HEADER HYDROLASE 25-JAN-21 7LHK TITLE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A LIPIN/PAH PHOSPHATIDIC ACID TITLE 2 PHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR ELONGATION AND DEFORMATION PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TETRAHYMENA THERMOPHILA (STRAIN SB210); SOURCE 3 ORGANISM_TAXID: 312017; SOURCE 4 STRAIN: SB210; SOURCE 5 GENE: TTHERM_00215970; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3)-RIPL COMPETENT; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPSUMO KEYWDS LIPIN, PHOSPHOHYDROLASE, PHOSPHATIDIC ACID PHOSPHATASE, HALOALKANOIC KEYWDS 2 ACID DEHALOGENASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.I.KHAYYO,M.V.AIROLA REVDAT 2 18-OCT-23 7LHK 1 REMARK REVDAT 1 23-FEB-22 7LHK 0 JRNL AUTH V.I.KHAYYO,M.V.AIROLA JRNL TITL HIGH-RESOLUTION STRUCTURE OF PHOSPHATIDIC ACID JRNL TITL 2 PHOSPHOHYDROLASE FROM TETRAHYMENA THERMOPHILA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 56349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.2500 - 5.2900 1.00 2899 157 0.2132 0.2456 REMARK 3 2 5.2900 - 4.2000 1.00 2810 140 0.1398 0.1714 REMARK 3 3 4.2000 - 3.6700 1.00 2748 136 0.1439 0.1927 REMARK 3 4 3.6700 - 3.3300 1.00 2796 115 0.1494 0.1867 REMARK 3 5 3.3300 - 3.1000 1.00 2712 167 0.1571 0.2273 REMARK 3 6 3.1000 - 2.9100 1.00 2705 142 0.1537 0.1863 REMARK 3 7 2.9100 - 2.7700 1.00 2702 158 0.1526 0.1877 REMARK 3 8 2.7700 - 2.6500 1.00 2716 143 0.1535 0.2076 REMARK 3 9 2.6500 - 2.5400 1.00 2672 156 0.1557 0.1980 REMARK 3 10 2.5400 - 2.4600 1.00 2695 151 0.1499 0.2022 REMARK 3 11 2.4600 - 2.3800 0.99 2709 123 0.1514 0.2153 REMARK 3 12 2.3800 - 2.3100 0.99 2644 170 0.1554 0.2186 REMARK 3 13 2.3100 - 2.2500 0.99 2641 133 0.1601 0.2192 REMARK 3 14 2.2500 - 2.2000 0.99 2679 129 0.1687 0.2267 REMARK 3 15 2.2000 - 2.1500 0.98 2689 117 0.1714 0.2337 REMARK 3 16 2.1500 - 2.1000 0.98 2621 132 0.1743 0.2292 REMARK 3 17 2.1000 - 2.0600 0.97 2648 144 0.1896 0.2593 REMARK 3 18 2.0600 - 2.0200 0.97 2603 129 0.2072 0.2607 REMARK 3 19 2.0200 - 1.9800 0.94 2524 134 0.2352 0.2726 REMARK 3 20 1.9800 - 1.9500 0.88 2354 106 0.2636 0.2872 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.197 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.677 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4935 REMARK 3 ANGLE : 1.094 6668 REMARK 3 CHIRALITY : 0.063 738 REMARK 3 PLANARITY : 0.007 857 REMARK 3 DIHEDRAL : 2.668 4205 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000254310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 720604 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 55.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.08466 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.68600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 6TZY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TT PAH2 IN A RATIO OF 2:1 WITH WELL REMARK 280 SOLUTION OF 0.1M SODIUM CACODYLATE PH 6.5, 1 M NACL, 10% REMARK 280 GLYCEROL, 30% PEG 600, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.42250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.42250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 