HEADER IMMUNE SYSTEM 17-JAN-21 7LFM TITLE MODEL OF MHC CLASS IB H2-M3 WITH MOUSE ND1 N-TERMINAL HEPTAPEPTIDE, TITLE 2 VAL MUTANT, TRICLINIC CELL, REFINED AT 1.60 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTOCOMPATIBILITY 2, M REGION LOCUS 3; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: MHC CLASS IB ANTIGEN H2-M3, MHC CLASS I ANTIGEN H-2M3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: B, E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HEPTAPEPTIDE FROM NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1; COMPND 13 CHAIN: C, F; COMPND 14 FRAGMENT: FIRST SEVEN AMINO-TERMINAL RESIDUES; COMPND 15 SYNONYM: NADH DEHYDROGENASE SUBUNIT 1; COMPND 16 EC: 7.1.1.2; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES; COMPND 19 OTHER_DETAILS: THE N-TERMINAL METHIONINE IS N-FORMYLMETHIONINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-M3, H-2M3; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRMHA-3; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: B2M; SOURCE 15 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PRMHA-3; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 22 ORGANISM_COMMON: MOUSE; SOURCE 23 ORGANISM_TAXID: 10090 KEYWDS HISTOCOMPATIBILITY ANTIGEN/PEPTIDE, HISTOCOMPATIBILITY ANTIGEN- KEYWDS 2 PEPTIDE COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR D.R.TOMCHICK,J.DEISENHOFER,S.SHEN REVDAT 3 25-OCT-23 7LFM 1 REMARK REVDAT 2 28-DEC-22 7LFM 1 JRNL REVDAT 1 14-JUL-21 7LFM 0 JRNL AUTH A.STRAND,S.T.SHEN,D.R.TOMCHICK,J.WANG,C.R.WANG,J.DEISENHOFER JRNL TITL STRUCTURE AND DYNAMICS OF MAJOR HISTOCOMPATIBILITY CLASS IB JRNL TITL 2 MOLECULE H2-M3 COMPLEXED WITH MITOCHONDRIAL-DERIVED JRNL TITL 3 PEPTIDES. JRNL REF J.BIOMOL.STRUCT.DYN. V. 40 10300 2022 JRNL REFN ESSN 1538-0254 JRNL PMID 34176438 JRNL DOI 10.1080/07391102.2021.1942214 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.R.WANG,A.R.CASTANO,P.A.PETERSON,C.SLAUGHTER,K.F.LINDAHL, REMARK 1 AUTH 2 J.DEISENHOFER REMARK 1 TITL NONCLASSICAL BINDING OF FORMYLATED PEPTIDE IN CRYSTAL REMARK 1 TITL 2 STRUCTURE OF THE MHC CLASS IB MOLECULE H2-M3. REMARK 1 REF CELL V. 82 655 1995 REMARK 1 PMID 7664344 REMARK 1 DOI 10.1016/0092-8674(95)90037-3 REMARK 1 REFERENCE 2 REMARK 1 AUTH C.R.WANG,B.E.LOVELAND,K.F.LINDAHL REMARK 1 TITL H2-M3 ENCODES THE MHC CLASS I MOLECULE PRESENTING THE REMARK 1 TITL 2 MATERNALLY TRANSMITTED ANTIGEN OF THE MOUSE. REMARK 1 REF CELL V. 66 335 1991 REMARK 1 PMID 1855254 REMARK 1 DOI 10.1016/0092-8674(91)90623-7 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2-3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 3 NUMBER OF REFLECTIONS : 87555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.0900 - 3.6600 0.90 7556 161 0.1632 0.1816 REMARK 3 2 3.6600 - 2.9000 0.91 7684 141 0.1709 0.2105 REMARK 3 3 2.9000 - 2.5400 0.93 7915 157 0.1740 0.1963 REMARK 3 4 2.5400 - 2.3100 0.93 7822 136 0.1702 0.2205 REMARK 3 5 2.3100 - 2.1400 0.92 7805 147 0.1730 0.2100 REMARK 3 6 2.1400 - 2.0200 0.90 7622 129 0.1805 0.2130 REMARK 3 7 2.0200 - 1.9100 0.89 7468 152 0.2027 0.2750 REMARK 3 8 1.9100 - 1.8300 0.87 7340 161 0.2274 0.2642 REMARK 3 9 1.8300 - 1.7600 0.86 7216 160 0.2498 0.3078 REMARK 3 10 1.7600 - 1.7000 0.82 6923 150 0.2651 0.2802 REMARK 3 11 1.7000 - 1.6500 0.74 6211 123 0.2836 0.2853 REMARK 3 12 1.6500 - 1.6000 0.51 4287 89 0.2935 0.3354 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.206 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6427 REMARK 3 ANGLE : 1.118 8725 REMARK 3 CHIRALITY : 0.063 912 REMARK 3 PLANARITY : 0.008 1134 REMARK 3 DIHEDRAL : 14.590 2407 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 31 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1573 20.3394 21.0965 REMARK 3 T TENSOR REMARK 3 T11: 0.1537 T22: 0.1599 REMARK 3 T33: 0.0970 T12: -0.0125 REMARK 3 T13: -0.0040 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 