HEADER VIRUS LIKE PARTICLE 20-JAN-21 7LGE TITLE ASYMMETRIC UNIT FOR PHAGE QBETA T=4 PARTICLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSID PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CP,COAT PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE QBETA; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE Q-BETA; SOURCE 4 ORGANISM_TAXID: 39803 KEYWDS BACTERIOPHAGE, VIRUS, QBETA, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR J.Y.CHANG,J.ZHANG REVDAT 2 09-MAR-22 7LGE 1 JRNL REMARK REVDAT 1 26-JAN-22 7LGE 0 JRNL AUTH J.Y.CHANG,K.V.GORZELNIK,J.THONGCHOL,J.ZHANG JRNL TITL STRUCTURAL ASSEMBLY OF Q BETA VIRION AND ITS DIVERSE FORMS JRNL TITL 2 OF VIRUS-LIKE PARTICLES. JRNL REF VIRUSES V. 14 2022 JRNL REFN ESSN 1999-4915 JRNL PMID 35215818 JRNL DOI 10.3390/V14020225 REMARK 2 REMARK 2 RESOLUTION. 5.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 5.600 REMARK 3 NUMBER OF PARTICLES : 1138 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7LGE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000254255. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ESCHERICHIA VIRUS QBETA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : JEOL 3200FSC; FEI TECNAI F20 REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K); REMARK 245 GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD; BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3000.00; 3000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM; FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN; FIELD REMARK 245 EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300; 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 -0.500000 389.12000 REMARK 350 BIOMT2 2 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 2 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.500000 -0.309017 509.36469 REMARK 350 BIOMT2 3 0.500000 -0.309017 -0.809017 314.80469 REMARK 350 BIOMT3 3 0.309017 -0.809017 0.500000 194.56000 REMARK 350 BIOMT1 4 -0.809017 0.500000 0.309017 194.56000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 509.36469 REMARK 350 BIOMT3 4 -0.309017 -0.809017 0.500000 314.80469 REMARK 350 BIOMT1 5 0.309017 0.809017 0.500000 -120.24469 REMARK 350 BIOMT2 5 -0.809017 0.500000 -0.309017 314.80469 REMARK 350 BIOMT3 5 -0.500000 -0.309017 0.809017 194.56000 REMARK 350 BIOMT1 6 -0.500000 0.309017 -0.809017 389.12000 REMARK 350 BIOMT2 6 0.309017 -0.809017 -0.500000 389.12000 REMARK 350 BIOMT3 6 -0.809017 -0.500000 0.309017 389.12000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 194.56000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 509.36469 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 74.31531 REMARK 350 BIOMT1 8 0.309017 0.809017 -0.500000 74.31531 REMARK 350 BIOMT2 8 -0.809017 0.500000 0.309017 194.56000 REMARK 350 BIOMT3 8 0.500000 0.309017 0.809017 -120.24469 REMARK 350 BIOMT1 9 0.500000 0.309017 -0.809017 194.56000 REMARK 350 BIOMT2 9 0.309017 0.809017 0.500000 -120.24469 REMARK 350 BIOMT3 9 0.809017 -0.500000 0.309017 74.31531 REMARK 350 BIOMT1 10 0.000000 0.000000 -1.000000 389.12000 REMARK 350 BIOMT2 10 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 -1.000000 0.000000 389.12000 REMARK 350 BIOMT1 11 0.309017 -0.809017 0.500000 194.56000 REMARK 350 BIOMT2 11 -0.809017 -0.500000 -0.309017 509.36469 REMARK 350 BIOMT3 11 0.500000 -0.309017 -0.809017 314.80469 REMARK 350 BIOMT1 12 -0.309017 -0.809017 0.500000 314.80469 REMARK 350 BIOMT2 12 -0.809017 0.500000 0.309017 194.56000 REMARK 350 BIOMT3 12 -0.500000 -0.309017 -0.809017 509.36469 REMARK 350 BIOMT1 13 -0.500000 -0.309017 0.809017 194.56000 REMARK 350 BIOMT2 13 0.309017 0.809017 0.500000 -120.24469 REMARK 350 BIOMT3 13 -0.809017 0.500000 -0.309017 314.80469 REMARK 350 BIOMT1 14 