72.20500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 85.81300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 72.20500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 85.81300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.42250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 72.20500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 85.81300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.42250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 72.20500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 85.81300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 535 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 831 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 918 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 19 REMARK 465 SER A 154 REMARK 465 ASP A 155 REMARK 465 VAL A 156 REMARK 465 LYS A 157 REMARK 465 GLY A 158 REMARK 465 HIS A 159 REMARK 465 ILE A 160 REMARK 465 SER A 161 REMARK 465 THR A 162 REMARK 465 ILE A 163 REMARK 465 ILE A 164 REMARK 465 GLY A 165 REMARK 465 LYS A 166 REMARK 465 GLU A 167 REMARK 465 ARG A 269 REMARK 465 ASP A 270 REMARK 465 THR A 271 REMARK 465 ASP A 272 REMARK 465 ALA B 88 REMARK 465 LYS B 89 REMARK 465 ASN B 90 REMARK 465 ASP B 155 REMARK 465 VAL B 156 REMARK 465 LYS B 157 REMARK 465 GLY B 158 REMARK 465 HIS B 159 REMARK 465 ILE B 160 REMARK 465 SER B 161 REMARK 465 THR B 162 REMARK 465 ILE B 163 REMARK 465 ILE B 164 REMARK 465 GLY B 165 REMARK 465 LYS B 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 66 O HOH A 502 1.16 REMARK 500 HZ1 LYS B 95 O HOH B 703 1.37 REMARK 500 HZ1 LYS B 249 O HOH B 701 1.41 REMARK 500 HZ3 LYS B 249 O HOH B 701 1.48 REMARK 500 H LEU B 86 O HOH B 710 1.53 REMARK 500 HG SER A 293 O HOH A 508 1.55 REMARK 500 OE2 GLU A 257 O HOH A 501 1.56 REMARK 500 HZ3 LYS A 206 O HOH A 506 1.60 REMARK 500 NZ LYS B 249 O HOH B 701 1.69 REMARK 500 O HOH A 791 O HOH A 797 1.84 REMARK 500 O HOH A 720 O HOH A 798 1.86 REMARK 500 NZ LYS A 66 O HOH A 502 1.88 REMARK 500 OE1 GLN A 314 O HOH A 503 1.95 REMARK 500 O HOH A 823 O HOH B 903 1.97 REMARK 500 O HOH A 716 O HOH A 773 2.02 REMARK 500 O ALA B 275 O HOH B 701 2.02 REMARK 500 O HOH A 772 O HOH A 820 2.04 REMARK 500 O HOH A 727 O HOH A 765 2.04 REMARK 500 O HOH B 873 O HOH B 893 2.05 REMARK 500 OE2 GLU B 315 O HOH B 702 2.05 REMARK 500 O HOH A 709 O HOH A 800 2.07 REMARK 500 O HOH A 699 O HOH A 800 2.07 REMARK 500 O HOH B 819 O HOH B 912 2.08 REMARK 500 NZ LYS A 249 O HOH A 504 2.08 REMARK 500 O HOH A 720 O HOH A 817 2.09 REMARK 500 NZ LYS B 95 O HOH B 703 2.12 REMARK 500 O HOH B 895 O HOH B 925 2.12 REMARK 500 O GLY B 79 O HOH B 704 2.14 REMARK 500 NZ LYS A 249 O HOH A 505 2.15 REMARK 500 O HOH B 707 O HOH B 874 2.15 REMARK 500 O PRO B 77 O HOH B 705 2.16 REMARK 500 O HOH B 722 O HOH B 895 2.17 REMARK 500 O HOH A 558 O HOH A 802 2.18 REMARK 500 O HOH A 673 O HOH A 699 2.18 REMARK 500 O HOH A 585 O HOH A 811 2.18 REMARK 500 O HOH A 673 O HOH A 800 2.19 REMARK 500 O HOH B 754 O HOH B 912 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 