HEADER IMMUNE SYSTEM 17-JAN-21 7LFI TITLE MODEL OF MHC CLASS IB H2-M3 WITH MOUSE ND1 N-TERMINAL HEPTAPEPTIDE TITLE 2 REFINED AT 1.70 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTOCOMPATIBILITY 2, M REGION LOCUS 3; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: MHC CLASS I ANTIGEN H-2M3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: B, E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HEPTAPEPTIDE FROM NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1; COMPND 13 CHAIN: C, F; COMPND 14 FRAGMENT: FIRST SEVEN AMINO-TERMINAL RESIDUES; COMPND 15 SYNONYM: NADH DEHYDROGENASE SUBUNIT 1; COMPND 16 EC: 7.1.1.2; COMPND 17 ENGINEERED: YES; COMPND 18 OTHER_DETAILS: THE N-TERMINAL METHIONINE IS N-FORMYLMETHIONINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-M3, H-2M3; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRMHA-3; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: B2M; SOURCE 15 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PRMHA-3; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 22 ORGANISM_COMMON: MOUSE; SOURCE 23 ORGANISM_TAXID: 10090 KEYWDS HISTOCOMPATIBILITY ANTIGEN/PEPTIDE, HISTOCOMPATIBILITY ANTIGEN- KEYWDS 2 PEPTIDE COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.R.TOMCHICK,J.DEISENHOFER,S.SHEN REVDAT 3 25-OCT-23 7LFI 1 REMARK REVDAT 2 28-DEC-22 7LFI 1 JRNL REVDAT 1 14-JUL-21 7LFI 0 JRNL AUTH A.STRAND,S.T.SHEN,D.R.TOMCHICK,J.WANG,C.R.WANG,J.DEISENHOFER JRNL TITL STRUCTURE AND DYNAMICS OF MAJOR HISTOCOMPATIBILITY CLASS IB JRNL TITL 2 MOLECULE H2-M3 COMPLEXED WITH MITOCHONDRIAL-DERIVED JRNL TITL 3 PEPTIDES. JRNL REF J.BIOMOL.STRUCT.DYN. V. 40 10300 2022 JRNL REFN ESSN 1538-0254 JRNL PMID 34176438 JRNL DOI 10.1080/07391102.2021.1942214 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.R.WANG,A.R.CASTANO,P.A.PETERSON,C.SLAUGHTER,K.F.LINDAHL, REMARK 1 AUTH 2 J.DEISENHOFER REMARK 1 TITL NONCLASSICAL BINDING OF FORMYLATED PEPTIDE IN CRYSTAL REMARK 1 TITL 2 STRUCTURE OF THE MHC CLASS IB MOLECULE H2-M3. REMARK 1 REF CELL V. 82 655 1995 REMARK 1 PMID 7664344 REMARK 1 DOI 10.1016/0092-8674(95)90037-3 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.R.WANG,B.E.LOVELAND,K.F.LINDAHL REMARK 1 TITL H2-M3 ENCODES THE MHC CLASS I MOLECULE PRESENTING THE REMARK 1 TITL 2 MATERNALLY TRANSMITTED ANTIGEN OF THE MOUSE. REMARK 1 REF CELL V. 66 335 1991 REMARK 1 PMID 1855254 REMARK 1 DOI 10.1016/0092-8674(91)90623-7 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2-3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 85212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 4321 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5300 - 5.2800 1.00 2832 152 0.1968 0.2193 REMARK 3 2 5.2700 - 4.1900 0.99 2839 155 0.1504 0.1949 REMARK 3 3 4.1900 - 3.6600 0.99 2815 140 0.1589 0.1778 REMARK 3 4 3.6600 - 3.3300 0.99 2843 159 0.1878 0.2041 REMARK 3 5 3.3300 - 3.0900 0.99 2829 139 0.1947 0.2407 REMARK 3 6 3.0900 - 2.9100 0.99 2768 157 0.2181 0.2459 REMARK 3 7 2.9100 - 2.7600 0.98 2803 160 0.2039 0.2320 REMARK 3 8 2.7600 - 2.6400 0.98 2825 135 0.1996 0.2464 REMARK 3 9 2.6400 - 2.5400 0.98 2772 173 0.2023 0.2500 REMARK 3 10 2.5400 - 2.4500 0.98 2773 168 0.2183 0.2730 REMARK 3 11 2.4500 - 2.3700 0.98 2803 146 0.2199 0.2852 REMARK 3 12 2.3700 - 2.3100 0.98 2744 155 0.2295 0.3086 REMARK 3 13 2.3100 - 2.2500 0.97 2844 123 0.2320 0.3014 REMARK 3 14 2.2500 - 2.1900 0.98 2740 149 0.2295 0.2778 REMARK 3 15 2.1900 - 2.1400 0.97 2778 151 0.2364 0.3010 REMARK 3 16 2.1400 - 2.1000 0.97 2786 148 0.2524 0.3107 REMARK 3 17 2.1000 - 2.0500 0.97 2738 139 0.2707 0.3211 REMARK 3 18 2.0500 - 2.0200 0.97 2744 161 0.2927 0.3569 REMARK 3 19 2.0200 - 1.9800 0.96 2781 134 0.3156 0.3546 REMARK 3 20 1.9800 - 1.9500 0.96 2734 152 0.3314 0.3713 REMARK 3 21 1.9500 - 1.9100 0.96 2681 155 0.3471 