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 14 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 14 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 15 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 15 0.309017 -0.809017 -0.500000 389.12000 REMARK 350 BIOMT3 15 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 16 -0.809017 0.500000 0.309017 194.56000 REMARK 350 BIOMT2 16 0.500000 0.309017 0.809017 -120.24469 REMARK 350 BIOMT3 16 0.309017 0.809017 -0.500000 74.31531 REMARK 350 BIOMT1 17 0.309017 0.809017 0.500000 -120.24469 REMARK 350 BIOMT2 17 0.809017 -0.500000 0.309017 74.31531 REMARK 350 BIOMT3 17 0.500000 0.309017 -0.809017 194.56000 REMARK 350 BIOMT1 18 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 18 0.000000 -1.000000 0.000000 389.12000 REMARK 350 BIOMT3 18 0.000000 0.000000 -1.000000 389.12000 REMARK 350 BIOMT1 19 0.309017 -0.809017 -0.500000 389.12000 REMARK 350 BIOMT2 19 -0.809017 -0.500000 0.309017 389.12000 REMARK 350 BIOMT3 19 -0.500000 0.309017 -0.809017 389.12000 REMARK 350 BIOMT1 20 -0.809017 -0.500000 -0.309017 509.36469 REMARK 350 BIOMT2 20 -0.500000 0.309017 0.809017 74.31531 REMARK 350 BIOMT3 20 -0.309017 0.809017 -0.500000 194.56000 REMARK 350 BIOMT1 21 -0.500000 -0.309017 -0.809017 509.36469 REMARK 350 BIOMT2 21 0.309017 0.809017 -0.500000 74.31531 REMARK 350 BIOMT3 21 0.809017 -0.500000 -0.309017 194.56000 REMARK 350 BIOMT1 22 -0.809017 0.500000 -0.309017 314.80469 REMARK 350 BIOMT2 22 0.500000 0.309017 -0.809017 194.56000 REMARK 350 BIOMT3 22 -0.309017 -0.809017 -0.500000 509.36469 REMARK 350 BIOMT1 23 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 23 0.000000 0.000000 -1.000000 389.12000 REMARK 350 BIOMT3 23 -1.000000 0.000000 0.000000 389.12000 REMARK 350 BIOMT1 24 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 24 -0.500000 0.309017 -0.809017 389.12000 REMARK 350 BIOMT3 24 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 25 0.500000 -0.309017 -0.809017 314.80469 REMARK 350 BIOMT2 25 -0.309017 0.809017 -0.500000 194.56000 REMARK 350 BIOMT3 25 0.809017 0.500000 0.309017 -120.24469 REMARK 350 BIOMT1 26 0.809017 0.500000 0.309017 -120.24469 REMARK 350 BIOMT2 26 0.500000 -0.309017 -0.809017 314.80469 REMARK 350 BIOMT3 26 -0.309017 0.809017 -0.500000 194.56000 REMARK 350 BIOMT1 27 0.809017 -0.500000 -0.309017 194.56000 REMARK 350 BIOMT2 27 -0.500000 -0.309017 -0.809017 509.36469 REMARK 350 BIOMT3 27 0.309017 0.809017 -0.500000 74.31531 REMARK 350 BIOMT1 28 -0.309017 -0.809017 -0.500000 509.36469 REMARK 350 BIOMT2 28 -0.809017 0.500000 -0.309017 314.80469 REMARK 350 BIOMT3 28 0.500000 0.309017 -0.809017 194.56000 REMARK 350 BIOMT1 29 -1.000000 0.000000 0.000000 389.12000 REMARK 350 BIOMT2 29 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 29 0.000000 0.000000 -1.000000 389.12000 REMARK 350 BIOMT1 30 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 30 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 389.12000 REMARK 350 BIOMT1 31 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 31 -0.809017 -0.500000 0.309017 389.12000 REMARK 350 BIOMT3 31 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 32 0.809017 0.500000 0.309017 -120.24469 REMARK 350 BIOMT2 32 -0.500000 0.309017 0.809017 74.31531 REMARK 350 BIOMT3 32 0.309017 -0.809017 0.500000 194.56000 REMARK 350 BIOMT1 33 0.809017 -0.500000 -0.309017 194.56000 REMARK 350 BIOMT2 33 0.500000 0.309017 0.809017 -120.24469 REMARK 350 BIOMT3 33 -0.309017 -0.809017 0.500000 314.80469 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 509.36469 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 74.31531 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 194.56000 REMARK 350 BIOMT1 35 -1.000000 0.000000 0.000000 389.12000 REMARK 350 BIOMT2 35 0.000000 -1.000000 0.000000 389.12000 REMARK 350 BIOMT3 35 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 36 0.000000 -1.000000 0.000000 389.12000 REMARK 350 BIOMT2 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 36 -1.000000 0.000000 0.000000 389.12000 REMARK 350 BIOMT1 37 -0.809017 -0.500000 0.309017 389.12000 REMARK 350 BIOMT2 37 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 37 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 38 -0.500000 0.309017 0.809017 74.31531 REMARK 350 BIOMT2 38 0.309017 -0.809017 0.500000 194.56000 REMARK 350 BIOMT3 38 0.809017 0.500000 0.309017 -120.24469 REMARK 350 BIOMT1 39 0.500000 0.309017 0.809017 -120.24469 REMARK 350 BIOMT2 39 -0.309017 -0.809017 0.500000 314.80469 REMARK 350 BIOMT3 39 0.809017 -0.500000 -0.309017 194.56000 REMARK 350 BIOMT1 40 0.809017 -0.500000 0.309017 74.31531 REMARK 350 BIOMT2 40 -0.500000 -0.309017 0.809017 194.56000 REMARK 350 BIOMT3 40 -0.309017 -0.809017 -0.500000 509.36469 REMARK 350 BIOMT1 41 -0.500000 0.309017 0.809017 74.31531 REMARK 350 BIOMT2 41 -0.309017 0.809017 -0.500000 194.56000 REMARK 350 BIOMT3 41 -0.809017 -0.500000 -0.309017 509.36469 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 -120.24469 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 74.31531 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 194.56000 REMARK 350 BIOMT1 43 0.809017 -0.500000 0.309017 74.31531 REMARK 350 BIOMT2 43 0.500000 0.309017 -0.809017 194.56000 REMARK 350 BIOMT3 43 0.309017 0.809017 0.500000 -120.24469 REMARK 350 BIOMT1 44 0.000000 -1.000000 0.000000 389.12000 REMARK 350 BIOMT2 44 0.000000 0.000000 -1.000000 389.12000 REMARK 350 BIOMT3 44 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 45 -0.809017 -0.500000 0.309017 389.12000 REMARK 350 BIOMT2 45 -0.500000 0.309017 -0.809017 389.12000 REMARK 350 BIOMT3 45 0.309017 -0.809017 -0.500000 389.12000 REMARK 350 BIOMT1 46 -0.309017 -0.809017 0.500000 314.80469 REMARK 350 BIOMT2 46 0.809017 -0.500000 -0.309017 194.56000 REMARK 350 BIOMT3 46 0.500000 0.309017 0.809017 -120.24469 REMARK 350 BIOMT1 47 -0.500000 -0.309017 0.809017 194.56000 REMARK 350 BIOMT2 47 -0.309017 -0.809017 -0.500000 509.36469 REMARK 350 BIOMT3 47 0.809017 -0.500000 0.309017 74.31531 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 48 -1.000000 0.000000 0.000000 389.12000 REMARK 350 BIOMT3 48 0.000000 -1.000000 0.000000 389.12000 REMARK 350 BIOMT1 49 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 49 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 -0.809017 -0.500000 0.309017 389.12000 REMARK 350 BIOMT1 50 0.309017 -0.809017 0.500000 194.56000 REMARK 350 BIOMT2 50 0.809017 0.500000 0.309017 -120.24469 REMARK 350 BIOMT3 50 -0.500000 0.309017 0.809017 74.31531 REMARK 350 BIOMT1 51 0.000000 0.000000 -1.000000 389.12000 REMARK 350 BIOMT2 51 -1.000000 0.000000 0.000000 389.12000 REMARK 350 BIOMT3 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.500000 0.309017 -0.809017 389.12000 REMARK 350 BIOMT2 52 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 52 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 53 -0.309017 0.809017 -0.500000 194.56000 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 -120.24469 REMARK 350 BIOMT3 53 0.500000 -0.309017 -0.809017 314.80469 REMARK 350 BIOMT1 54 0.309017 0.809017 -0.500000 74.31531 REMARK 350 BIOMT2 54 0.809017 -0.500000 -0.309017 194.56000 REMARK 350 BIOMT3 54 -0.500000 -0.309017 -0.809017 509.36469 REMARK 350 BIOMT1 55 0.500000 0.309017 -0.809017 194.56000 REMARK 350 BIOMT2 55 -0.309017 -0.809017 -0.500000 509.36469 REMARK 350 BIOMT3 55 -0.809017 0.500000 -0.309017 314.80469 REMARK 350 BIOMT1 56 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 56 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 