200 HH21 ARG A 233 3555 1.52 REMARK 500 O HOH A 693 O HOH A 750 3555 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 237 CE2 TYR B 237 CD2 -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 35 -7.04 82.65 REMARK 500 PHE A 46 66.53 -112.67 REMARK 500 SER A 121 -167.27 -127.42 REMARK 500 VAL A 147 -66.06 -96.91 REMARK 500 ILE A 227 59.11 -145.20 REMARK 500 TYR A 237 39.79 -94.88 REMARK 500 GLU A 291 -55.24 -27.33 REMARK 500 GLN A 301 46.77 33.71 REMARK 500 LYS A 312 31.33 -99.80 REMARK 500 ASP B 35 2.06 81.14 REMARK 500 PHE B 46 57.86 -114.90 REMARK 500 GLN B 124 146.70 74.86 REMARK 500 GLN B 301 84.92 -57.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 831 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 832 DISTANCE = 6.17 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CAC A 401 REMARK 610 CAC B 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6TZZ RELATED DB: PDB REMARK 900 MAGNESIUM-BOUND STRUCTURE REMARK 900 RELATED ID: 6TZY RELATED DB: PDB REMARK 900 CALCIUM-BOUND STRUCTURE DBREF 7LHK A 21 321 UNP I7MFJ3 I7MFJ3_TETTS 21 321 DBREF 7LHK B 21 321 UNP I7MFJ3 I7MFJ3_TETTS 21 321 SEQADV 7LHK SER A 19 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK MET A 20 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK ALA A 322 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK ALA A 323 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK ALA A 324 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK LEU A 325 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK GLU A 326 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK HIS A 327 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK HIS A 328 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK HIS A 329 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK HIS A 330 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK HIS A 331 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK SER B 19 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK MET B 20 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK ALA B 322 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK ALA B 323 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK ALA B 324 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK LEU B 325 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK GLU B 326 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK HIS B 327 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK HIS B 328 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK HIS B 329 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK HIS B 330 UNP I7MFJ3 EXPRESSION TAG SEQADV 7LHK HIS B 331 UNP I7MFJ3 EXPRESSION TAG SEQRES 1 A 313 SER MET PHE SER GLY VAL VAL ASP ILE ILE VAL VAL ARG SEQRES 2 A 313 GLN PRO ASP ASP SER LEU LYS SER MET PRO PHE HIS ILE SEQRES 3 A 313 ARG PHE GLY THR LEU LYS VAL LEU ASP ASN GLN ASN ILE SEQRES 4 A 313 ASN ILE GLN ILE THR VAL ASN ASP LYS LYS ILE GLU ASP SEQRES 5 A 313 VAL PHE MET LEU MET LEU PRO GLU GLY ALA CYS TYR PHE SEQRES 6 A 313 PRO GLU LEU ASN ALA LYS ASN GLU ILE GLN LYS LYS LEU SEQRES 7 A 313 ARG PRO SER