY CONTROLS JRNL TITL 2 CHROMOSOME PASSENGER COMPLEX LOCALIZATION. JRNL REF MOL.BIOL.CELL V. 33 BR15 2022 JRNL REFN ESSN 1939-4586 JRNL PMID 35653296 JRNL DOI 10.1091/MBC.E21-06-0283 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 3 NUMBER OF REFLECTIONS : 11791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 623 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 483 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 49.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 19 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2250 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.44000 REMARK 3 B22 (A**2) : 2.03000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.566 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.321 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.775 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2306 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2118 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3118 ; 1.699 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4900 ; 1.051 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 5.576 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;36.452 ;24.775 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 383 ;17.743 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.838 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 326 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2580 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 519 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 B 6 139 A 6 139 6763 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): -40.636 40.516 93.397 REMARK 3 T TENSOR REMARK 3 T11: 0.1756 T22: 0.1243 REMARK 3 T33: 0.1798 T12: -0.0078 REMARK 3 T13: -0.0166 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 7.5476 L22: 10.8284 REMARK 3 L33: 3.5726 L12: -1.2830 REMARK 3 L13: 0.9280 L23: 1.4391 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: -0.1649 S13: 0.6669 REMARK 3 S21: -0.1549 S22: 0.0033 S23: 0.4706 REMARK 3 S31: -0.2078 S32: -0.1073 S33: -0.0745 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): -73.156 31.349 99.617 REMARK 3 T TENSOR REMARK 3 T11: 0.3565 T22: 0.1204 REMARK 3 T33: 0.1746 T12: -0.0297 REMARK 3 T13: -0.0020 T23: -0.0464 REMARK 3 L TENSOR REMARK 3 L11: 31.3267 L22: 3.0773 REMARK 3 L33: 3.7299 L12: -3.6603 REMARK 3 L13: -4.1047 L23: -0.1098 REMARK 3 S TENSOR REMARK 3 S11: 0.2322 S12: -0.3814 S13: 0.2612 REMARK 3 S21: -0.1371 S22: -0.0321 S23: -0.0672 REMARK 3 S31: -0.3880 S32: -0.2129 S33: -0.2002 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): -25.641 11.228 72.437 REMARK 3 T TENSOR REMARK 3 T11: 0.2653 T22: 0.0872 REMARK 3 T33: 0.0207 T12: 0.0273 REMARK 3 T13: 0.0151 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 5.7710 L22: 11.9354 REMARK 3 L33: 4.9657 L12: 0.6943 REMARK 3 L13: 0.3282 L23: 1.4409 REMARK 3 S TENSOR REMARK 3 S11: -0.1059 S12: 0.0757 S13: 0.0128 REMARK 3 S21: -0.1894 S22: 0.0842 S23: 0.0968 REMARK 3 S31: 0.0224 S32: 0.0925 S33: 0.0218 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 92 B 140 REMARK 3 ORIGIN FOR THE GROUP (A): -23.038 24.811 60.760 REMARK 3 T TENSOR REMARK 3 T11: 0.4449 T22: 0.0298 REMARK 3 T33: 0.2558 T12: -0.0065 REMARK 3 T13: 0.0151 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.1733 L22: 0.0386 REMARK 3 L33: 26.6829 L12: -0.1955 REMARK 3 L13: -3.2718 L23: 0.8515 REMARK 3 S TENSOR REMARK 3 S11: -0.1513 S12: -0.0005 S13: 0.1650 REMARK 3 S21: 0.0097 S22: 0.0006 S23: -0.0217 REMARK 3 S31: 0.4292 S32: 0.0109 S33: 0.1508 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7LBK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000254030. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.27822 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13890 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 14.80 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 0.75600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, DM, MLPHARE, HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CRYSTAL WAS OBTAINED BY MIXING 1 REMARK 280 UL OF PROTEIN AT 10 MG/ML WITH 1 UL OF MOTHER LIQUOR COMPOSED OF REMARK 280 0.16 M POTASSIUM/SODIUM TARTRATE, 14% PEG 3350., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.14600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.68450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.14600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.68450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 GLU B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 PRO B 4 REMARK 465 MET B 141 REMARK 465 ASP B 142 REMARK 465 THR D 6 REMARK 465 ALA D 7 REMARK 465 ARG D 8 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 465 THR D 11 REMARK 465 GLY D 12 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 GLU A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 THR A 5 REMARK 465 THR C 6 REMARK 465 ALA C 7 REMARK 465 ARG C 8 REMARK 465 LYS C 9 REMARK 465 SER C 10 REMARK 465 THR C 11 REMARK 465 GLY C 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 23 CD CE NZ REMARK 470 GLU B 75 CD OE1 OE2 REMARK 470 LYS B 78 CE NZ REMARK 470 LYS B 90 CG CD CE NZ REMARK 470 LYS B 110 CE NZ REMARK 470 LYS B 129 CD CE NZ REMARK 470 ARG B 133 CD NE CZ NH1 NH2 REMARK 470 GLN D 5 CG CD OE1 NE2 REMARK 470 LYS A 23 CE NZ REMARK 470 ARG A 37 CZ NH1 NH2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 GLU A 68 CG CD OE1 OE2 REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 LYS A 78 CE NZ REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 LYS A 90 CD CE NZ REMARK 470 LYS A 110 CE NZ REMARK 470 LYS A 121 CE NZ REMARK 470 LYS A 122 NZ REMARK 470 LYS A 129 CE NZ REMARK 470 MET A 141 CG SD CE REMARK 470 ASP A 142 CG OD1 OD2 REMARK 470 ARG C 2 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 28 -144.33 -133.07 REMARK 500 LEU A 28 -154.02 -128.11 REMARK 500 ALA A 140 -5.92 -57.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 315 DISTANCE = 5.85 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 57 SG REMARK 620 2 CYS B 60 SG 105.4 REMARK 620 3 HIS B 77 NE2 109.0 105.0 REMARK 620 4 CYS B 84 SG 121.6 109.9 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 57 SG REMARK 620 2 CYS A 60 SG 108.9 REMARK 620 3 HIS A 77 NE2 103.6 108.7 REMARK 620 4 CYS A 84 SG 116.6 113.0 105.2 REMARK 620 N 1 2 3 DBREF 7LBK B 1 142 UNP O15392 BIRC5_HUMAN 1 142 DBREF 7LBK D 1 12 UNP P68431 H31_HUMAN 2 13 DBREF 7LBK A 1 142 UNP O15392 BIRC5_HUMAN 1 142 DBREF 7LBK C 1 12 UNP P68431 H31_HUMAN 2 13 SEQADV 7LBK GLY B -3 UNP O15392 EXPRESSION TAG SEQADV 7LBK SER B -2 UNP O15392 EXPRESSION TAG SEQADV 7LBK HIS B -1 UNP O15392 EXPRESSION TAG SEQADV 7LBK GLU B 0 UNP O15392 EXPRESSION TAG SEQADV 7LBK GLY A -3 UNP O15392 EXPRESSION TAG SEQADV 7LBK SER A -2 UNP O15392 EXPRESSION TAG SEQADV 7LBK HIS A -1 UNP O15392 EXPRESSION TAG SEQADV 7LBK GLU A 0 UNP O15392 EXPRESSION TAG SEQRES 1 B 146 GLY SER HIS GLU MET GLY ALA PRO THR LEU PRO PRO ALA SEQRES 2 B 146 TRP GLN PRO PHE LEU LYS ASP HIS ARG ILE SER THR PHE SEQRES 3 B 146 LYS ASN TRP PRO PHE LEU GLU GLY CYS ALA CYS THR PRO SEQRES 4 B 146 GLU ARG MET ALA GLU ALA GLY PHE ILE HIS CYS PRO THR SEQRES 5 