0.3811 REMARK 3 22 1.9100 - 1.8900 0.95 2763 144 0.3664 0.3995 REMARK 3 23 1.8900 - 1.8600 0.95 2664 124 0.3675 0.3633 REMARK 3 24 1.8600 - 1.8300 0.96 2753 134 0.3730 0.3898 REMARK 3 25 1.8300 - 1.8100 0.94 2676 159 0.3832 0.3777 REMARK 3 26 1.8100 - 1.7800 0.95 2666 147 0.3858 0.4185 REMARK 3 27 1.7800 - 1.7600 0.92 2626 130 0.3921 0.4222 REMARK 3 28 1.7600 - 1.7400 0.85 2453 140 0.3958 0.3894 REMARK 3 29 1.7400 - 1.7200 0.75 2093 110 0.4047 0.4396 REMARK 3 30 1.7200 - 1.7000 0.59 1725 82 0.3985 0.3956 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.346 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.628 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 6442 REMARK 3 ANGLE : 0.982 8739 REMARK 3 CHIRALITY : 0.065 911 REMARK 3 PLANARITY : 0.008 1135 REMARK 3 DIHEDRAL : 18.134 2412 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 30 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4448 20.6676 20.0526 REMARK 3 T TENSOR REMARK 3 T11: 0.2027 T22: 0.2436 REMARK 3 T33: 0.1242 T12: -0.0367 REMARK 3 T13: -0.0268 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 4.2869 L22: 2.3066 REMARK 3 L33: 2.7470 L12: -0.2197 REMARK 3 L13: 0.3837 L23: -1.3377 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: -0.3179 S13: -0.0450 REMARK 3 S21: 0.4082 S22: -0.1212 S23: -0.1086 REMARK 3 S31: 0.0797 S32: 0.3738 S33: 0.1586 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9234 23.0880 19.8959 REMARK 3 T TENSOR REMARK 3 T11: 0.2559 T22: 0.6281 REMARK 3 T33: 0.2580 T12: -0.0715 REMARK 3 T13: -0.0511 T23: 0.0587 REMARK 3 L TENSOR REMARK 3 L11: 5.2358 L22: 7.3145 REMARK 3 L33: 2.7812 L12: -2.3950 REMARK 3 L13: -1.9862 L23: 1.6336 REMARK 3 S TENSOR REMARK 3 S11: -0.1590 S12: -0.2955 S13: 0.3161 REMARK 3 S21: 0.2094 S22: -0.0269 S23: -0.6324 REMARK 3 S31: -0.2411 S32: 0.8218 S33: 0.1292 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5942 32.6490 16.7003 REMARK 3 T TENSOR REMARK 3 T11: 0.6280 T22: 0.3772 REMARK 3 T33: 0.2465 T12: -0.2033 REMARK 3 T13: -0.0699 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 7.4655 L22: 2.3722 REMARK 3 L33: 1.6820 L12: -2.3939 REMARK 3 L13: -1.7518 L23: 0.3308 REMARK 3 S TENSOR REMARK 3 S11: 0.2700 S12: 0.1228 S13: 0.9887 REMARK 3 S21: 0.0291 S22: -0.1699 S23: -0.3966 REMARK 3 S31: -0.7045 S32: 0.4039 S33: -0.0763 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5778 20.3590 11.3583 REMARK 3 T TENSOR REMARK 3 T11: 0.0993 T22: 0.1599 REMARK 3 T33: 0.1523 T12: 0.0545 REMARK 3 T13: 0.0155 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 2.8802 L22: 1.3499 REMARK 3 L33: 1.2798 L12: 0.0947 REMARK 3 L13: -0.3194 L23: -1.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.3357 S13: -0.0861 REMARK 3 S21: -0.1087 S22: 0.0311 S23: 0.1397 REMARK 3 S31: 0.1242 S32: 0.2251 S33: 0.0333 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5407 27.3392 3.5155 REMARK 3 T TENSOR REMARK 3 T11: 0.3393 T22: 0.2911 REMARK 3 T33: 0.2023 T12: -0.0637 REMARK 3 T13: -0.0909 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 7.0650 L22: 1.1912 REMARK 3 L33: 1.8595 L12: 0.0548 REMARK 3 L13: -2.1117 L23: -0.5666 REMARK 3 S TENSOR REMARK 3 S11: -0.0431 S12: 0.5963 S13: 0.4044 REMARK 3 S21: -0.1925 S22: -0.0194 S23: 0.0988 REMARK 3 S31: -0.2137 S32: 0.1824 S33: 0.0869 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6923 -1.9140 19.6641 REMARK 3 T TENSOR REMARK 3 T11: 0.5003 T22: 0.4356 REMARK 3 T33: 0.3752 T12: 0.1955 REMARK 3 T13: 0.1557 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 0.5867 L22: 4.0016 REMARK 3 L33: 1.9551 L12: 0.6863 REMARK 3 L13: 0.0268 L23: -2.4791 REMARK 3 S TENSOR REMARK 3 S11: -0.1247 S12: -0.0847 S13: -0.3517 REMARK 3 S21: -0.4300 S22: -0.1973 S23: -0.3183 REMARK 3 S31: 0.5323 S32: 0.5143 S33: 0.3034 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.7097 -7.8495 24.7696 REMARK 3 T TENSOR REMARK 3 T11: 0.5150 T22: 0.3870 REMARK 3 T33: 0.4922 T12: 0.2470 REMARK 3 T13: -0.0671 T23: -0.0864 REMARK 3 L TENSOR REMARK 3 L11: 5.0927 L22: 2.6070 REMARK 3 L33: 2.3413 L12: 3.1008 REMARK 3 L13: 0.1820 L23: -1.0853 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 0.0708 S13: -0.3853 REMARK 3 S21: -0.4075 S22: -0.0030 S23: 0.0778 REMARK 3 S31: 0.4805 S32: -0.3336 S33: -0.0950 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4872 -14.8483 23.1091 REMARK 3 T TENSOR REMARK 3 T11: 0.8990 T22: 0.3550 REMARK 3 T33: 0.6205 T12: 0.2163 REMARK 3 T13: 0.1227 T23: -0.0543 REMARK 3 L TENSOR REMARK 3 L11: 1.5544 L22: 0.2199 REMARK 3 L33: 1.0524 L12: -0.1774 REMARK 3 L13: -0.3198 L23: 0.4784 REMARK 3 S TENSOR REMARK 3 S11: -0.2098 S12: -0.0265 S13: -0.7342 REMARK 3 S21: -0.4667 S22: -0.0016 S23: -0.2204 REMARK 3 S31: 0.8954 S32: 0.0800 S33: 0.1835 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4783 7.8829 32.1792 REMARK 3 T TENSOR REMARK 3 T11: 0.3096 T22: 0.3747 REMARK 3 T33: 0.2870 T12: 0.2752 REMARK 3 T13: 0.0526 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 5.0012 L22: 2.7491 REMARK 3 L33: 1.8174 L12: -1.3037 REMARK 3 L13: 0.1470 L23: 0.5287 REMARK 3 S TENSOR REMARK 3 S11: 0.1877 S12: 0.2097 S13: 0.2140 REMARK 3 S21: -0.1466 S22: -0.2040 S23: 0.2316 REMARK 3 S31: 0.1159 S32: 0.0893 S33: 0.0284 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0678 -4.4543 35.5557 REMARK 3 T TENSOR REMARK 3 T11: 0.6800 T22: 0.9577 REMARK 3 T33: 0.5491 T12: 0.4714 REMARK 3 T13: 0.0976 T23: 0.1945 REMARK 3 L TENSOR REMARK 3 L11: 0.2177 L22: 0.3747 REMARK 3 L33: 0.8327 L12: 0.2827 REMARK 3 L13: -0.3778 L23: -0.4480 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -0.0644 S13: -0.2938 REMARK 3 S21: 0.0101 S22: -0.1355 S23: -0.4565 REMARK 3 S31: 0.2012 S32: 0.3323 S33: 0.1011 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2935 6.4518 32.4159 REMARK 3 T TENSOR REMARK 3 T11: 0.1223 T22: 0.5288 REMARK 3 T33: 0.2319 T12: 0.1945 REMARK 3 T13: 0.0806 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 2.0581 L22: 1.5608 REMARK 3 L33: 1.1434 L12: -1.2482 REMARK 3 L13: -0.2465 L23: -0.0527 REMARK 3 S TENSOR REMARK 3 S11: -0.1132 S12: -0.0188 S13: -0.3011 REMARK 3 S21: 0.0331 S22: -0.1028 S23: -0.0543 REMARK 3 S31: 0.2028 S32: 0.2612 S33: -0.0092 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.1740 14.8621 37.4753 REMARK 3 T TENSOR REMARK 3 T11: 0.0790 T22: 0.4342 REMARK 3 T33: 0.2522 T12: 0.0702 REMARK 3 T13: 0.0464 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 4.2753 L22: 2.3034 REMARK 3 L33: 4.2479 L12: -2.6931 REMARK 3 L13: 3.3615 L23: -2.5339 REMARK 3 S TENSOR REMARK 3 S11: -0.1957 S12: -0.6347 S13: 0.0203 REMARK 3 S21: 0.1299 S22: -0.0241 S23: -0.1682 REMARK 3 S31: -0.0502 S32: -0.1672 S33: -0.0499 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.0012 9.2880 48.4652 REMARK 3 T TENSOR REMARK 3 T11: 0.1716 T22: 0.6944 REMARK 3 T33: 0.3323 T12: -0.0392 REMARK 3 T13: -0.0861 T23: 0.1494 REMARK 3 L TENSOR REMARK 3 L11: 7.7093 L22: 7.3689 REMARK 3 L33: 2.9354 L12: 3.6595 REMARK 3 L13: -2.4239 L23: -1.6971 REMARK 3 S TENSOR REMARK 3 S11: -0.1171 S12: -0.1696 S13: 0.3786 REMARK 3 S21: 0.2527 S22: 0.0531 S23: -0.1524 REMARK 3 S31: -0.1711 S32: -0.2165 S33: 0.1119 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8741 13.9540 37.3064 REMARK 3 T TENSOR REMARK 3 T11: 0.3440 T22: 1.0295 REMARK 3 T33: 0.5291 T12: -0.2906 REMARK 3 T13: -0.0449 T23: 0.1572 REMARK 3 L TENSOR REMARK 3 L11: 0.1245 L22: 2.0851 REMARK 3 L33: 4.3685 L12: 0.2688 REMARK 3 L13: 0.3131 L23: -0.2081 REMARK 3 S TENSOR REMARK 3 S11: 0.1216 S12: -0.5114 S13: -0.1300 REMARK 3 S21: 0.1534 S22: -0.1247 S23: -0.6113 REMARK 3 S31: -0.0528 S32: 0.8985 S33: 0.0173 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4918 