3.6978 L22: 4.1994 REMARK 3 L33: 2.6745 L12: -1.8167 REMARK 3 L13: -1.1326 L23: 0.5050 REMARK 3 S TENSOR REMARK 3 S11: -0.0540 S12: -0.2273 S13: 0.2097 REMARK 3 S21: 0.1697 S22: 0.0400 S23: -0.1876 REMARK 3 S31: -0.0620 S32: 0.2518 S33: 0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0032 31.1794 16.9998 REMARK 3 T TENSOR REMARK 3 T11: 0.3090 T22: 0.2048 REMARK 3 T33: 0.2021 T12: -0.0326 REMARK 3 T13: 0.0022 T23: 0.0569 REMARK 3 L TENSOR REMARK 3 L11: 8.5204 L22: 2.7707 REMARK 3 L33: 1.3045 L12: -2.5206 REMARK 3 L13: -1.5980 L23: 0.9726 REMARK 3 S TENSOR REMARK 3 S11: 0.2657 S12: 0.5287 S13: 1.2310 REMARK 3 S21: -0.1608 S22: -0.2435 S23: -0.3092 REMARK 3 S31: -0.2958 S32: 0.0109 S33: -0.0090 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4751 21.4897 8.8943 REMARK 3 T TENSOR REMARK 3 T11: 0.1892 T22: 0.1397 REMARK 3 T33: 0.1215 T12: -0.0068 REMARK 3 T13: -0.0320 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 3.3982 L22: 1.8979 REMARK 3 L33: 2.4542 L12: -0.1796 REMARK 3 L13: 0.1314 L23: 0.2346 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.3447 S13: 0.0854 REMARK 3 S21: -0.2082 S22: -0.0572 S23: 0.1875 REMARK 3 S31: 0.0415 S32: 0.0558 S33: 0.0821 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 163 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.7058 -3.3879 21.6002 REMARK 3 T TENSOR REMARK 3 T11: 0.1756 T22: 0.2222 REMARK 3 T33: 0.1847 T12: 0.0654 REMARK 3 T13: 0.0141 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.6832 L22: 3.4853 REMARK 3 L33: 3.0292 L12: 1.3146 REMARK 3 L13: -1.3794 L23: -2.4661 REMARK 3 S TENSOR REMARK 3 S11: -0.1422 S12: 0.0563 S13: -0.3336 REMARK 3 S21: -0.1699 S22: -0.0714 S23: -0.2049 REMARK 3 S31: 0.1813 S32: 0.0196 S33: 0.2919 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5438 -8.3497 26.1972 REMARK 3 T TENSOR REMARK 3 T11: 0.2354 T22: 0.2034 REMARK 3 T33: 0.2412 T12: 0.0265 REMARK 3 T13: 0.0010 T23: -0.0571 REMARK 3 L TENSOR REMARK 3 L11: 5.3442 L22: 3.1106 REMARK 3 L33: 3.2433 L12: 2.5009 REMARK 3 L13: -0.1432 L23: -1.2981 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: 0.1166 S13: -0.3419 REMARK 3 S21: -0.3000 S22: 0.0876 S23: 0.2535 REMARK 3 S31: 0.4021 S32: -0.3859 S33: -0.0548 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7714 -16.0426 25.3680 REMARK 3 T TENSOR REMARK 3 T11: 0.3782 T22: 0.1569 REMARK 3 T33: 0.4036 T12: 0.0079 REMARK 3 T13: 0.0953 T23: -0.0642 REMARK 3 L TENSOR REMARK 3 L11: 3.6852 L22: 0.7675 REMARK 3 L33: 3.3623 L12: 1.0340 REMARK 3 L13: -1.1831 L23: -1.5348 REMARK 3 S TENSOR REMARK 3 S11: -0.3423 S12: 0.1476 S13: -0.9277 REMARK 3 S21: -0.4260 S22: 0.0077 S23: -0.1733 REMARK 3 S31: 0.9288 S32: -0.1300 S33: 0.3158 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7307 7.5879 33.0322 REMARK 3 T TENSOR REMARK 3 T11: 0.1124 T22: 0.1870 REMARK 3 T33: 0.1233 T12: -0.0152 REMARK 3 T13: 0.0360 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 6.7636 L22: 6.0047 REMARK 3 L33: 7.1553 L12: -3.0853 REMARK 3 L13: 3.7350 L23: -3.2842 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: -0.1524 S13: -0.1182 REMARK 3 S21: -0.1117 S22: 0.2192 S23: 0.5186 REMARK 3 S31: -0.0877 S32: -0.6040 S33: -0.1759 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6216 0.8213 35.5171 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: 0.1793 REMARK 3 T33: 0.1301 T12: 0.0297 REMARK 3 T13: 0.0081 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 3.5592 L22: 6.9791 REMARK 3 L33: 1.7640 L12: -3.7285 REMARK 3 L13: 0.6212 L23: -0.7142 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: -0.0413 S13: -0.1681 REMARK 3 S21: 0.1220 S22: -0.0258 S23: -0.1739 REMARK 3 S31: 0.0453 S32: 0.1837 S33: -0.0151 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6746 14.4835 38.3106 REMARK 3 T TENSOR REMARK 3 T11: 0.1703 T22: 0.2127 REMARK 3 T33: 0.1650 T12: -0.0311 REMARK 3 T13: 0.0371 