HEADER RNA BINDING PROTEIN 20-JAN-21 7LGO TITLE CRYSTAL STRUCTURE OF THE NUCLEIC ACID BINDING DOMAIN (NAB) OF NSP3 TITLE 2 FROM SARS-COV-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: NUCLEIC ACID BINDING DOMAIN (NAB); COMPND 5 SYNONYM: NSP3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS VIRAL PROTEIN, SARS-COV-2, NON-STRUCTURAL PROTEIN, NSP3, NUCLEIC ACID KEYWDS 2 BINDING DOMAIN, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS KEYWDS 3 INFECTIOUS DISEASES, CSGID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 4 INFECTIOUS DISEASES, NIAID, CENTER FOR STRUCTURAL GENOMICS OF KEYWDS 5 INFECTIOUS DISEASES, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,T.SKARINA,R.DI LEO,A.SAVCHENKO,A.JOACHIMIAK, AUTHOR 2 K.J.F.SATCHELL,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 2 18-OCT-23 7LGO 1 REMARK REVDAT 1 27-JAN-21 7LGO 0 JRNL AUTH P.J.STOGIOS JRNL TITL CRYSTAL STRUCTURE OF THE NUCLEIC ACID BINDING DOMAIN (NAB) JRNL TITL 2 OF NSP3 FROM SARS-COV-2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15_3448 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.7 REMARK 3 NUMBER OF REFLECTIONS : 12684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9100 - 4.6700 1.00 3373 183 0.2304 0.2716 REMARK 3 2 4.6700 - 3.7100 1.00 3365 178 0.2154 0.2921 REMARK 3 3 3.7100 - 3.2400 1.00 3359 178 0.2635 0.3407 REMARK 3 4 3.2400 - 2.9400 0.96 3209 171 0.3071 0.3389 REMARK 3 5 2.9400 - 2.7300 0.79 2677 140 0.3388 0.3966 REMARK 3 6 2.7300 - 2.5700 0.61 2054 99 0.3525 0.3956 REMARK 3 7 2.5700 - 2.4400 0.38 1262 73 0.3598 0.4179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.341 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1872 REMARK 3 ANGLE : 0.838 2553 REMARK 3 CHIRALITY : 0.066 273 REMARK 3 PLANARITY : 0.007 326 REMARK 3 DIHEDRAL : 16.110 680 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5915 -15.4985 6.1674 REMARK 3 T TENSOR REMARK 3 T11: 1.0144 T22: 0.3725 REMARK 3 T33: 0.4982 T12: -0.3181 REMARK 3 T13: 0.0145 T23: 0.0875 REMARK 3 L TENSOR REMARK 3 L11: 3.8631 L22: 0.2452 REMARK 3 L33: 0.0051 L12: -0.9726 REMARK 3 L13: -0.1473 L23: 0.0369 REMARK 3 S TENSOR REMARK 3 S11: -0.1037 S12: -0.5021 S13: -1.3391 REMARK 3 S21: -0.0226 S22: 0.0123 S23: -0.0017 REMARK 3 S31: 1.2045 S32: -0.2404 S33: 0.0817 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8350 9.2986 8.4462 REMARK 3 T TENSOR REMARK 3 T11: 0.4908 T22: 0.1928 REMARK 3 T33: 0.3177 T12: 0.2573 REMARK 3 T13: 0.0752 T23: 0.0381 REMARK 3 L TENSOR REMARK 3 L11: 1.9614 L22: 2.2483 REMARK 3 L33: 1.7420 L12: 1.7301 REMARK 3 L13: -0.0388 L23: -1.1540 REMARK 3 S TENSOR REMARK 3 S11: 0.1604 S12: -0.2082 S13: 0.9853 REMARK 3 S21: 0.5372 S22: -0.0218 S23: 0.6715 REMARK 3 S31: -1.0863 S32: -0.8625 S33: -0.3480 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3349 -0.7202 23.1999 REMARK 3 T TENSOR REMARK 3 T11: 0.4923 T22: 0.5608 REMARK 3 T33: 0.2593 T12: -0.3525 REMARK 3 T13: 0.1356 T23: -0.2185 REMARK 3 L TENSOR REMARK 3 L11: 0.3707 L22: 0.2166 REMARK 3 L33: 1.0255 L12: 0.1895 REMARK 3 L13: 0.3048 L23: -0.1491 REMARK 3 S TENSOR REMARK 3 S11: 0.0680 S12: -0.3422 S13: 0.0557 REMARK 3 S21: 0.2705 S22: -0.2842 S23: 0.2246 REMARK 3 S31: 0.3009 S32: -0.5815 S33: 0.1619 