14.6182 22.3018 REMARK 3 T TENSOR REMARK 3 T11: 0.2294 T22: 0.3784 REMARK 3 T33: 0.1665 T12: 0.0077 REMARK 3 T13: 0.0455 T23: -0.0702 REMARK 3 L TENSOR REMARK 3 L11: 7.0395 L22: 1.9871 REMARK 3 L33: 2.0672 L12: -1.4153 REMARK 3 L13: 1.1075 L23: -2.0101 REMARK 3 S TENSOR REMARK 3 S11: 0.3222 S12: 0.2571 S13: -0.5696 REMARK 3 S21: -0.2138 S22: -0.3061 S23: -0.0062 REMARK 3 S31: 0.1532 S32: 0.6219 S33: -0.0461 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9284 8.8788 33.1160 REMARK 3 T TENSOR REMARK 3 T11: 0.2167 T22: 0.7190 REMARK 3 T33: 0.2344 T12: 0.1531 REMARK 3 T13: 0.0876 T23: 0.1150 REMARK 3 L TENSOR REMARK 3 L11: 4.7692 L22: 2.7423 REMARK 3 L33: 2.2374 L12: -3.2968 REMARK 3 L13: 2.6670 L23: -2.2138 REMARK 3 S TENSOR REMARK 3 S11: -0.0615 S12: -0.2560 S13: -0.0500 REMARK 3 S21: 0.0550 S22: -0.1492 S23: -0.2297 REMARK 3 S31: 0.2179 S32: 0.5376 S33: 0.1932 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4978 7.4044 42.8860 REMARK 3 T TENSOR REMARK 3 T11: 0.1316 T22: 0.3901 REMARK 3 T33: 0.1565 T12: 0.3053 REMARK 3 T13: 0.1691 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 2.8456 L22: 1.6353 REMARK 3 L33: 1.2599 L12: -1.2630 REMARK 3 L13: 0.5379 L23: -0.5965 REMARK 3 S TENSOR REMARK 3 S11: -0.1469 S12: -0.3377 S13: -0.4048 REMARK 3 S21: 0.1862 S22: 0.0643 S23: -0.1220 REMARK 3 S31: 0.3224 S32: 0.3452 S33: 0.0228 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8253 -1.3071 40.4074 REMARK 3 T TENSOR REMARK 3 T11: 0.4143 T22: 0.3743 REMARK 3 T33: 0.3397 T12: 0.1660 REMARK 3 T13: 0.1156 T23: 0.0501 REMARK 3 L TENSOR REMARK 3 L11: 4.0507 L22: 6.5712 REMARK 3 L33: 6.5046 L12: -3.1563 REMARK 3 L13: -3.6760 L23: 5.6118 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.3067 S13: -0.5525 REMARK 3 S21: -0.1762 S22: -0.2057 S23: -0.0194 REMARK 3 S31: 0.5466 S32: 0.4129 S33: 0.1361 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0309 29.2472 11.1582 REMARK 3 T TENSOR REMARK 3 T11: 0.4857 T22: 0.4206 REMARK 3 T33: 0.4181 T12: -0.0342 REMARK 3 T13: -0.0951 T23: 0.1064 REMARK 3 L TENSOR REMARK 3 L11: 4.4010 L22: 1.4159 REMARK 3 L33: 0.1484 L12: -2.2084 REMARK 3 L13: 0.6343 L23: -0.1880 REMARK 3 S TENSOR REMARK 3 S11: 0.1255 S12: 0.4842 S13: 0.5834 REMARK 3 S21: -0.5806 S22: -0.0880 S23: 0.4769 REMARK 3 S31: -0.4570 S32: -0.1890 S33: -0.0920 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1404 -13.1574 2.5359 REMARK 3 T TENSOR REMARK 3 T11: 0.2688 T22: 0.1836 REMARK 3 T33: 0.1655 T12: -0.0702 REMARK 3 T13: -0.0688 T23: 0.0520 REMARK 3 L TENSOR REMARK 3 L11: 3.4371 L22: 3.9761 REMARK 3 L33: 1.3942 L12: 0.3898 REMARK 3 L13: 0.5653 L23: 0.2955 REMARK 3 S TENSOR REMARK 3 S11: -0.1108 S12: 0.4105 S13: -0.0860 REMARK 3 S21: -0.1981 S22: 0.0501 S23: -0.2458 REMARK 3 S31: -0.0450 S32: 0.4872 S33: 0.0296 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 57 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2935 -23.6522 3.9856 REMARK 3 T TENSOR REMARK 3 T11: 0.4158 T22: 0.1714 REMARK 3 T33: 0.2365 T12: -0.0861 REMARK 3 T13: -0.0220 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 8.2595 L22: 2.3655 REMARK 3 L33: 3.2324 L12: 2.1177 REMARK 3 L13: 3.8515 L23: 1.2855 REMARK 3 S TENSOR REMARK 3 S11: 0.2177 S12: -0.1730 S13: -0.7356 REMARK 3 S21: 0.2989 S22: -0.0703 S23: -0.1743 REMARK 3 S31: 0.6181 S32: -0.0711 S33: -0.2015 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 85 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7710 -11.1115 7.4192 REMARK 3 T TENSOR REMARK 3 T11: 0.2229 T22: 0.0981 REMARK 3 T33: 0.2081 T12: -0.0419 REMARK 3 T13: 0.0346 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.5339 L22: 1.9990 REMARK 3 L33: 3.3026 L12: 0.5169 REMARK 3 L13: 1.0289 L23: 0.7074 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0545 S13: 0.1178 REMARK 3 S21: 0.3616 