HEADER IMMUNE SYSTEM 21-JAN-21 7LGT TITLE HLA-B*07:02 IN COMPLEX WITH 229E-DERIVED CORONAVIRUS NUCLEOCAPSID TITLE 2 PEPTIDE N75-83 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B ALPHA CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: HUMAN LEUKOCYTE ANTIGEN B,HLA-B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: NUCLEOPROTEIN PEPTIDE N75-83; COMPND 12 CHAIN: E, F; COMPND 13 SYNONYM: NUCLEOCAPSID PROTEIN,NC,PROTEIN N; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-B, HLAB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN CORONAVIRUS 229E; SOURCE 18 ORGANISM_COMMON: HCOV-229E; SOURCE 19 ORGANISM_TAXID: 11137 KEYWDS HLA-B7, 229E CORONAVIRUS, SARS-COV-2, T CELL, RECOGNITION, CROSS- KEYWDS 2 RECOGNITION, COVID-19, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.GRAS,C.SZETO,D.S.M.CHATZILEONTIADOU REVDAT 5 18-OCT-23 7LGT 1 REMARK REVDAT 4 11-AUG-21 7LGT 1 COMPND SOURCE DBREF REVDAT 3 26-MAY-21 7LGT 1 JRNL REVDAT 2 19-MAY-21 7LGT 1 JRNL REVDAT 1 21-APR-21 7LGT 0 JRNL AUTH K.E.LINEBURG,E.J.GRANT,S.SWAMINATHAN,D.S.M.CHATZILEONTIADOU, JRNL AUTH 2 C.SZETO,H.SLOANE,A.PANIKKAR,J.RAJU,P.CROOKS,S.REHAN, JRNL AUTH 3 A.T.NGUYEN,L.LEKIEFFRE,M.A.NELLER,Z.W.M.TONG,D.JAYASINGHE, JRNL AUTH 4 K.Y.CHEW,C.A.LOBOS,H.HALIM,J.M.BURROWS, JRNL AUTH 5 A.RIBOLDI-TUNNICLIFFE,W.CHEN,L.D'ORSOGNA,R.KHANNA,K.R.SHORT, JRNL AUTH 6 C.SMITH,S.GRAS JRNL TITL CD8 + T CELLS SPECIFIC FOR AN IMMUNODOMINANT SARS-COV-2 JRNL TITL 2 NUCLEOCAPSID EPITOPE CROSS-REACT WITH SELECTIVE SEASONAL JRNL TITL 3 CORONAVIRUSES. JRNL REF IMMUNITY V. 54 1055 2021 JRNL REFN ISSN 1074-7613 JRNL PMID 33945786 JRNL DOI 10.1016/J.IMMUNI.2021.04.006 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 56846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2808 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2182 REMARK 3 BIN FREE R VALUE : 0.2514 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6341 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6711 ; NULL ; NULL REMARK 3 BOND ANGLES : 9139 ; NULL ; NULL REMARK 3 TORSION ANGLES : 931 ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1217 ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : 914 ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.96 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LGT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000254004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56880 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 44.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.71700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5WMN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350, 0.2 M KI, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 277 REMARK 465 SER A 278 REMARK 465 MET B 99 REMARK 465 SER C 277 REMARK 465 SER C 278 REMARK 465 MET D 0 REMARK 465 ILE D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 485 O HOH B 257 1.92 REMARK 500 NH1 ARG C 157 O HOH C 401 1.96 REMARK 500 OE1 GLU C 163 O HOH C 402 2.03 REMARK 500 OE1 GLU B 74 O HOH B 201 2.06 REMARK 500 NH1 ARG A 62 O HOH A 401 2.07 REMARK 500 O THR A 233 O HOH A 402 2.08 REMARK 500 OE2 GLU A 128 O HOH A 403 2.08 REMARK 500 O HOH D 202 O HOH D 210 2.10 REMARK 500 O HOH C 481 O HOH C 504 2.11 REMARK 500 O PRO A 184 O HOH A 404 2.13 REMARK 500 CL CL B 104 O HOH B 255 2.15 REMARK 500 O LEU A 179 O HOH