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0370 9.2343 20.3952 REMARK 3 T TENSOR REMARK 3 T11: 0.4956 T22: 1.4923 REMARK 3 T33: 0.4349 T12: 0.1190 REMARK 3 T13: 0.0973 T23: -0.2009 REMARK 3 L TENSOR REMARK 3 L11: 1.9347 L22: 0.1431 REMARK 3 L33: 0.7059 L12: -0.4480 REMARK 3 L13: -1.1690 L23: 0.2738 REMARK 3 S TENSOR REMARK 3 S11: -0.2333 S12: -0.1605 S13: 0.0943 REMARK 3 S21: 0.2750 S22: 0.2458 S23: 0.0896 REMARK 3 S31: 0.1664 S32: -0.1828 S33: -0.0373 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8084 -6.8236 11.7286 REMARK 3 T TENSOR REMARK 3 T11: 0.5350 T22: 0.2143 REMARK 3 T33: 0.2474 T12: -0.5077 REMARK 3 T13: -0.0201 T23: 0.0981 REMARK 3 L TENSOR REMARK 3 L11: 1.1841 L22: 2.1580 REMARK 3 L33: 0.6609 L12: 0.9309 REMARK 3 L13: -0.8073 L23: -0.8165 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: -0.1427 S13: -0.1521 REMARK 3 S21: 0.1114 S22: -0.0573 S23: 0.0354 REMARK 3 S31: 0.6163 S32: -0.5470 S33: -0.0132 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4931 -2.0423 14.8703 REMARK 3 T TENSOR REMARK 3 T11: 0.3606 T22: -0.0420 REMARK 3 T33: 0.1980 T12: -0.4996 REMARK 3 T13: -0.0584 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.4501 L22: 3.0454 REMARK 3 L33: 0.5042 L12: 1.1276 REMARK 3 L13: -0.3827 L23: -0.4546 REMARK 3 S TENSOR REMARK 3 S11: 0.1238 S12: -0.0956 S13: -0.2084 REMARK 3 S21: 0.1052 S22: -0.0562 S23: -0.0445 REMARK 3 S31: 0.4285 S32: -0.2860 S33: -0.0990 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2332 10.3307 6.7435 REMARK 3 T TENSOR REMARK 3 T11: 0.9191 T22: 1.1681 REMARK 3 T33: 1.3531 T12: 0.6215 REMARK 3 T13: 0.1419 T23: -0.1976 REMARK 3 L TENSOR REMARK 3 L11: 6.6015 L22: 1.9991 REMARK 3 L33: 5.6281 L12: -0.2922 REMARK 3 L13: 1.6667 L23: -6.8957 REMARK 3 S TENSOR REMARK 3 S11: 1.6405 S12: 2.5041 S13: 1.3599 REMARK 3 S21: -1.6713 S22: -1.7733 S23: 3.8213 REMARK 3 S31: -1.5090 S32: -2.4031 S33: 0.1677 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.0283 -20.0085 22.1054 REMARK 3 T TENSOR REMARK 3 T11: 1.6206 T22: 1.1652 REMARK 3 T33: 1.0110 T12: -0.6804 REMARK 3 T13: 0.1818 T23: 0.3000 REMARK 3 L TENSOR REMARK 3 L11: 2.4708 L22: 0.2446 REMARK 3 L33: 1.3052 L12: -0.7780 REMARK 3 L13: -1.7964 L23: 0.5647 REMARK 3 S TENSOR REMARK 3 S11: 0.4977 S12: 0.6595 S13: 1.1128 REMARK 3 S21: -0.2958 S22: 0.9028 S23: 1.1660 REMARK 3 S31: -0.3531 S32: -1.1115 S33: -1.4185 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6213 -35.2346 35.1902 REMARK 3 T TENSOR REMARK 3 T11: 1.4871 T22: 0.7109 REMARK 3 T33: 1.0783 T12: -0.5555 REMARK 3 T13: -0.3679 T23: 0.2430 REMARK 3 L TENSOR REMARK 3 L11: 3.3275 L22: 2.5055 REMARK 3 L33: 1.7539 L12: 2.5470 REMARK 3 L13: -2.3591 L23: -2.0217 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: -0.8025 S13: -1.9113 REMARK 3 S21: 0.8685 S22: -0.5944 S23: -0.9333 REMARK 3 S31: -0.0155 S32: 0.3642 S33: 0.4486 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6384 -22.2671 25.0832 REMARK 3 T TENSOR REMARK 3 T11: 1.1509 T22: 0.4902 REMARK 3 T33: 0.7448 T12: -0.4207 REMARK 3 T13: -0.1896 T23: 0.1885 REMARK 3 L TENSOR REMARK 3 L11: 2.1698 L22: 4.9404 REMARK 3 L33: 0.4518 L12: -1.8633 REMARK 3 L13: 0.8888 L23: -0.2222 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: -0.2208 