S22: -0.0954 S23: 0.2474 REMARK 3 S31: -0.1451 S32: -0.1736 S33: 0.1037 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 138 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0283 -17.8691 14.5373 REMARK 3 T TENSOR REMARK 3 T11: 0.5042 T22: 0.2318 REMARK 3 T33: 0.2875 T12: -0.1046 REMARK 3 T13: 0.1059 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 8.0143 L22: 2.7076 REMARK 3 L33: 3.9870 L12: 0.8823 REMARK 3 L13: 2.3923 L23: -0.5535 REMARK 3 S TENSOR REMARK 3 S11: 0.1516 S12: -0.4385 S13: -0.2633 REMARK 3 S21: 0.7829 S22: -0.1543 S23: 0.4554 REMARK 3 S31: 0.2552 S32: -0.5221 S33: 0.0023 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 163 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3941 13.0929 1.9088 REMARK 3 T TENSOR REMARK 3 T11: 0.2422 T22: 0.2642 REMARK 3 T33: 0.2740 T12: -0.1486 REMARK 3 T13: -0.1167 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.1100 L22: 3.5080 REMARK 3 L33: 1.8937 L12: 0.0610 REMARK 3 L13: -0.0038 L23: -0.6579 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: 0.1019 S13: 0.3032 REMARK 3 S21: -0.0079 S22: -0.0655 S23: -0.0234 REMARK 3 S31: 0.0805 S32: -0.3229 S33: 0.0211 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 250 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2414 26.4007 2.6265 REMARK 3 T TENSOR REMARK 3 T11: 0.3600 T22: 0.2976 REMARK 3 T33: 0.4106 T12: -0.0382 REMARK 3 T13: -0.1027 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 3.5120 L22: 7.1131 REMARK 3 L33: 4.7443 L12: -1.4836 REMARK 3 L13: 2.0546 L23: -4.9839 REMARK 3 S TENSOR REMARK 3 S11: -0.2133 S12: 0.0143 S13: 0.6569 REMARK 3 S21: -0.2239 S22: 0.0669 S23: 0.3140 REMARK 3 S31: -0.6096 S32: -0.3370 S33: 0.2098 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8850 2.1164 -11.2597 REMARK 3 T TENSOR REMARK 3 T11: 0.3829 T22: 0.3042 REMARK 3 T33: 0.2439 T12: -0.0693 REMARK 3 T13: -0.0629 T23: 0.1057 REMARK 3 L TENSOR REMARK 3 L11: 8.8987 L22: 4.9340 REMARK 3 L33: 5.4681 L12: 1.5801 REMARK 3 L13: 0.6349 L23: 1.3601 REMARK 3 S TENSOR REMARK 3 S11: 0.2675 S12: -0.0847 S13: -0.3179 REMARK 3 S21: 0.0317 S22: 0.0055 S23: 0.5165 REMARK 3 S31: 0.1558 S32: -0.8136 S33: -0.1960 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 12 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0749 2.0249 -13.8059 REMARK 3 T TENSOR REMARK 3 T11: 0.2385 T22: 0.1761 REMARK 3 T33: 0.1896 T12: -0.0338 REMARK 3 T13: -0.0350 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 4.5528 L22: 3.1362 REMARK 3 L33: 3.6731 L12: 1.7030 REMARK 3 L13: -1.5901 L23: -0.8953 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.2108 S13: -0.0696 REMARK 3 S21: -0.2664 S22: 0.0938 S23: -0.2988 REMARK 3 S31: 0.1118 S32: 0.3193 S33: -0.0785 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 52 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6817 0.3417 -12.8325 REMARK 3 T TENSOR REMARK 3 T11: 0.3298 T22: 0.1739 REMARK 3 T33: 0.2020 T12: -0.0624 REMARK 3 T13: -0.0689 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 3.6499 L22: 2.3213 REMARK 3 L33: 2.2228 L12: 1.3276 REMARK 3 L13: -0.5284 L23: -0.5285 REMARK 3 S TENSOR REMARK 3 S11: -0.0426 S12: 0.3891 S13: 0.1953 REMARK 3 S21: -0.3229 S22: 0.1808 S23: 0.0392 REMARK 3 S31: 0.0392 S32: -0.0733 S33: -0.1180 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 91 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8793 11.6878 -17.1734 REMARK 3 T TENSOR REMARK 3 T11: 0.3885 T22: 0.2463 REMARK 3 T33: 0.2990 T12: -0.0407 REMARK 3 T13: -0.0494 T23: 0.0998 REMARK 3 L TENSOR REMARK 3 L11: 2.2010 L22: 7.1468 REMARK 3 L33: 8.9627 L12: -0.4512 REMARK 3 L13: 2.7300 L23: 5.7094 REMARK 3 S TENSOR REMARK 3 S11: -0.0448 S12: 0.1375 S13: 0.2238 REMARK 3 S21: -0.2661 S22: 0.0924 S23: 0.1343 REMARK 3 S31: -0.5343 S32: 0.0970 S33: -0.0185 