B 146 GLU ASN GLU PRO ASP LEU ALA GLN CYS PHE PHE CYS PHE SEQRES 6 B 146 LYS GLU LEU GLU GLY TRP GLU PRO ASP ASP ASP PRO ILE SEQRES 7 B 146 GLU GLU HIS LYS LYS HIS SER SER GLY CYS ALA PHE LEU SEQRES 8 B 146 SER VAL LYS LYS GLN PHE GLU GLU LEU THR LEU GLY GLU SEQRES 9 B 146 PHE LEU LYS LEU ASP ARG GLU ARG ALA LYS ASN LYS ILE SEQRES 10 B 146 ALA LYS GLU THR ASN ASN LYS LYS LYS GLU PHE GLU GLU SEQRES 11 B 146 THR ALA LYS LYS VAL ARG ARG ALA ILE GLU GLN LEU ALA SEQRES 12 B 146 ALA MET ASP SEQRES 1 D 12 ALA ARG TPO M3L GLN THR ALA ARG LYS SER THR GLY SEQRES 1 A 146 GLY SER HIS GLU MET GLY ALA PRO THR LEU PRO PRO ALA SEQRES 2 A 146 TRP GLN PRO PHE LEU LYS ASP HIS ARG ILE SER THR PHE SEQRES 3 A 146 LYS ASN TRP PRO PHE LEU GLU GLY CYS ALA CYS THR PRO SEQRES 4 A 146 GLU ARG MET ALA GLU ALA GLY PHE ILE HIS CYS PRO THR SEQRES 5 A 146 GLU ASN GLU PRO ASP LEU ALA GLN CYS PHE PHE CYS PHE SEQRES 6 A 146 LYS GLU LEU GLU GLY TRP GLU PRO ASP ASP ASP PRO ILE SEQRES 7 A 146 GLU GLU HIS LYS LYS HIS SER SER GLY CYS ALA PHE LEU SEQRES 8 A 146 SER VAL LYS LYS GLN PHE GLU GLU LEU THR LEU GLY GLU SEQRES 9 A 146 PHE LEU LYS LEU ASP ARG GLU ARG ALA LYS ASN LYS ILE SEQRES 10 A 146 ALA LYS GLU THR ASN ASN LYS LYS LYS GLU PHE GLU GLU SEQRES 11 A 146 THR ALA LYS LYS VAL ARG ARG ALA ILE GLU GLN LEU ALA SEQRES 12 A 146 ALA MET ASP SEQRES 1 C 12 ALA ARG TPO M3L GLN THR ALA ARG LYS SER THR GLY MODRES 7LBK TPO D 3 THR MODIFIED RESIDUE MODRES 7LBK M3L D 4 LYS MODIFIED RESIDUE MODRES 7LBK TPO C 3 THR MODIFIED RESIDUE MODRES 7LBK M3L C 4 LYS MODIFIED RESIDUE HET TPO D 3 11 HET M3L D 4 12 HET TPO C 3 11 HET M3L C 4 12 HET ZN B 201 1 HET ZN A 201 1 HETNAM TPO PHOSPHOTHREONINE HETNAM M3L N-TRIMETHYLLYSINE HETNAM ZN ZINC ION HETSYN TPO PHOSPHONOTHREONINE FORMUL 2 TPO 2(C4 H10 N O6 P) FORMUL 2 M3L 2(C9 H21 N2 O2 1+) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 HOH *34(H2 O) HELIX 1 AA1 PRO B 7 PHE B 13 5 7 HELIX 2 AA2 LEU B 14 THR B 21 1 8 HELIX 3 AA3 THR B 34 ALA B 41 1 8 HELIX 4 AA4 ASP B 72 SER B 81 1 10 HELIX 5 AA5 CYS B 84 SER B 88 5 5 HELIX 6 AA6 GLN B 92 LEU B 96 5 5 HELIX 7 AA7 THR B 97 ALA B 140 1 44 HELIX 8 AA8 PRO A 7 PHE A 13 5 7 HELIX 9 AA9 LEU A 14 THR A 21 1 8 HELIX 10 AB1 THR A 34 ALA A 41 1 8 HELIX 11 AB2 ASP A 72 SER A 81 1 10 HELIX 12 AB3 CYS A 84 SER A 88 5 5 HELIX 13 AB4 GLN A 92 LEU A 96 5 5 HELIX 14 AB5 THR A 97 ALA A 140 1 44 SHEET 1 AA1 4 PHE B 43 HIS B 45 0 SHEET 2 AA1 4 ALA B 55 CYS B 57 -1 O GLN B 56 N ILE B 44 SHEET 3 AA1 4 GLU B 63 GLU B 65 -1 O LEU B 64 N ALA B 55 SHEET 4 AA1 4 ARG D 2 TPO D 3 -1 O ARG D 2 N GLU B 65 SHEET 1 AA2 4 PHE A 43 HIS A 45 0 SHEET 2 AA2 4 ALA A 55 CYS A 57 -1 O GLN A 56 N ILE A 44 SHEET 3 AA2 4 GLU A 63 GLU A 65 -1 O LEU A 64 N ALA A 55 SHEET 4 AA2 4 ARG C 2 TPO C 3 -1 O ARG C 2 N GLU A 65 LINK C ARG D 2 N TPO D 3 1555 1555 1.34 LINK C TPO D 3 N M3L D 4 1555 1555 1.33 LINK C M3L D 4 N GLN D 5 1555 1555 1.35 LINK C ARG C 2 N TPO C 3 1555 1555 1.34 LINK C TPO C 3 N M3L C 4 1555 1555 1.33 LINK C M3L C 4 N GLN C 5 1555 1555 1.34 LINK SG CYS B 57 ZN ZN B 201 1555 1555 2.16 LINK SG CYS B 60 ZN ZN B 201 1555 1555 2.35 LINK NE2 HIS B 77 ZN ZN B 201 1555 1555 2.20 LINK SG CYS B 84 ZN ZN B 201 1555 1555 2.25 LINK SG CYS A 57 ZN ZN A 201 1555 1555 2.27 LINK SG CYS A 60 ZN ZN A 201 1555 1555 2.27 LINK NE2 HIS A 77 ZN ZN A 201 1555 1555 2.21 LINK SG CYS A 84 ZN ZN A 201 1555 1555 2.30 CRYST1 114.292 71.369 82.554 90.00 129.33 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008750 0.000000 0.007168 0.00000 SCALE2 0.000000 0.014012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015660 0.00000