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 3.5164 L22: 5.5367 REMARK 3 L33: 2.1274 L12: -4.1717 REMARK 3 L13: 0.9427 L23: -1.3417 REMARK 3 S TENSOR REMARK 3 S11: -0.1440 S12: -0.1245 S13: -0.1811 REMARK 3 S21: 0.3769 S22: 0.1740 S23: 0.0808 REMARK 3 S31: -0.5022 S32: 0.2863 S33: 0.0207 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6193 9.0193 49.7932 REMARK 3 T TENSOR REMARK 3 T11: 0.3173 T22: 0.3496 REMARK 3 T33: 0.0907 T12: 0.0543 REMARK 3 T13: -0.0237 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 8.7677 L22: 4.2907 REMARK 3 L33: 5.0331 L12: 2.3332 REMARK 3 L13: -5.3452 L23: -3.9431 REMARK 3 S TENSOR REMARK 3 S11: 0.2785 S12: -0.1193 S13: 0.7624 REMARK 3 S21: 1.3124 S22: 0.1753 S23: -0.0856 REMARK 3 S31: -0.1231 S32: 0.5878 S33: -0.2869 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 47 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.2215 12.8682 39.0754 REMARK 3 T TENSOR REMARK 3 T11: 0.3289 T22: 0.5508 REMARK 3 T33: 0.2735 T12: -0.0814 REMARK 3 T13: -0.0591 T23: 0.0482 REMARK 3 L TENSOR REMARK 3 L11: 5.0597 L22: 5.6084 REMARK 3 L33: 2.5370 L12: -0.7203 REMARK 3 L13: 3.5845 L23: -0.4788 REMARK 3 S TENSOR REMARK 3 S11: 0.1575 S12: -0.7665 S13: 0.3560 REMARK 3 S21: 0.6919 S22: 0.1933 S23: -0.9780 REMARK 3 S31: 0.0936 S32: 0.8986 S33: 0.2821 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6500 13.6541 22.8240 REMARK 3 T TENSOR REMARK 3 T11: 0.2523 T22: 0.1642 REMARK 3 T33: 0.1280 T12: 0.0045 REMARK 3 T13: 0.0394 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 8.2530 L22: 2.1851 REMARK 3 L33: 4.7594 L12: -1.4641 REMARK 3 L13: 3.8304 L23: -2.2586 REMARK 3 S TENSOR REMARK 3 S11: 0.1866 S12: 0.0965 S13: -0.5708 REMARK 3 S21: -0.1907 S22: -0.0651 S23: -0.0166 REMARK 3 S31: 0.2867 S32: 0.2059 S33: -0.0794 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1329 7.5115 40.4849 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.1316 REMARK 3 T33: 0.1159 T12: -0.0179 REMARK 3 T13: 0.0144 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 4.0368 L22: 2.6780 REMARK 3 L33: 3.5889 L12: -2.7175 REMARK 3 L13: 1.6940 L23: -0.9428 REMARK 3 S TENSOR REMARK 3 S11: -0.1700 S12: -0.3309 S13: -0.0873 REMARK 3 S21: 0.2247 S22: 0.1463 S23: 0.0432 REMARK 3 S31: 0.2147 S32: 0.0168 S33: 0.0384 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2915 -1.6016 41.9210 REMARK 3 T TENSOR REMARK 3 T11: 0.1881 T22: 0.2083 REMARK 3 T33: 0.1894 T12: -0.0189 REMARK 3 T13: 0.0067 T23: 0.0649 REMARK 3 L TENSOR REMARK 3 L11: 6.1189 L22: 8.1031 REMARK 3 L33: 8.8076 L12: -4.1855 REMARK 3 L13: -5.1416 L23: 7.0204 REMARK 3 S TENSOR REMARK 3 S11: -0.2183 S12: -0.5223 S13: -0.5573 REMARK 3 S21: 0.4152 S22: 0.2292 S23: 0.1971 REMARK 3 S31: 0.3296 S32: 0.2396 S33: 0.0447 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6266 27.8758 11.2108 REMARK 3 T TENSOR REMARK 3 T11: 0.2297 T22: 0.2592 REMARK 3 T33: 0.2544 T12: -0.0098 REMARK 3 T13: -0.0147 T23: 0.0826 REMARK 3 L TENSOR REMARK 3 L11: 6.0126 L22: 7.7221 REMARK 3 L33: 1.2187 L12: -5.4442 REMARK 3 L13: 1.4487 L23: -0.6244 REMARK 3 S TENSOR REMARK 3 S11: 0.6417 S12: 0.7601 S13: 0.4348 REMARK 3 S21: -0.9286 S22: -0.4388 S23: 0.5590 REMARK 3 S31: 0.0088 S32: -0.1976 S33: -0.2329 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2445 -11.7717 1.5761 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.2331 REMARK 3 T33: 0.1607 T12: -0.0490 REMARK 3 T13: 0.0140 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 3.6217 L22: 2.7881 REMARK 3 L33: 3.8392 L12: 1.4339 REMARK 3 L13: 1.8593 L23: -0.4896 REMARK 3 S TENSOR REMARK 3 S11: -0.1576 S12: 0.5666 S13: -0.0630 REMARK 3 S21: -0.3848 S22: 0.1710 S23: -0.2451 REMARK 3 S31: -0.0563 S32: 0.5250 S33: -0.0983 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 31 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8805 -14.8316 4.7559 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.2590 