S13: -0.3318 REMARK 3 S21: 0.3350 S22: -0.0522 S23: 0.2300 REMARK 3 S31: 0.0095 S32: 0.0364 S33: -0.0388 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.5711 -25.0331 31.8820 REMARK 3 T TENSOR REMARK 3 T11: 1.1305 T22: 0.4938 REMARK 3 T33: 0.7810 T12: -0.5504 REMARK 3 T13: -0.2631 T23: 0.1022 REMARK 3 L TENSOR REMARK 3 L11: 3.4934 L22: 2.8790 REMARK 3 L33: 0.6469 L12: 1.5763 REMARK 3 L13: -1.3147 L23: -1.0415 REMARK 3 S TENSOR REMARK 3 S11: 0.2820 S12: -0.4552 S13: -1.0883 REMARK 3 S21: 1.0445 S22: -0.2783 S23: -0.6281 REMARK 3 S31: 0.5675 S32: -0.0066 S33: 0.1000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.2172 -21.0177 27.5538 REMARK 3 T TENSOR REMARK 3 T11: 1.3144 T22: 0.3446 REMARK 3 T33: 0.3785 T12: -1.2004 REMARK 3 T13: 0.0000 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.2477 L22: 0.4576 REMARK 3 L33: 0.1655 L12: 0.1468 REMARK 3 L13: -0.0116 L23: 0.0856 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: -0.1340 S13: -0.0964 REMARK 3 S21: 0.1260 S22: -0.0492 S23: 0.0265 REMARK 3 S31: 0.0898 S32: -0.1194 S33: 0.0042 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7159 -27.8469 36.4272 REMARK 3 T TENSOR REMARK 3 T11: 1.4467 T22: 0.7669 REMARK 3 T33: 0.6142 T12: -0.6706 REMARK 3 T13: -0.1526 T23: 0.2082 REMARK 3 L TENSOR REMARK 3 L11: 3.1684 L22: 3.8683 REMARK 3 L33: 2.6553 L12: 2.4675 REMARK 3 L13: -2.2452 L23: -2.9432 REMARK 3 S TENSOR REMARK 3 S11: -0.2063 S12: -0.0698 S13: -0.5001 REMARK 3 S21: -0.0381 S22: -0.0107 S23: -0.0911 REMARK 3 S31: 0.3626 S32: -0.0333 S33: 0.1956 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LGO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000254270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13937 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 1.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2K87 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 2% HEXANEDIOL. REMARK 280 CRYOPROTECTANT PARATONE., PH 7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 136.09733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.04867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 102.07300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.02433 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 170.12167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 136.09733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 68.04867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.02433 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 102.07300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 170.12167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 279 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 241 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 244 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 114 REMARK 465 THR A 115 REMARK 465 PHE B 1 REMARK 465 LYS B 111 REMARK 465 PRO B 112 REMARK 465 VAL B 113 REMARK 465 GLU B 114 REMARK 465 THR B 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER A 18 OG1 THR A 110 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 109.27 -56.66 REMARK 500 PRO A 5 98.21 -69.99 REMARK 500 ASP A 7 46.96 -99.46 REMARK 500 LEU A 80 75.52 37.29 REMARK 500 HIS A 81 -7.61 61.68 REMARK 500 ASN A 93 -165.33 -127.21 REMARK 500 SER A 109 43.47 -80.95 REMARK 500 LYS A 111 -76.48 -66.83 REMARK 500 ASP B 7 43.06 -94.81 REMARK 500 ASN B 16 34.62 -86.61 REMARK 500 ASN B 21 74.40 -68.77 REMARK 500 PRO B 55 30.94 -92.01 REMARK 500 PRO B 71 -9.87 -57.98 REMARK 500 PHE B 73 32.49 -97.43 REMARK 500 ASN B 93 -159.40 -98.