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5710 -20.0871 8.1819 REMARK 3 T TENSOR REMARK 3 T11: 0.3047 T22: 0.1940 REMARK 3 T33: 0.2454 T12: -0.0148 REMARK 3 T13: -0.0624 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 4.9265 L22: 2.7863 REMARK 3 L33: 4.4277 L12: -1.3356 REMARK 3 L13: 1.4316 L23: -0.5301 REMARK 3 S TENSOR REMARK 3 S11: 0.3227 S12: -0.0552 S13: -0.7561 REMARK 3 S21: -0.0407 S22: -0.1072 S23: 0.4496 REMARK 3 S31: 0.6844 S32: -0.5435 S33: -0.3098 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000253642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85212 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 33.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1MHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 20% (W/V) PEG 4000, 30% REMARK 280 (V/V) ETHYLENE GLYCOL, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 SER D 276 REMARK 465 HIS D 277 REMARK 465 HIS D 278 REMARK 465 HIS D 279 REMARK 465 HIS D 280 REMARK 465 HIS D 281 REMARK 465 HIS D 282 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS D 101 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -122.81 57.69 REMARK 500 GLU A 41 -6.31 83.83 REMARK 500 SER A 131 -15.65 -148.07 REMARK 500 PRO A 210 -176.31 -68.53 REMARK 500 GLU A 222 134.57 -174.88 REMARK 500 GLN B 2 83.73 -173.72 REMARK 500 TRP B 60 -4.83 77.57 REMARK 500 ASP D 29 -123.26 52.16 REMARK 500 TYR D 123 -53.26 -122.05 REMARK 500 SER D 131 -31.20 -131.75 REMARK 500 ASP D 220 -95.04 24.76 REMARK 500 LEU D 224 36.20 -140.93 REMARK 500 TRP E 60 -3.42 84.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 431 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH D 432 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH D 433 DISTANCE = 6.71 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR D 233 O REMARK 620 2 TYR E 26 OH 107.4 REMARK 620 N 1 DBREF 7LFI A 1 276 UNP Q31093 Q31093_MOUSE 25 301 DBREF 7LFI B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 7LFI C 1 7 UNP P03888 NU1M_MOUSE 1 7 DBREF 7LFI D 1 276 UNP Q31093 Q31093_MOUSE 25 301 DBREF 7LFI E 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 7LFI F 1 7 UNP P03888 NU1M_MOUSE 1 7 SEQADV 7LFI A UNP Q31093 GLY 299 DELETION SEQADV 7LFI HIS A 277 UNP Q31093 EXPRESSION TAG SEQADV 7LFI HIS A 278 UNP Q31093 EXPRESSION TAG SEQADV 7LFI HIS A 279 UNP Q31093 EXPRESSION TAG SEQADV 7LFI HIS A 280 UNP Q31093 EXPRESSION TAG SEQADV 7LFI HIS A 281 UNP Q31093 EXPRESSION TAG SEQADV 7LFI HIS A 282 UNP Q31093 EXPRESSION TAG SEQADV 7LFI ASP B 85 UNP P01887 ALA 105 VARIANT SEQADV 7LFI D UNP Q31093 GLY 299 DELETION SEQADV 7LFI HIS D 277 UNP Q31093 EXPRESSION TAG SEQADV 7LFI HIS D 278 UNP Q31093 EXPRESSION TAG SEQADV 7LFI HIS D 279 UNP Q31093 EXPRESSION TAG SEQADV 7LFI HIS D 280 UNP Q31093 EXPRESSION TAG SEQADV 7LFI HIS D 281 UNP Q31093 EXPRESSION TAG SEQADV 7LFI HIS D 282 UNP Q31093 EXPRESSION TAG SEQADV 7LFI ASP E 85 UNP P01887 ALA 105 VARIANT SEQRES 1 A 282 GLY SER HIS SER LEU ARG TYR PHE HIS THR ALA VAL SER SEQRES 2 A 282 ARG PRO GLY ARG GLY GLU PRO GLN TYR ILE SER VAL GLY SEQRES 3 A 282 TYR VAL ASP ASP VAL GLN PHE GLN ARG CYS ASP SER ILE SEQRES 4 A 282 GLU GLU ILE PRO ARG MET GLU PRO ARG ALA PRO TRP MET SEQRES 5 A 282 GLU LYS GLU ARG PRO GLU TYR TRP LYS GLU LEU LYS LEU SEQRES 6 A 282 LYS VAL LYS ASN ILE ALA GLN SER ALA ARG ALA ASN LEU SEQRES 7 A 282 ARG THR LEU LEU ARG TYR TYR ASN GLN SER GLU GLY GLY SEQRES 8 A 282 SER HIS ILE LEU GLN TRP MET VAL SER CYS GLU VAL GLY SEQRES 9 A 282 PRO ASP MET ARG LEU LEU GLY ALA HIS TYR GLN ALA ALA SEQRES 10 A 282 TYR ASP GLY SER ASP TYR ILE THR LEU ASN GLU ASP LEU SEQRES 11 A 282 SER SER TRP THR ALA VAL ASP MET VAL SER GLN ILE THR SEQRES 12 A 282 LYS SER ARG LEU GLU SER ALA GLY THR ALA GLU TYR PHE SEQRES 13 A 282 ARG ALA TYR VAL GLU GLY GLU CYS LEU GLU LEU LEU HIS SEQRES 14 A 282 