REMARK 3 T33: 0.2272 T12: 0.0125 REMARK 3 T13: 0.0341 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 5.0007 L22: 6.4766 REMARK 3 L33: 3.0235 L12: 2.0838 REMARK 3 L13: 1.0910 L23: 1.0096 REMARK 3 S TENSOR REMARK 3 S11: -0.2910 S12: 0.5692 S13: -0.3259 REMARK 3 S21: -0.2820 S22: 0.3312 S23: -0.5093 REMARK 3 S31: 0.0729 S32: 0.6919 S33: -0.0363 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 57 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5650 -23.1123 4.4798 REMARK 3 T TENSOR REMARK 3 T11: 0.2679 T22: 0.1475 REMARK 3 T33: 0.1799 T12: -0.0076 REMARK 3 T13: 0.0822 T23: -0.0329 REMARK 3 L TENSOR REMARK 3 L11: 9.2592 L22: 2.4324 REMARK 3 L33: 4.8460 L12: 1.4758 REMARK 3 L13: 5.2362 L23: 0.9257 REMARK 3 S TENSOR REMARK 3 S11: 0.4085 S12: 0.1869 S13: -0.6349 REMARK 3 S21: 0.1133 S22: -0.1055 S23: -0.1909 REMARK 3 S31: 0.5115 S32: 0.1217 S33: -0.3518 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 85 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7693 -9.9005 6.8146 REMARK 3 T TENSOR REMARK 3 T11: 0.1309 T22: 0.1274 REMARK 3 T33: 0.1513 T12: 0.0047 REMARK 3 T13: 0.0225 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.6171 L22: 2.0267 REMARK 3 L33: 3.8426 L12: 0.6228 REMARK 3 L13: 1.5201 L23: 0.9077 REMARK 3 S TENSOR REMARK 3 S11: -0.0827 S12: 0.0087 S13: 0.0920 REMARK 3 S21: -0.0010 S22: -0.0439 S23: 0.0472 REMARK 3 S31: -0.2652 S32: -0.0760 S33: 0.1373 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 138 THROUGH 162 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8794 -16.1446 13.8363 REMARK 3 T TENSOR REMARK 3 T11: 0.2402 T22: 0.1405 REMARK 3 T33: 0.1712 T12: -0.0209 REMARK 3 T13: 0.0696 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 8.6908 L22: 2.7402 REMARK 3 L33: 4.5978 L12: 2.0667 REMARK 3 L13: 3.0327 L23: 0.3979 REMARK 3 S TENSOR REMARK 3 S11: 0.3096 S12: -0.6018 S13: -0.0122 REMARK 3 S21: 0.3729 S22: -0.3034 S23: 0.3267 REMARK 3 S31: 0.2096 S32: -0.4951 S33: 0.0188 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 163 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9538 -2.1875 16.0112 REMARK 3 T TENSOR REMARK 3 T11: 0.2446 T22: 0.2334 REMARK 3 T33: 0.2162 T12: -0.0761 REMARK 3 T13: -0.0494 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 2.7033 L22: 5.0068 REMARK 3 L33: 1.9751 L12: 1.1856 REMARK 3 L13: 0.4125 L23: -1.5539 REMARK 3 S TENSOR REMARK 3 S11: 0.2610 S12: -0.3354 S13: -0.2318 REMARK 3 S21: 0.7001 S22: -0.3921 S23: -0.6057 REMARK 3 S31: -0.1971 S32: 0.3078 S33: 0.2153 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 186 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2039 20.6257 -1.3833 REMARK 3 T TENSOR REMARK 3 T11: 0.3889 T22: 0.3263 REMARK 3 T33: 0.6696 T12: 0.0814 REMARK 3 T13: -0.3261 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.8499 L22: 3.0475 REMARK 3 L33: 3.9232 L12: 2.2340 REMARK 3 L13: 0.5197 L23: 2.3574 REMARK 3 S TENSOR REMARK 3 S11: -0.5215 S12: 0.3266 S13: 0.9258 REMARK 3 S21: -0.7739 S22: -0.3033 S23: 1.2138 REMARK 3 S31: -0.8073 S32: -0.7435 S33: 0.1767 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2815 2.0098 -11.7375 REMARK 3 T TENSOR REMARK 3 T11: 0.1278 T22: 0.1481 REMARK 3 T33: 0.2627 T12: 0.0226 REMARK 3 T13: -0.0204 T23: 0.0499 REMARK 3 L TENSOR REMARK 3 L11: 6.5128 L22: 4.7134 REMARK 3 L33: 4.8627 L12: 3.8899 REMARK 3 L13: 1.2998 L23: 0.9972 REMARK 3 S TENSOR REMARK 3 S11: 0.1721 S12: 0.1156 S13: 0.5417 REMARK 3 S21: 0.0345 S22: 0.0736 S23: 0.5158 REMARK 3 S31: 0.0030 S32: -0.1850 S33: -0.1557 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 12 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0995 12.9476 -9.8198 REMARK 3 T TENSOR REMARK 3 T11: 0.3373 T22: 0.3982 REMARK 3 T33: 0.4483 T12: -0.2604 REMARK 3 T13: -0.0475 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 4.5455 L22: 1.8362 REMARK 3 L33: 5.6541 L12: 2.9058 REMARK 3 L13: -5.1248 L23: -3.2329 REMARK 3 S TENSOR REMARK 3 S11: 0.1684 S12: -0.6346 S13: 0.5231 REMARK 3 S21: 0.0694 S22: 0.0014 S23: 0.0367 REMARK 3 S31: -1.3659 S32: 0.9854 S33: -0.0543 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 20 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3385 2.8626 -9.