56 0.309017 -0.809017 -0.500000 389.12000 REMARK 350 BIOMT1 57 0.500000 -0.309017 -0.809017 314.80469 REMARK 350 BIOMT2 57 0.309017 -0.809017 0.500000 194.56000 REMARK 350 BIOMT3 57 -0.809017 -0.500000 -0.309017 509.36469 REMARK 350 BIOMT1 58 -0.500000 -0.309017 -0.809017 509.36469 REMARK 350 BIOMT2 58 -0.309017 -0.809017 0.500000 314.80469 REMARK 350 BIOMT3 58 -0.809017 0.500000 0.309017 194.56000 REMARK 350 BIOMT1 59 -0.809017 0.500000 -0.309017 314.80469 REMARK 350 BIOMT2 59 -0.500000 -0.309017 0.809017 194.56000 REMARK 350 BIOMT3 59 0.309017 0.809017 0.500000 -120.24469 REMARK 350 BIOMT1 60 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 60 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 60 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 465 MET C 0 REMARK 465 MET D 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 23 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG A 47 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 SER A 95 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 TYR B 62 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG C 105 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 24 60.53 -114.49 REMARK 500 ARG A 59 -33.45 -136.61 REMARK 500 THR A 75 81.11 90.60 REMARK 500 SER A 95 49.08 100.99 REMARK 500 ALA B 38 -126.18 55.69 REMARK 500 SER B 79 -160.38 -101.50 REMARK 500 CYS B 80 -133.86 -112.08 REMARK 500 SER C 56 -130.71 -108.04 REMARK 500 ASN C 58 -37.80 108.20 REMARK 500 ARG C 59 -39.50 -132.76 REMARK 500 GLN C 69 -56.85 -155.45 REMARK 500 ASP C 81 132.79 85.14 REMARK 500 GLU D 45 -61.81 -93.57 REMARK 500 ARG D 59 -56.70 -120.53 REMARK 500 THR D 101 -133.22 -134.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 24 GLY A 25 149.16 REMARK 500 GLY B 9 ASN B 10 -149.80 REMARK 500 PRO C 82 SER C 83 -135.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 24 23.56 REMARK 500 CYS A 74 21.69 REMARK 500 LYS B 2 -23.36 REMARK 500 GLY B 9 -23.88 REMARK 500 SER B 36 21.99 REMARK 500 THR B 85 25.47 REMARK 500 PRO C 82 -21.49 REMARK 500 GLU D 45 -23.02 REMARK 500 ARG D 59 -23.13 REMARK 500 GLN D 127 -23.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-23321 RELATED DB: EMDB REMARK 900 ASYMMETRIC UNIT FOR PHAGE QBETA T=4 PARTICLE DBREF 7LGE A 0 132 UNP P03615 CAPSD_BPQBE 1 133 DBREF 7LGE B 0 132 UNP P03615 CAPSD_BPQBE 1 133 DBREF 7LGE C 0 132 UNP P03615 CAPSD_BPQBE 1 133 DBREF 7LGE D 0 132 UNP P03615 CAPSD_BPQBE 1 133 SEQRES 1 A 133 MET ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY SEQRES 2 A 133 LYS ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY SEQRES 3 A 133 VAL ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN ALA SEQRES 4 A 133 GLY ALA VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER SEQRES 5 A 133 VAL SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL SEQRES 6 A 133 GLN VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN SEQRES 7 A 133 GLY SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA SEQRES 8 A 133 ASP VAL THR PHE SER PHE THR GLN TYR SER THR ASP GLU SEQRES 9 A 133 GLU ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU SEQRES 10 A 133 ALA SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN SEQRES 11 A 133 PRO ALA TYR SEQRES 1 B 133 MET ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY SEQRES 2 B 133 LYS ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY SEQRES 3 B 133 VAL ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN ALA SEQRES 4 B 133 GLY ALA VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER SEQRES 5 B 133 VAL SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL SEQRES 6 B 133 GLN VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN SEQRES 7 B 133 GLY SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA SEQRES 8 