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 283 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B 257 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 258 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 259 DISTANCE = 7.09 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP52003 RELATED DB: TARGETTRACK DBREF 7LGO A 1 115 UNP P0DTD1 R1AB_SARS2 1907 2021 DBREF 7LGO B 1 115 UNP P0DTD1 R1AB_SARS2 1907 2021 SEQRES 1 A 115 PHE THR GLU GLN PRO ILE ASP LEU VAL PRO ASN GLN PRO SEQRES 2 A 115 TYR PRO ASN ALA SER PHE ASP ASN PHE LYS PHE VAL CYS SEQRES 3 A 115 ASP ASN ILE LYS PHE ALA ASP ASP LEU ASN GLN LEU THR SEQRES 4 A 115 GLY TYR LYS LYS PRO ALA SER ARG GLU LEU LYS VAL THR SEQRES 5 A 115 PHE PHE PRO ASP LEU ASN GLY ASP VAL VAL ALA ILE ASP SEQRES 6 A 115 TYR LYS HIS TYR THR PRO SER PHE LYS LYS GLY ALA LYS SEQRES 7 A 115 LEU LEU HIS LYS PRO ILE VAL TRP HIS VAL ASN ASN ALA SEQRES 8 A 115 THR ASN LYS ALA THR TYR LYS PRO ASN THR TRP CYS ILE SEQRES 9 A 115 ARG CYS LEU TRP SER THR LYS PRO VAL GLU THR SEQRES 1 B 115 PHE THR GLU GLN PRO ILE ASP LEU VAL PRO ASN GLN PRO SEQRES 2 B 115 TYR PRO ASN ALA SER PHE ASP ASN PHE LYS PHE VAL CYS SEQRES 3 B 115 ASP ASN ILE LYS PHE ALA ASP ASP LEU ASN GLN LEU THR SEQRES 4 B 115 GLY TYR LYS LYS PRO ALA SER ARG GLU LEU LYS VAL THR SEQRES 5 B 115 PHE PHE PRO ASP LEU ASN GLY ASP VAL VAL ALA ILE ASP SEQRES 6 B 115 TYR LYS HIS TYR THR PRO SER PHE LYS LYS GLY ALA LYS SEQRES 7 B 115 LEU LEU HIS LYS PRO ILE VAL TRP HIS VAL ASN ASN ALA SEQRES 8 B 115 THR ASN LYS ALA THR TYR LYS PRO ASN THR TRP CYS ILE SEQRES 9 B 115 ARG CYS LEU TRP SER THR LYS PRO VAL GLU THR FORMUL 3 HOH *142(H2 O) HELIX 1 AA1 ASN A 28 GLN A 37 1 10 HELIX 2 AA2 LYS A 67 TYR A 69 5 3 HELIX 3 AA3 THR A 70 LYS A 74 5 5 HELIX 4 AA4 THR A 96 LEU A 107 1 12 HELIX 5 AA5 ASN B 28 GLY B 40 1 13 HELIX 6 AA6 LYS B 67 TYR B 69 5 3 HELIX 7 AA7 THR B 70 LYS B 74 5 5 HELIX 8 AA8 THR B 96 THR B 101 1 6 SHEET 1 AA1 6 LEU A 8 PRO A 10 0 SHEET 2 AA1 6 ALA A 77 LEU A 79 -1 O LYS A 78 N VAL A 9 SHEET 3 AA1 6 LYS A 82 HIS A 87 -1 O LYS A 82 N LEU A 79 SHEET 4 AA1 6 VAL A 61 ASP A 65 1 N ILE A 64 O VAL A 85 SHEET 5 AA1 6 GLU A 48 PHE A 53 1 N THR A 52 O VAL A 61 SHEET 6 AA1 6 LYS A 23 VAL A 25 1 N VAL A 25 O VAL A 51 SHEET 1 AA2 6 LEU B 8 PRO B 10 0 SHEET 2 AA2 6 ALA B 77 LEU B 79 -1 O LYS B 78 N VAL B 9 SHEET 3 AA2 6 LYS B 82 HIS B 87 -1 O LYS B 82 N LEU B 79 SHEET 4 AA2 6 VAL B 61 ASP B 65 1 N ILE B 64 O VAL B 85 SHEET 5 AA2 6 GLU B 48 PHE B 53 1 N LYS B 50 O VAL B 61 SHEET 6 AA2 6 LYS B 23 CYS B 26 1 N VAL B 25 O LEU B 49 CISPEP 1 LYS A 43 PRO A 44 0 -4.14 CISPEP 2 PHE A 54 PRO A 55 0 5.32 CISPEP 3 LYS B 43 PRO B 44 0 -3.83 CISPEP 4 PHE B 54 PRO B 55 0 3.25 CRYST1 76.672 76.672 204.146 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013043 0.007530 0.000000 0.00000 SCALE2 0.000000 0.015060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004898 0.00000