ARG PHE LEU ARG ASN GLY LYS GLU ILE LEU GLN ARG ALA SEQRES 15 A 282 ASP PRO PRO LYS ALA HIS VAL ALA HIS HIS PRO ARG PRO SEQRES 16 A 282 LYS GLY ASP VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 282 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LYS ASP GLU SEQRES 18 A 282 GLU ASP LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 282 PRO SER GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 282 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS TYR SEQRES 21 A 282 VAL HIS HIS GLU GLY LEU THR GLU PRO LEU ALA LEU LYS SEQRES 22 A 282 TRP ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 B 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 B 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 B 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 7 FME PHE PHE ILE ASN ILE LEU SEQRES 1 D 282 GLY SER HIS SER LEU ARG TYR PHE HIS THR ALA VAL SER SEQRES 2 D 282 ARG PRO GLY ARG GLY GLU PRO GLN TYR ILE SER VAL GLY SEQRES 3 D 282 TYR VAL ASP ASP VAL GLN PHE GLN ARG CYS ASP SER ILE SEQRES 4 D 282 GLU GLU ILE PRO ARG MET GLU PRO ARG ALA PRO TRP MET SEQRES 5 D 282 GLU LYS GLU ARG PRO GLU TYR TRP LYS GLU LEU LYS LEU SEQRES 6 D 282 LYS VAL LYS ASN ILE ALA GLN SER ALA ARG ALA ASN LEU SEQRES 7 D 282 ARG THR LEU LEU ARG TYR TYR ASN GLN SER GLU GLY GLY SEQRES 8 D 282 SER HIS ILE LEU GLN TRP MET VAL SER CYS GLU VAL GLY SEQRES 9 D 282 PRO ASP MET ARG LEU LEU GLY ALA HIS TYR GLN ALA ALA SEQRES 10 D 282 TYR ASP GLY SER ASP TYR ILE THR LEU ASN GLU ASP LEU SEQRES 11 D 282 SER SER TRP THR ALA VAL ASP MET VAL SER GLN ILE THR SEQRES 12 D 282 LYS SER ARG LEU GLU SER ALA GLY THR ALA GLU TYR PHE SEQRES 13 D 282 ARG ALA TYR VAL GLU GLY GLU CYS LEU GLU LEU LEU HIS SEQRES 14 D 282 ARG PHE LEU ARG ASN GLY LYS GLU ILE LEU GLN ARG ALA SEQRES 15 D 282 ASP PRO PRO LYS ALA HIS VAL ALA HIS HIS PRO ARG PRO SEQRES 16 D 282 LYS GLY ASP VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 D 282 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LYS ASP GLU SEQRES 18 D 282 GLU ASP LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 D 282 PRO SER GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 D 282 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS TYR SEQRES 21 D 282 VAL HIS HIS GLU GLY LEU THR GLU PRO LEU ALA LEU LYS SEQRES 22 D 282 TRP ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 E 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 E 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 E 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 E 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 E 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 E 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 E 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 E 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 F 7 FME PHE PHE ILE ASN ILE LEU MODRES 7LFI FME C 1 MET MODIFIED RESIDUE MODRES 7LFI FME F 1 MET MODIFIED RESIDUE HET FME C 1 20 HET FME F 1 20 HET NAG A2001 27 HET NA A2002 1 HET NA E 101 1 HETNAM FME N-FORMYLMETHIONINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 FME 2(C6 H11 N O3 S) FORMUL 7 NAG C8 H15 N O6 FORMUL 8 NA 2(NA 1+) FORMUL 10 HOH *389(H2 O) HELIX 1 AA1 ALA A 49 GLU A 55 5 7 HELIX 2 AA2 ARG A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 THR A 152 GLU A 161 1 10 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLU A 253 TYR A 257 5 5 HELIX 8 AA8 ALA D 49 GLU D 55 5 7 HELIX 9 AA9 ARG D 56 TYR D 85 1 30 HELIX 10 AB1 ASP D 137 GLY D 151 1 15 HELIX 11 AB2 THR D 152 GLY D 162 1 11 HELIX 12 AB3 GLY D 162 GLY D 175 1 14 HELIX 13 AB4 GLY D 175 GLN D 180 1 6 HELIX 14 AB5 GLU D 253 GLN D 255 5 3 SHEET 1 AA1 8 ILE A 42 PRO A 47 0 SHEET 2 AA1 8 VAL A 31 ILE A 39 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 TYR A 22 VAL A 28 -1 N SER A 24 O CYS A 36 