A 405 2.16 REMARK 500 NZ LYS D 19 O HOH D 201 2.16 REMARK 500 OE1 GLN C 72 NH2 ARG C 75 2.18 REMARK 500 OE1 GLU C 58 O HOH C 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 48 ZN ZN A 301 1556 1.61 REMARK 500 O HOH B 237 O HOH C 513 1654 2.12 REMARK 500 O HOH A 434 O HOH B 238 1554 2.12 REMARK 500 CZ ARG C 108 NZ LYS D 75 1565 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG C 17 CD ARG C 17 NE -0.141 REMARK 500 ARG C 17 CZ ARG C 17 NH1 -0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 179 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 ARG C 17 NH1 - CZ - NH2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG C 17 NE - CZ - NH1 ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG C 17 NE - CZ - NH2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG C 62 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -132.58 50.45 REMARK 500 ALA A 41 -76.36 -49.70 REMARK 500 ASP A 114 98.98 -164.42 REMARK 500 LYS A 178 -63.58 -99.77 REMARK 500 GLU A 180 -70.78 -76.51 REMARK 500 ARG A 181 139.13 -0.95 REMARK 500 GLN A 224 50.80 -111.67 REMARK 500 GLN A 226 -24.96 103.26 REMARK 500 TRP B 60 -0.20 77.64 REMARK 500 ASP C 29 -127.59 56.40 REMARK 500 ASP C 114 104.65 -162.14 REMARK 500 LYS D 48 50.39 75.01 REMARK 500 ASP D 98 76.02 -104.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 107 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 492 O REMARK 620 2 HOH B 263 O 61.8 REMARK 620 N 1 DBREF 7LGT A 1 278 UNP P01889 HLAB_HUMAN 25 302 DBREF 7LGT B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 7LGT C 1 278 UNP P01889 HLAB_HUMAN 25 302 DBREF 7LGT D 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 7LGT E 1 9 UNP P15130 NCAP_CVH22 75 83 DBREF 7LGT F 1 9 UNP P15130 NCAP_CVH22 75 83 SEQADV 7LGT MET B 0 UNP P61769 EXPRESSION TAG SEQADV 7LGT MET D 0 UNP P61769 EXPRESSION TAG SEQRES 1 A 278 GLY SER HIS SER MET ARG TYR PHE TYR THR SER VAL SER SEQRES 2 A 278 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE SER VAL GLY SEQRES 3 A 278 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 278 ALA ALA SER PRO ARG GLU GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 278 GLU GLN GLU GLY PRO GLU TYR TRP ASP ARG ASN THR GLN SEQRES 6 A 278 ILE TYR LYS ALA GLN ALA GLN THR ASP ARG GLU SER LEU SEQRES 7 A 278 ARG ASN LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 278 SER HIS THR LEU GLN SER MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 278 PRO ASP GLY ARG LEU LEU ARG GLY HIS ASP GLN TYR ALA SEQRES 10 A 278 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 278 ARG SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 A 278 GLN ARG LYS TRP GLU ALA ALA ARG GLU ALA GLU GLN ARG SEQRES 13 A 278 ARG ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU ARG SEQRES 14 A 278 ARG TYR LEU GLU ASN GLY LYS ASP LYS LEU GLU ARG ALA SEQRES 15 A 278 ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SER SEQRES 16 A 278 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 278 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 278 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 278 PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 278 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 278 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 278 TRP GLU PRO SER SER SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 278 