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.1479 REMARK 3 T33: 0.1928 T12: -0.0119 REMARK 3 T13: -0.0209 T23: 0.0479 REMARK 3 L TENSOR REMARK 3 L11: 7.1215 L22: 5.1917 REMARK 3 L33: 2.4037 L12: 5.3058 REMARK 3 L13: -1.4594 L23: -0.6430 REMARK 3 S TENSOR REMARK 3 S11: 0.1339 S12: 0.0633 S13: 0.1153 REMARK 3 S21: 0.0575 S22: -0.0956 S23: -0.2016 REMARK 3 S31: -0.0763 S32: 0.2224 S33: -0.0443 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 31 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9968 -5.2272 -15.8210 REMARK 3 T TENSOR REMARK 3 T11: 0.2551 T22: 0.2055 REMARK 3 T33: 0.2331 T12: -0.0543 REMARK 3 T13: 0.0294 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.7872 L22: 6.6101 REMARK 3 L33: 5.9460 L12: 4.7050 REMARK 3 L13: -3.9867 L23: -5.4390 REMARK 3 S TENSOR REMARK 3 S11: -0.9995 S12: 0.6038 S13: -1.0357 REMARK 3 S21: -0.8418 S22: 0.1570 S23: -0.8711 REMARK 3 S31: 0.6682 S32: -0.0866 S33: 0.5897 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 42 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1001 -2.6843 -18.3757 REMARK 3 T TENSOR REMARK 3 T11: 0.2560 T22: 0.3932 REMARK 3 T33: 0.3390 T12: -0.0090 REMARK 3 T13: 0.0690 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 3.3303 L22: 8.9238 REMARK 3 L33: 8.7574 L12: 2.5760 REMARK 3 L13: -3.5777 L23: -4.7907 REMARK 3 S TENSOR REMARK 3 S11: -0.5445 S12: -0.0281 S13: -0.2822 REMARK 3 S21: -0.4866 S22: 0.2520 S23: -0.3353 REMARK 3 S31: 0.3074 S32: 1.1496 S33: 0.2957 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 52 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5281 -2.4657 -5.7932 REMARK 3 T TENSOR REMARK 3 T11: 0.1696 T22: 0.1812 REMARK 3 T33: 0.1823 T12: -0.0223 REMARK 3 T13: -0.0275 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 6.8724 L22: 5.3788 REMARK 3 L33: 4.0193 L12: 5.1218 REMARK 3 L13: -4.0148 L23: -2.8457 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: -0.4335 S13: 0.3967 REMARK 3 S21: 0.0843 S22: -0.1185 S23: -0.1180 REMARK 3 S31: -0.0403 S32: 0.3311 S33: 0.0540 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 72 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0427 2.2932 -20.8170 REMARK 3 T TENSOR REMARK 3 T11: 0.3159 T22: 0.2854 REMARK 3 T33: 0.2482 T12: -0.0448 REMARK 3 T13: -0.0032 T23: 0.0748 REMARK 3 L TENSOR REMARK 3 L11: 6.6190 L22: 6.7393 REMARK 3 L33: 3.7050 L12: 5.2518 REMARK 3 L13: -0.9797 L23: 0.4612 REMARK 3 S TENSOR REMARK 3 S11: -0.9781 S12: 0.9942 S13: 0.0292 REMARK 3 S21: -1.0279 S22: 0.6102 S23: -0.2646 REMARK 3 S31: -0.0292 S32: 0.0304 S33: 0.3457 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 91 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9145 10.8456 -17.4155 REMARK 3 T TENSOR REMARK 3 T11: 0.3921 T22: 0.3111 REMARK 3 T33: 0.4315 T12: -0.0866 REMARK 3 T13: -0.0831 T23: 0.1390 REMARK 3 L TENSOR REMARK 3 L11: 5.7260 L22: 5.1568 REMARK 3 L33: 6.9098 L12: 1.2758 REMARK 3 L13: 3.5982 L23: 4.8115 REMARK 3 S TENSOR REMARK 3 S11: -0.6183 S12: 0.4615 S13: 0.8509 REMARK 3 S21: -0.5520 S22: 0.5592 S23: -0.1176 REMARK 3 S31: -1.0403 S32: 0.1128 S33: 0.0934 REMARK 3 TLS GROUP : 31 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2644 -18.9707 8.2044 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: 0.2283 REMARK 3 T33: 0.2127 T12: 0.0027 REMARK 3 T13: -0.0004 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 8.9010 L22: 2.0247 REMARK 3 L33: 2.1449 L12: -0.8282 REMARK 3 L13: 3.2677 L23: -1.2059 REMARK 3 S TENSOR REMARK 3 S11: 0.4171 S12: -0.0784 S13: -0.6263 REMARK 3 S21: 0.0404 S22: -0.1574 S23: 0.4699 REMARK 3 S31: 0.3232 S32: -0.3930 S33: -0.3098 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000253734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.908 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87557 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 19.