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 ILE A 94 VAL A 103 -1 O TRP A 97 N HIS A 9 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N GLU A 102 SHEET 7 AA1 8 SER A 121 LEU A 126 -1 O LEU A 126 N TYR A 114 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N THR A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 VAL A 199 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 VAL A 249 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 VAL A 199 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 VAL A 249 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 3 THR A 214 GLN A 218 0 SHEET 2 AA4 3 THR A 258 HIS A 262 -1 O TYR A 260 N THR A 216 SHEET 3 AA4 3 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 GLN B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA5 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 AA6 4 GLN B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 LYS B 44 LYS B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 AA7 4 TYR B 78 LYS B 83 -1 O ARG B 81 N GLN B 38 SHEET 4 AA7 4 LYS B 91 TYR B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 AA8 8 ILE D 42 PRO D 47 0 SHEET 2 AA8 8 VAL D 31 ILE D 39 -1 N ILE D 39 O ILE D 42 SHEET 3 AA8 8 TYR D 22 VAL D 28 -1 N SER D 24 O CYS D 36 SHEET 4 AA8 8 HIS D 3 VAL D 12 -1 N ARG D 6 O TYR D 27 SHEET 5 AA8 8 ILE D 94 VAL D 103 -1 O LEU D 95 N ALA D 11 SHEET 6 AA8 8 LEU D 109 TYR D 118 -1 O LEU D 110 N GLU D 102 SHEET 7 AA8 8 SER D 121 LEU D 126 -1 O LEU D 126 N TYR D 114 SHEET 8 AA8 8 TRP D 133 ALA D 135 -1 O THR D 134 N THR D 125 SHEET 1 AA9 4 LYS D 186 PRO D 193 0 SHEET 2 AA9 4 VAL D 199 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AA9 4 PHE D 241 VAL D 249 -1 O ALA D 245 N CYS D 203 SHEET 4 AA9 4 GLU D 229 LEU D 230 -1 N GLU D 229 O ALA D 246 SHEET 1 AB1 4 LYS D 186 PRO D 193 0 SHEET 2 AB1 4 VAL D 199 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AB1 4 PHE D 241 VAL D 249 -1 O ALA D 245 N CYS D 203 SHEET 4 AB1 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 AB2 4 GLU D 222 ASP D 223 0 SHEET 2 AB2 4 THR D 214 LYS D 219 -1 N LYS D 219 O GLU D 222 SHEET 3 AB2 4 TYR D 257 HIS D 262 -1 O TYR D 260 N THR D 216 SHEET 4 AB2 4 LEU D 270 LEU D 272 -1 O LEU D 272 N CYS D 259 SHEET 1 AB3 4 GLN E 6 SER E 11 0 SHEET 2 AB3 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AB3 4 PHE E 62 PHE E 70 -1 O THR E 68 N LEU E 23 SHEET 4 AB3 4 GLU E 50 MET E 51 -1 N GLU E 50 O HIS E 67 SHEET 1 AB4 4 GLN E 6 SER E 11 0 SHEET 2 AB4 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AB4 4 PHE E 62 PHE E 70 -1 O THR E 68 N LEU E 23 SHEET 4 AB4 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63 SHEET 1 AB5 4 LYS E 44 LYS E 45 0 SHEET 2 AB5 4 GLU E 36 LYS E 41 -1 N LYS E 41 O LYS E 44 SHEET 3 AB5 4 TYR E 78 LYS E 83 -1 O ALA E 79 N LEU E 40 SHEET 4 AB5 4 LYS E 91 TYR E 94 -1 O LYS E 91 N VAL E 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.12 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.08 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.07 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.13 SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.05 SSBOND 6 CYS E 25 CYS E 80 1555 1555 2.06 LINK ND2 ASN A 86 C1 NAG A2001 1555 1555 1.45 LINK C FME C 1 N PHE C 2 1555 1555 1.33 LINK C FME F 1 N PHE F 2 1555 1555 1.33 LINK OE1 GLN A 96 NA NA A2002 1555 1555 2.21 LINK O THR D 233 NA NA E 101 1555 1555 2.98 LINK OH TYR E 26 NA NA E 101 1555 1555 2.30 CISPEP 1 TYR A 209 PRO A 210 0 0.47 CISPEP 2 HIS B 31 PRO B 32 0 0.95 CISPEP 3 TYR D 209 PRO D 210 0 1.04 CISPEP 4 HIS E 31 PRO E 32 0 4.57 CRYST1 63.567 68.646 54.973 101.99 95.10 113.50 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015731 0.006839 0.003346 0.00000 SCALE2 0.000000 0.015885 0.004387 0.00000 SCALE3 0.000000 0.000000 0.018947 0.00000