B 133 ASP VAL THR PHE SER PHE THR GLN TYR SER THR ASP GLU SEQRES 9 B 133 GLU ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU SEQRES 10 B 133 ALA SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN SEQRES 11 B 133 PRO ALA TYR SEQRES 1 C 133 MET ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY SEQRES 2 C 133 LYS ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY SEQRES 3 C 133 VAL ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN ALA SEQRES 4 C 133 GLY ALA VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER SEQRES 5 C 133 VAL SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL SEQRES 6 C 133 GLN VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN SEQRES 7 C 133 GLY SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA SEQRES 8 C 133 ASP VAL THR PHE SER PHE THR GLN TYR SER THR ASP GLU SEQRES 9 C 133 GLU ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU SEQRES 10 C 133 ALA SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN SEQRES 11 C 133 PRO ALA TYR SEQRES 1 D 133 MET ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY SEQRES 2 D 133 LYS ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY SEQRES 3 D 133 VAL ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN ALA SEQRES 4 D 133 GLY ALA VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER SEQRES 5 D 133 VAL SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL SEQRES 6 D 133 GLN VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN SEQRES 7 D 133 GLY SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA SEQRES 8 D 133 ASP VAL THR PHE SER PHE THR GLN TYR SER THR ASP GLU SEQRES 9 D 133 GLU ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU SEQRES 10 D 133 ALA SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN SEQRES 11 D 133 PRO ALA TYR HELIX 1 AA1 VAL A 41 GLU A 45 5 5 HELIX 2 AA2 THR A 101 LEU A 116 1 16 HELIX 3 AA3 SER A 118 GLN A 127 1 10 HELIX 4 AA4 VAL B 41 GLU B 45 5 5 HELIX 5 AA5 THR B 101 ALA B 117 1 17 HELIX 6 AA6 SER B 118 GLN B 127 1 10 HELIX 7 AA7 VAL C 41 GLU C 45 5 5 HELIX 8 AA8 THR C 101 SER C 118 1 18 HELIX 9 AA9 SER C 118 LEU C 128 1 11 HELIX 10 AB1 THR D 101 ALA D 117 1 17 HELIX 11 AB2 SER D 118 GLN D 127 1 10 SHEET 1 AA1 6 VAL A 6 ILE A 11 0 SHEET 2 AA1 6 GLN A 17 ASN A 27 -1 O LEU A 19 N LEU A 8 SHEET 3 AA1 6 VAL A 32 GLN A 37 -1 O VAL A 32 N ASN A 27 SHEET 4 AA1 6 ARG A 47 VAL A 52 -1 O VAL A 50 N ALA A 33 SHEET 5 AA1 6 ASN A 61 ALA A 73 -1 O GLN A 69 N ARG A 47 SHEET 6 AA1 6 VAL A 84 THR A 97 -1 O ARG A 86 N THR A 72 SHEET 1 AA2 6 VAL B 6 ILE B 11 0 SHEET 2 AA2 6 GLN B 17 ASN B 27 -1 O LEU B 19 N LEU B 8 SHEET 3 AA2 6 VAL B 32 SER B 36 -1 O SER B 36 N ASN B 22 SHEET 4 AA2 6 ARG B 47 SER B 53 -1 O VAL B 50 N ALA B 33 SHEET 5 AA2 6 TYR B 62 CYS B 74 -1 O LYS B 67 N THR B 49 SHEET 6 AA2 6 SER B 83 PHE B 96 -1 O ALA B 88 N ASN B 70 SHEET 1 AA312 VAL C 6 ILE C 11 0 SHEET 2 AA312 GLN C 17 ASN C 27 -1 O GLN C 17 N ILE C 11 SHEET 3 AA312 ASN C 30 SER C 36 -1 O SER C 36 N ASN C 22 SHEET 4 AA312 VAL C 48 SER C 53 -1 O VAL C 50 N ALA C 33 SHEET 5 AA312 ASN C 61 ALA C 73 -1 O LYS C 63 N SER C 53 SHEET 6 AA312 VAL C 84 THR C 97 -1 O ALA C 90 N ILE C 68 SHEET 7 AA312 TYR D 89 THR D 97 -1 O SER D 95 N TYR C 89 SHEET 8 AA312 ASN D 61 GLN D 69 -1 N TYR D 62 O PHE D 96 SHEET 9 AA312 ARG D 47 SER D 53 -1 N ARG D 47 O GLN D 69 SHEET 10 AA312 ALA D 33 GLN D 37 -1 N ALA D 33 O VAL D 50 SHEET 11 AA312 GLN D 17 VAL D 26 -1 N ASN D 22 O SER D 36 SHEET 12 AA312 VAL D 6 ILE D 11 -1 N LEU D 8 O LEU D 19 SHEET 1 AA4 2 THR D 72 CYS D 74 0 SHEET 2 AA4 2 SER D 83 ARG D 86 -1 O SER D 83 N CYS D 74 SSBOND 1 CYS A 80 CYS D 74 1555 1555 2.05 CISPEP 1 PHE A 94 SER A 95 0 13.09 CISPEP 2 ILE C 68 GLN C 69 0 -9.51 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000