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 200 DATA REDUNDANCY : 1.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 46.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1MHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 20% (W/V) PEG 4000, 30% REMARK 280 (V/V) ETHYLENE GLYCOL, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 HIS A 282 REMARK 465 PRO D 195 REMARK 465 LYS D 196 REMARK 465 GLY D 197 REMARK 465 ARG D 275 REMARK 465 SER D 276 REMARK 465 HIS D 277 REMARK 465 HIS D 278 REMARK 465 HIS D 279 REMARK 465 HIS D 280 REMARK 465 HIS D 281 REMARK 465 HIS D 282 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS B 67 O HOH B 103 1.58 REMARK 500 HE ARG D 157 O HOH D 304 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -126.73 51.55 REMARK 500 ASN A 86 52.14 39.11 REMARK 500 GLN A 180 58.06 -97.13 REMARK 500 PRO A 210 -177.56 -68.87 REMARK 500 LYS A 219 -70.27 -92.26 REMARK 500 ASP A 220 -63.57 177.52 REMARK 500 SER B 55 -169.01 -128.94 REMARK 500 TRP B 60 -2.66 76.68 REMARK 500 ASP D 29 -122.86 50.02 REMARK 500 TYR D 123 -60.54 -120.48 REMARK 500 SER D 131 -30.69 -135.60 REMARK 500 ASP D 220 -113.83 59.09 REMARK 500 TRP E 60 -2.59 77.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 443 DISTANCE = 6.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A2002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 183 OD1 REMARK 620 2 HOH D 416 O 94.3 REMARK 620 N 1 DBREF 7LFM A 1 276 UNP Q31093 Q31093_MOUSE 25 301 DBREF 7LFM B 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 7LFM C 1 7 UNP P03888 NU1M_MOUSE 1 7 DBREF 7LFM D 1 276 UNP Q31093 Q31093_MOUSE 25 301 DBREF 7LFM E 1 99 UNP P01887 B2MG_MOUSE 21 119 DBREF 7LFM F 1 7 UNP P03888 NU1M_MOUSE 1 7 SEQADV 7LFM A UNP Q31093 GLY 299 DELETION SEQADV 7LFM HIS A 277 UNP Q31093 EXPRESSION TAG SEQADV 7LFM HIS A 278 UNP Q31093 EXPRESSION TAG SEQADV 7LFM HIS A 279 UNP Q31093 EXPRESSION TAG SEQADV 7LFM HIS A 280 UNP Q31093 EXPRESSION TAG SEQADV 7LFM HIS A 281 UNP Q31093 EXPRESSION TAG SEQADV 7LFM HIS A 282 UNP Q31093 EXPRESSION TAG SEQADV 7LFM ASP B 85 UNP P01887 ALA 105 VARIANT SEQADV 7LFM VAL C 6 UNP P03888 ILE 6 ENGINEERED MUTATION SEQADV 7LFM D UNP Q31093 GLY 299 DELETION SEQADV 7LFM HIS D 277 UNP Q31093 EXPRESSION TAG SEQADV 7LFM HIS D 278 UNP Q31093 EXPRESSION TAG SEQADV 7LFM HIS D 279 UNP Q31093 EXPRESSION TAG SEQADV 7LFM HIS D 280 UNP Q31093 EXPRESSION TAG SEQADV 7LFM HIS D 281 UNP Q31093 EXPRESSION TAG SEQADV 7LFM HIS D 282 UNP Q31093 EXPRESSION TAG SEQADV 7LFM ASP E 85 UNP P01887 ALA 105 VARIANT SEQADV 7LFM VAL F 6 UNP P03888 ILE 6 ENGINEERED MUTATION SEQRES 1 A 282 GLY SER HIS SER LEU ARG TYR PHE HIS THR ALA VAL SER SEQRES 2 A 282 ARG PRO GLY ARG GLY GLU PRO GLN TYR ILE SER VAL GLY SEQRES 3 A 282 TYR VAL ASP ASP VAL GLN PHE GLN ARG CYS ASP SER ILE SEQRES 4 A 282 GLU GLU ILE PRO ARG MET GLU PRO ARG ALA PRO TRP MET SEQRES 5 A 282 GLU LYS GLU ARG PRO GLU TYR TRP LYS GLU LEU LYS LEU SEQRES 6 A 282 LYS VAL LYS ASN ILE ALA GLN SER ALA ARG ALA ASN LEU SEQRES 7 A 282 ARG THR LEU LEU ARG TYR TYR ASN GLN SER GLU GLY GLY SEQRES 8 A 282 SER HIS ILE LEU GLN TRP MET VAL SER CYS GLU VAL GLY SEQRES 9 A 282 PRO ASP MET ARG LEU LEU GLY ALA HIS TYR GLN ALA ALA SEQRES 10 A 282 TYR ASP GLY SER ASP TYR ILE THR LEU ASN GLU ASP LEU SEQRES 11 A 282 SER SER TRP THR ALA VAL ASP MET VAL SER GLN ILE THR SEQRES 12 A 282 LYS SER ARG LEU GLU SER ALA GLY THR ALA GLU TYR PHE SEQRES 13 A 282 ARG ALA TYR VAL GLU GLY GLU CYS LEU GLU LEU LEU HIS SEQRES 14 A 282 ARG PHE LEU ARG ASN GLY LYS GLU ILE LEU GLN ARG ALA SEQRES 15 A 282 ASP PRO PRO LYS ALA HIS VAL