GLY SER HIS SER MET ARG TYR PHE TYR THR SER VAL SER SEQRES 2 C 278 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE SER VAL GLY SEQRES 3 C 278 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 C 278 ALA ALA SER PRO ARG GLU GLU PRO ARG ALA PRO TRP ILE SEQRES 5 C 278 GLU GLN GLU GLY PRO GLU TYR TRP ASP ARG ASN THR GLN SEQRES 6 C 278 ILE TYR LYS ALA GLN ALA GLN THR ASP ARG GLU SER LEU SEQRES 7 C 278 ARG ASN LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 C 278 SER HIS THR LEU GLN SER MET TYR GLY CYS ASP VAL GLY SEQRES 9 C 278 PRO ASP GLY ARG LEU LEU ARG GLY HIS ASP GLN TYR ALA SEQRES 10 C 278 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 C 278 ARG SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 C 278 GLN ARG LYS TRP GLU ALA ALA ARG GLU ALA GLU GLN ARG SEQRES 13 C 278 ARG ALA TYR LEU GLU GLY GLU CYS VAL GLU TRP LEU ARG SEQRES 14 C 278 ARG TYR LEU GLU ASN GLY LYS ASP LYS LEU GLU ARG ALA SEQRES 15 C 278 ASP PRO PRO LYS THR HIS VAL THR HIS HIS PRO ILE SER SEQRES 16 C 278 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 C 278 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 C 278 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 C 278 PRO ALA GLY ASP ARG THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 C 278 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 C 278 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 C 278 TRP GLU PRO SER SER SEQRES 1 D 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 D 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 D 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 D 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 D 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 D 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 D 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 D 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 E 9 SER PRO LYS LEU HIS PHE TYR TYR LEU SEQRES 1 F 9 SER PRO LYS LEU HIS PHE TYR TYR LEU HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET NA A 306 1 HET CL A 307 1 HET CL A 308 1 HET CL A 309 1 HET CL A 310 1 HET CL A 311 1 HET CL A 312 1 HET K A 313 1 HET K A 314 1 HET K A 315 1 HET K A 316 1 HET ZN B 101 1 HET ZN B 102 1 HET CL B 103 1 HET CL B 104 1 HET BR B 105 1 HET K B 106 1 HET K B 107 1 HET ZN C 301 1 HET ZN C 302 1 HET ZN C 303 1 HET NA C 304 1 HET NA C 305 1 HET NA C 306 1 HET CL C 307 1 HET K C 308 1 HET K C 309 1 HET K C 310 1 HET K C 311 1 HET ZN D 101 1 HET K F 101 1 HET K F 102 1 HETNAM ZN ZINC ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM K POTASSIUM ION HETNAM BR BROMIDE ION FORMUL 7 ZN 11(ZN 2+) FORMUL 12 NA 4(NA 1+) FORMUL 13 CL 9(CL 1-) FORMUL 19 K 12(K 1+) FORMUL 27 BR BR 1- FORMUL 44 HOH *328(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ARG A 151 1 15 HELIX 4 AA4 ARG A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 ARG A 181 1 7 HELIX 7 AA7 GLU A 253 GLN A 255 5 3 HELIX 8 AA8 ALA C 49 GLU C 53 5 5 HELIX 9 AA9 GLY C 56 TYR C 85 1 30 HELIX 10 AB1 ASP C 137 ALA C 150 1 14 HELIX 11 AB2 ARG C 151 GLY C 162 1 12 HELIX 12 AB3 GLY C 162 GLY C 175 1 14 HELIX 13 AB4 GLY C 175 GLU C 180 1 6 HELIX 14 AB5 THR C 225 THR C 228 5 4 HELIX 15 AB6 GLU C 253 GLN C 255 5 3 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N GLY A 26 O PHE A 33 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N PHE A 