SER ALA ILE LEU LYS LYS PHE ASN LEU LYS SEQRES 8 A 313 ASN GLY TYR ASN LYS ILE GLN PHE ILE ALA GLU SER ASP SEQRES 9 A 313 LEU GLN GLY LYS GLN LEU ILE GLU GLY LYS ILE TYR LEU SEQRES 10 A 313 TYR ASN TYR ASP THR LYS LEU VAL ILE SER ASP VAL ASP SEQRES 11 A 313 GLY THR VAL THR LYS SER ASP VAL LYS GLY HIS ILE SER SEQRES 12 A 313 THR ILE ILE GLY LYS GLU TRP THR HIS ASP ASP ILE ALA SEQRES 13 A 313 GLU LEU TYR THR ASN ILE GLN LYS ASN GLY TYR LYS MET SEQRES 14 A 313 VAL TYR LEU SER SER ARG PRO LEU TYR PHE TYR ASN TYR SEQRES 15 A 313 THR GLN GLY TYR LEU LYS GLY ILE ILE GLN ASN GLY PHE SEQRES 16 A 313 THR MET PRO ASP GLY PRO ILE LEU LEU SER PRO ASP GLN SEQRES 17 A 313 ILE ILE SER SER LEU ASN ARG GLU VAL VAL TYR LYS LYS SEQRES 18 A 313 ALA ASP GLU PHE LYS GLY ALA LEU LEU LYS ASP LEU ARG SEQRES 19 A 313 ARG VAL PHE PRO GLU GLU VAL ASN PRO ILE PHE ALA GLY SEQRES 20 A 313 PHE GLY ASN ARG ASP THR ASP ALA THR ALA CYS LEU TYR SEQRES 21 A 313 ALA GLY VAL ILE ILE ASP ASN ILE PHE ILE ILE ASN GLU SEQRES 22 A 313 GLN SER GLN VAL GLU ILE LEU GLY LYS GLN GLU LYS SER SEQRES 23 A 313 SER TYR LYS LYS ILE ASN GLU LYS ILE GLN GLU LEU PHE SEQRES 24 A 313 PRO ARG LEU PRO ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 25 A 313 HIS SEQRES 1 B 313 SER MET PHE SER GLY VAL VAL ASP ILE ILE VAL VAL ARG SEQRES 2 B 313 GLN PRO ASP ASP SER LEU LYS SER MET PRO PHE HIS ILE SEQRES 3 B 313 ARG PHE GLY THR LEU LYS VAL LEU ASP ASN GLN ASN ILE SEQRES 4 B 313 ASN ILE GLN ILE THR VAL ASN ASP LYS LYS ILE GLU ASP SEQRES 5 B 313 VAL PHE MET LEU MET LEU PRO GLU GLY ALA CYS TYR PHE SEQRES 6 B 313 PRO GLU LEU ASN ALA LYS ASN GLU ILE GLN LYS LYS LEU SEQRES 7 B 313 ARG PRO SER SER ALA ILE LEU LYS LYS PHE ASN LEU LYS SEQRES 8 B 313 ASN GLY TYR ASN LYS ILE GLN PHE ILE ALA GLU SER ASP SEQRES 9 B 313 LEU GLN GLY LYS GLN LEU ILE GLU GLY LYS ILE TYR LEU SEQRES 10 B 313 TYR ASN TYR ASP THR LYS LEU VAL ILE SER ASP VAL ASP SEQRES 11 B 313 GLY THR VAL THR LYS SER ASP VAL LYS GLY HIS ILE SER SEQRES 12 B 313 THR ILE ILE GLY LYS GLU TRP THR HIS ASP ASP ILE ALA SEQRES 13 B 313 GLU LEU TYR THR ASN ILE GLN LYS ASN GLY TYR LYS MET SEQRES 14 B 313 VAL TYR LEU SER SER ARG PRO LEU TYR PHE TYR ASN TYR SEQRES 15 B 313 THR GLN GLY TYR LEU LYS GLY ILE ILE GLN ASN GLY PHE SEQRES 16 B 313 THR MET PRO ASP GLY PRO ILE LEU LEU SER PRO ASP GLN SEQRES 17 B 313 ILE ILE SER SER LEU ASN ARG GLU VAL VAL TYR LYS LYS SEQRES 18 B 313 ALA ASP GLU PHE LYS GLY ALA LEU LEU LYS ASP LEU ARG SEQRES 19 B 313 ARG VAL PHE PRO GLU GLU VAL ASN PRO ILE PHE ALA GLY SEQRES 20 B 313 PHE GLY ASN ARG ASP THR ASP ALA THR ALA CYS LEU TYR SEQRES 21 B 313 ALA GLY VAL ILE ILE ASP ASN ILE PHE ILE ILE ASN GLU SEQRES 22 B 313 GLN SER GLN VAL GLU ILE LEU GLY LYS GLN GLU LYS SER SEQRES 23 B 313 SER TYR LYS LYS ILE ASN GLU LYS ILE GLN GLU LEU PHE SEQRES 24 B 313 PRO ARG LEU PRO ALA ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 25 B 313 HIS HET CAC A 401 10 HET CAC B 401 4 HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 3 CAC 2(C2 H6 AS O2 1-) FORMUL 5 HOH *576(H2 O) HELIX 1 AA1 ASP A 53 ILE A 57 5 5 HELIX 2 AA2 SER A 99 PHE A 106 1 8 