ALA HIS HIS PRO ARG PRO SEQRES 16 A 282 LYS GLY ASP VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 282 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LYS ASP GLU SEQRES 18 A 282 GLU ASP LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 282 PRO SER GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 282 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS TYR SEQRES 21 A 282 VAL HIS HIS GLU GLY LEU THR GLU PRO LEU ALA LEU LYS SEQRES 22 A 282 TRP ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 B 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 B 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 B 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 B 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 B 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 B 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 B 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 7 FME PHE PHE ILE ASN VAL LEU SEQRES 1 D 282 GLY SER HIS SER LEU ARG TYR PHE HIS THR ALA VAL SER SEQRES 2 D 282 ARG PRO GLY ARG GLY GLU PRO GLN TYR ILE SER VAL GLY SEQRES 3 D 282 TYR VAL ASP ASP VAL GLN PHE GLN ARG CYS ASP SER ILE SEQRES 4 D 282 GLU GLU ILE PRO ARG MET GLU PRO ARG ALA PRO TRP MET SEQRES 5 D 282 GLU LYS GLU ARG PRO GLU TYR TRP LYS GLU LEU LYS LEU SEQRES 6 D 282 LYS VAL LYS ASN ILE ALA GLN SER ALA ARG ALA ASN LEU SEQRES 7 D 282 ARG THR LEU LEU ARG TYR TYR ASN GLN SER GLU GLY GLY SEQRES 8 D 282 SER HIS ILE LEU GLN TRP MET VAL SER CYS GLU VAL GLY SEQRES 9 D 282 PRO ASP MET ARG LEU LEU GLY ALA HIS TYR GLN ALA ALA SEQRES 10 D 282 TYR ASP GLY SER ASP TYR ILE THR LEU ASN GLU ASP LEU SEQRES 11 D 282 SER SER TRP THR ALA VAL ASP MET VAL SER GLN ILE THR SEQRES 12 D 282 LYS SER ARG LEU GLU SER ALA GLY THR ALA GLU TYR PHE SEQRES 13 D 282 ARG ALA TYR VAL GLU GLY GLU CYS LEU GLU LEU LEU HIS SEQRES 14 D 282 ARG PHE LEU ARG ASN GLY LYS GLU ILE LEU GLN ARG ALA SEQRES 15 D 282 ASP PRO PRO LYS ALA HIS VAL ALA HIS HIS PRO ARG PRO SEQRES 16 D 282 LYS GLY ASP VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 D 282 TYR PRO ALA ASP ILE THR LEU THR TRP GLN LYS ASP GLU SEQRES 18 D 282 GLU ASP LEU THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 D 282 PRO SER GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 D 282 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS TYR SEQRES 21 D 282 VAL HIS HIS GLU GLY LEU THR GLU PRO LEU ALA LEU LYS SEQRES 22 D 282 TRP ARG SER HIS HIS HIS HIS HIS HIS SEQRES 1 E 99 ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG HIS SEQRES 2 E 99 PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS TYR SEQRES 3 E 99 VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN MET SEQRES 4 E 99 LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SER SEQRES 5 E 99 ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE LEU SEQRES 6 E 99 ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR TYR SEQRES 7 E 99 ALA CYS ARG VAL LYS HIS ASP SER MET ALA GLU PRO LYS SEQRES 8 E 99 THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 F 7 FME PHE PHE ILE ASN VAL LEU MODRES 7LFM FME C 1 MET MODIFIED RESIDUE MODRES 7LFM FME F 1 MET MODIFIED RESIDUE HET FME C 1 20 HET FME F 1 20 HET NAG A2001 27 HET NA A2002 1 HETNAM FME N-FORMYLMETHIONINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 FME 2(C6 H11 N O3 S) FORMUL 7 NAG C8 H15 N O6 FORMUL 8 NA NA 1+ FORMUL 9 HOH *493(H2 O) HELIX 1 AA1 ALA A 49 GLU A 55 5 7 HELIX 2 AA2 ARG A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 GLY A 151 1 15 HELIX 4 AA4 THR A 152 GLU A 161 1 10 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLU A 253 TYR A 257 5 5 HELIX 8 AA8 ALA D 49 GLU D 55 5 7 HELIX 9 AA9 ARG D 56 TYR D 85 1 30 HELIX 10 AB1 ASP D 137 GLY D 151 1 15 HELIX 11 AB2 THR D 152 GLY D 162 1 11 HELIX 12 AB3 GLY D 162 GLY D 175 1 14 HELIX 13 AB4 GLY D 175 GLN D 180 1 6 HELIX 14 AB5 THR D 225 MET D 228 5 4 