8 O VAL A 25 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O SER A 97 N TYR A 9 SHEET 6 AA1 8 LEU A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O LEU A 126 N ASP A 114 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O VAL A 249 N ALA A 199 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O VAL A 249 N ALA A 199 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 AA8 8 GLU C 46 PRO C 47 0 SHEET 2 AA8 8 THR C 31 ASP C 37 -1 N ARG C 35 O GLU C 46 SHEET 3 AA8 8 ARG C 21 VAL C 28 -1 N GLY C 26 O PHE C 33 SHEET 4 AA8 8 HIS C 3 VAL C 12 -1 N PHE C 8 O VAL C 25 SHEET 5 AA8 8 THR C 94 VAL C 103 -1 O VAL C 103 N HIS C 3 SHEET 6 AA8 8 LEU C 109 TYR C 118 -1 O LEU C 110 N ASP C 102 SHEET 7 AA8 8 LYS C 121 LEU C 126 -1 O LEU C 126 N ASP C 114 SHEET 8 AA8 8 TRP C 133 ALA C 135 -1 O THR C 134 N ALA C 125 SHEET 1 AA9 4 LYS C 186 PRO C 193 0 SHEET 2 AA9 4 GLU C 198 PHE C 208 -1 O LEU C 206 N LYS C 186 SHEET 3 AA9 4 PHE C 241 PRO C 250 -1 O VAL C 249 N ALA C 199 SHEET 4 AA9 4 GLU C 229 LEU C 230 -1 N GLU C 229 O ALA C 246 SHEET 1 AB1 4 LYS C 186 PRO C 193 0 SHEET 2 AB1 4 GLU C 198 PHE C 208 -1 O LEU C 206 N LYS C 186 SHEET 3 AB1 4 PHE C 241 PRO C 250 -1 O VAL C 249 N ALA C 199 SHEET 4 AB1 4 ARG C 234 PRO C 235 -1 N ARG C 234 O GLN C 242 SHEET 1 AB2 4 GLU C 222 ASP C 223 0 SHEET 2 AB2 4 THR C 214 ARG C 219 -1 N ARG C 219 O GLU C 222 SHEET 3 AB2 4 TYR C 257 GLN C 262 -1 O HIS C 260 N THR C 216 SHEET 4 AB2 4 LEU C 270 LEU C 272 -1 O LEU C 272 N CYS C 259 SHEET 1 AB3 4 LYS D 6 SER D 11 0 SHEET 2 AB3 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 AB3 4 PHE D 62 PHE D 70 -1 O PHE D 70 N ASN D 21 SHEET 4 AB3 4 GLU D 50 HIS D 51 -1 N GLU D 50 O TYR D 67 SHEET 1 AB4 4 LYS D 6 SER D 11 0 SHEET 2 AB4 4 ASN D 21 PHE D 30 -1 O ASN D 24 N TYR D 10 SHEET 3 AB4 4 PHE D 62 PHE D 70 -1 O PHE D 70 N ASN D 21 SHEET 4 AB4 4 SER D 55 PHE D 56 -1 N SER D 55 O TYR D 63 SHEET 1 AB5 4 GLU D 44 ARG D 45 0 SHEET 2 AB5 4 GLU D 36 LYS D 41 -1 N LYS D 41 O GLU D 44 SHEET 3 AB5 4 TYR D 78 ASN D 83 -1 O ALA D 79 N LEU D 40 SHEET 4 AB5 4 LYS D 91 LYS D 94 -1 O LYS D 91 N VAL D 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.08 SSBOND 2 CYS A 203 CYS A 259 1555 1555 1.99 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS C 101 CYS C 164 1555 1555 2.06 SSBOND 5 CYS C 203 CYS C 259 1555 1555 2.03 SSBOND 6 CYS D 25 CYS D 80 1555 1555 2.02 LINK OE2 GLU A 53 ZN ZN A 302 1555 1555 2.28 LINK OD2 ASP A 114 K K A 314 1555 1555 2.73 LINK O ALA A 149 K K A 315 1555 1555 3.48 LINK K K A 313 O HOH C 494 1555 1554 2.73 LINK O HOH A 463 K K C 309 1456 1555 3.12 LINK O HOH A 492 K K B 107 1555 1555 3.24 LINK O HOH A 496 K K F 101 1555 1555 3.05 LINK K K B 107 O HOH B 263 1555 1555 2.57 LINK OE2 GLU C 53 NA NA C 304 1555 1555 3.04 LINK NZ LYS C 178 ZN ZN C 303 1555 1555 2.64 LINK NA NA C 305 O HOH C 496 1555 1555 2.57 LINK K K C 310 O HOH D 220 1555 1555 2.63 LINK O HOH C 477 K K F 102 1554 1555 3.45 LINK ZN ZN D 101 O HOH D 206 1555 1555 1.81 CISPEP 1 TYR A 209 PRO A 210 0 -0.37 CISPEP 2 HIS B 31 PRO B 32 0 5.11 CISPEP 3 TYR C 209 PRO C 210 0 -0.83 CISPEP 4 HIS D 31 PRO D 32 0 -0.64 CRYST1 57.144 62.854 63.010 77.15 77.00 77.86 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017500 -0.003764 -0.003406 0.00000 SCALE2 0.000000 0.016274 -0.003044 0.00000 SCALE3 0.000000 0.000000 0.016570 0.00000