HELIX 3 AA3 ASP A 172 ASN A 183 1 12 HELIX 4 AA4 PRO A 194 TYR A 196 5 3 HELIX 5 AA5 PHE A 197 ILE A 208 1 12 HELIX 6 AA6 PRO A 224 ILE A 227 5 4 HELIX 7 AA7 SER A 229 LYS A 238 5 10 HELIX 8 AA8 LYS A 239 ASP A 241 5 3 HELIX 9 AA9 GLU A 242 VAL A 254 1 13 HELIX 10 AB1 THR A 274 ALA A 279 1 6 HELIX 11 AB2 ILE A 282 ASP A 284 5 3 HELIX 12 AB3 SER A 305 LYS A 312 1 8 HELIX 13 AB4 LYS A 312 PHE A 317 1 6 HELIX 14 AB5 LEU A 320 HIS A 329 1 10 HELIX 15 AB6 ASP B 53 ILE B 57 5 5 HELIX 16 AB7 SER B 99 PHE B 106 1 8 HELIX 17 AB8 ASP B 172 ASN B 183 1 12 HELIX 18 AB9 PHE B 197 ILE B 208 1 12 HELIX 19 AC1 ARG B 233 PHE B 255 1 23 HELIX 20 AC2 ALA B 273 ALA B 279 1 7 HELIX 21 AC3 ILE B 282 ASP B 284 5 3 HELIX 22 AC4 SER B 305 LYS B 312 1 8 HELIX 23 AC5 LYS B 312 PHE B 317 1 6 HELIX 24 AC6 LEU B 320 HIS B 329 1 10 SHEET 1 AA1 2 SER A 22 VAL A 24 0 SHEET 2 AA1 2 ILE A 44 PHE A 46 -1 O ARG A 45 N GLY A 23 SHEET 1 AA2 6 LEU A 37 SER A 39 0 SHEET 2 AA2 6 ILE A 27 ARG A 31 -1 N VAL A 30 O LYS A 38 SHEET 3 AA2 6 GLN A 127 ASN A 137 1 O TYR A 134 N ILE A 27 SHEET 4 AA2 6 GLY A 111 GLU A 120 -1 N ILE A 115 O GLY A 131 SHEET 5 AA2 6 ASN A 58 VAL A 63 -1 N ASN A 58 O GLU A 120 SHEET 6 AA2 6 LYS A 66 LYS A 67 -1 O LYS A 66 N VAL A 63 SHEET 1 AA3 3 LEU A 74 MET A 75 0 SHEET 2 AA3 3 CYS A 81 LEU A 86 -1 O TYR A 82 N LEU A 74 SHEET 3 AA3 3 ILE A 92 LYS A 95 -1 O LYS A 95 N PHE A 83 SHEET 1 AA4 7 ILE A 220 LEU A 222 0 SHEET 2 AA4 7 LYS A 186 SER A 191 1 N TYR A 189 O LEU A 221 SHEET 3 AA4 7 LEU A 142 ASP A 146 1 N VAL A 143 O LYS A 186 SHEET 4 AA4 7 ILE A 262 GLY A 267 1 O PHE A 263 N LEU A 142 SHEET 5 AA4 7 ILE A 286 ILE A 289 1 O PHE A 287 N GLY A 267 SHEET 6 AA4 7 VAL A 295 ILE A 297 -1 O GLU A 296 N ILE A 288 SHEET 7 AA4 7 GLU A 302 SER A 304 -1 O SER A 304 N VAL A 295 SHEET 1 AA5 2 SER B 22 VAL B 24 0 SHEET 2 AA5 2 ILE B 44 PHE B 46 -1 O ARG B 45 N GLY B 23 SHEET 1 AA6 8 LEU B 37 SER B 39 0 SHEET 2 AA6 8 ILE B 27 ARG B 31 -1 N VAL B 30 O LYS B 38 SHEET 3 AA6 8 LYS B 126 ASN B 137 1 O TYR B 134 N ILE B 27 SHEET 4 AA6 8 GLY B 111 GLU B 120 -1 N ILE B 115 O GLY B 131 SHEET 5 AA6 8 ILE B 59 VAL B 63 -1 N GLN B 60 O ILE B 118 SHEET 6 AA6 8 LYS B 66 MET B 75 -1 O ILE B 68 N ILE B 61 SHEET 7 AA6 8 CYS B 81 GLU B 85 -1 O TYR B 82 N LEU B 74 SHEET 8 AA6 8 GLN B 93 LYS B 95 -1 O GLN B 93 N GLU B 85 SHEET 1 AA7 7 ILE B 220 SER B 223 0 SHEET 2 AA7 7 LYS B 186 PRO B 194 1 N TYR B 189 O LEU B 221 SHEET 3 AA7 7 LEU B 142 ASP B 146 1 N SER B 145 O VAL B 188 SHEET 4 AA7 7 ILE B 262 ASN B 268 1 O ALA B 264 N ILE B 144 SHEET 5 AA7 7 ILE B 286 ILE B 289 1 O PHE B 287 N GLY B 267 SHEET 6 AA7 7 VAL B 295 ILE B 297 -1 O GLU B 296 N ILE B 288 SHEET 7 AA7 7 GLU B 302 SER B 304 -1 O SER B 304 N VAL B 295 SHEET 1 AA8 2 THR B 152 LYS B 153 0 SHEET 2 AA8 2 TRP B 168 THR B 169 -1 O TRP B 168 N LYS B 153 SITE 1 AC1 4 LEU A 248 GLY A 265 ALA A 273 CYS A 276 SITE 1 AC2 5 PHE B 266 THR B 271 ASP B 272 ALA B 273 SITE 2 AC2 5 CYS B 276 CRYST1 144.410 171.626 62.845 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006925 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015912 0.00000