HELIX 15 AB6 GLU D 253 TYR D 257 5 5 SHEET 1 AA1 8 ILE A 42 PRO A 47 0 SHEET 2 AA1 8 VAL A 31 ILE A 39 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 TYR A 22 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 ILE A 94 VAL A 103 -1 O LEU A 95 N ALA A 11 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N GLU A 102 SHEET 7 AA1 8 SER A 121 LEU A 126 -1 O TYR A 123 N ALA A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N THR A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 VAL A 199 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 VAL A 249 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 VAL A 199 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 VAL A 249 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 3 THR A 214 GLN A 218 0 SHEET 2 AA4 3 THR A 258 HIS A 262 -1 O TYR A 260 N THR A 216 SHEET 3 AA4 3 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 GLN B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 AA5 4 GLU B 50 MET B 51 -1 N GLU B 50 O HIS B 67 SHEET 1 AA6 4 GLN B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O ALA B 66 N CYS B 25 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 LYS B 44 LYS B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O LYS B 44 SHEET 3 AA7 4 TYR B 78 LYS B 83 -1 O ARG B 81 N GLN B 38 SHEET 4 AA7 4 LYS B 91 TYR B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 AA8 8 ILE D 42 PRO D 47 0 SHEET 2 AA8 8 VAL D 31 ILE D 39 -1 N ILE D 39 O ILE D 42 SHEET 3 AA8 8 TYR D 22 VAL D 28 -1 N GLY D 26 O PHE D 33 SHEET 4 AA8 8 HIS D 3 VAL D 12 -1 N ARG D 6 O TYR D 27 SHEET 5 AA8 8 ILE D 94 VAL D 103 -1 O LEU D 95 N ALA D 11 SHEET 6 AA8 8 LEU D 109 TYR D 118 -1 O LEU D 110 N GLU D 102 SHEET 7 AA8 8 SER D 121 LEU D 126 -1 O LEU D 126 N TYR D 114 SHEET 8 AA8 8 TRP D 133 ALA D 135 -1 O THR D 134 N THR D 125 SHEET 1 AA9 4 LYS D 186 HIS D 192 0 SHEET 2 AA9 4 VAL D 199 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AA9 4 PHE D 241 VAL D 249 -1 O ALA D 245 N CYS D 203 SHEET 4 AA9 4 GLU D 229 LEU D 230 -1 N GLU D 229 O ALA D 246 SHEET 1 AB1 4 LYS D 186 HIS D 192 0 SHEET 2 AB1 4 VAL D 199 PHE D 208 -1 O TRP D 204 N HIS D 188 SHEET 3 AB1 4 PHE D 241 VAL D 249 -1 O ALA D 245 N CYS D 203 SHEET 4 AB1 4 ARG D 234 PRO D 235 -1 N ARG D 234 O GLN D 242 SHEET 1 AB2 4 GLU D 222 ASP D 223 0 SHEET 2 AB2 4 THR D 214 LYS D 219 -1 N LYS D 219 O GLU D 222 SHEET 3 AB2 4 THR D 258 HIS D 262 -1 O TYR D 260 N THR D 216 SHEET 4 AB2 4 LEU D 270 LEU D 272 -1 O LEU D 272 N CYS D 259 SHEET 1 AB3 4 GLN E 6 SER E 11 0 SHEET 2 AB3 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AB3 4 PHE E 62 PHE E 70 -1 O THR E 68 N LEU E 23 SHEET 4 AB3 4 GLU E 50 MET E 51 -1 N GLU E 50 O HIS E 67 SHEET 1 AB4 4 GLN E 6 SER E 11 0 SHEET 2 AB4 4 ASN E 21 PHE E 30 -1 O ASN E 24 N TYR E 10 SHEET 3 AB4 4 PHE E 62 PHE E 70 -1 O THR E 68 N LEU E 23 SHEET 4 AB4 4 SER E 55 PHE E 56 -1 N SER E 55 O TYR E 63 SHEET 1 AB5 4 LYS E 44 LYS E 45 0 SHEET 2 AB5 4 GLU E 36 LYS E 41 -1 N LYS E 41 O LYS E 44 SHEET 3 AB5 4 TYR E 78 LYS E 83 -1 O ARG E 81 N GLN E 38 SHEET 4 AB5 4 LYS E 91 TYR E 94 -1 O VAL E 93 N CYS E 80 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.04 SSBOND 4 CYS D 101 CYS D 164 1555 1555 2.07 SSBOND 5 CYS D 203 CYS D 259 1555 1555 2.05 SSBOND 6 CYS E 25 CYS E 80 1555 1555 2.03 LINK ND2 ASN A 86 C1 NAG A2001 1555 1555 1.43 LINK C FME C 1 N PHE C 2 1555 1555 1.34 LINK C FME F 1 N PHE F 2 1555 1555 1.33 LINK OD1 ASP A 183 NA NA A2002 1555 1555 2.04 LINK NA NA A2002 O HOH D 416 1555 1655 2.28 CISPEP 1 TYR A 209 PRO A 210 0 -5.58 CISPEP 2 HIS B 31 PRO B 32 0 5.33 CISPEP 3 TYR D 209 PRO D 210 0 2.91 CISPEP 4 HIS E 31 PRO E 32 0 2.85 CRYST1 63.743 65.019 54.584 98.55 98.22 112.36 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015688 0.006452 0.003792 0.00000 SCALE2 0.000000 0.016630 0.003782 0.00000 SCALE3 0.000000 0.000000 0.018983 0.00000