HEADER OXIDOREDUCTASE/INHIBITOR 26-JAN-21 7LHP TITLE CRYSTAL STRUCTURE OF ECDSBA IN A COMPLEX WITH METHYL 2-(6-BROMO-2- TITLE 2 PHENYLBENZOFURAN-3-YL)ACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: B0013 KEYWDS DISULFIDE OXIDOREDUCTASE, REDOX PROTEIN, OXIDOREDUCTASE-INHIBITOR KEYWDS 2 COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.V.ILYICHOVA,M.J.SCANLON REVDAT 3 18-OCT-23 7LHP 1 REMARK REVDAT 2 25-AUG-21 7LHP 1 JRNL REVDAT 1 11-AUG-21 7LHP 0 JRNL AUTH L.F.DUNCAN,G.WANG,O.V.ILYICHOVA,R.DHOUIB,M.TOTSIKA, JRNL AUTH 2 M.J.SCANLON,B.HERAS,B.M.ABBOTT JRNL TITL ELABORATION OF A BENZOFURAN SCAFFOLD AND EVALUATION OF JRNL TITL 2 BINDING AFFINITY AND INHIBITION OF ESCHERICHIA COLI DSBA: A JRNL TITL 3 FRAGMENT-BASED DRUG DESIGN APPROACH TO NOVEL ANTIVIRULENCE JRNL TITL 4 COMPOUNDS. JRNL REF BIOORG.MED.CHEM. V. 45 16315 2021 JRNL REFN ESSN 1464-3391 JRNL PMID 34364222 JRNL DOI 10.1016/J.BMC.2021.116315 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3200 - 4.3500 1.00 2953 123 0.1572 0.1786 REMARK 3 2 4.3500 - 3.4500 1.00 2868 138 0.1464 0.2059 REMARK 3 3 3.4500 - 3.0200 1.00 2817 147 0.1689 0.2066 REMARK 3 4 3.0200 - 2.7400 1.00 2827 158 0.1841 0.2266 REMARK 3 5 2.7400 - 2.5400 1.00 2837 152 0.1798 0.2459 REMARK 3 6 2.5400 - 2.3900 1.00 2804 143 0.1858 0.2353 REMARK 3 7 2.3900 - 2.2700 1.00 2780 184 0.1928 0.2498 REMARK 3 8 2.2700 - 2.1700 1.00 2822 145 0.2129 0.2784 REMARK 3 9 2.1700 - 2.0900 1.00 2838 130 0.2213 0.2886 REMARK 3 10 2.0900 - 2.0200 1.00 2835 136 0.2337 0.2622 REMARK 3 11 2.0200 - 1.9600 1.00 2816 130 0.2543 0.2849 REMARK 3 12 1.9600 - 1.9000 1.00 2800 139 0.2988 0.3223 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.238 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.821 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2988 REMARK 3 ANGLE : 0.866 4066 REMARK 3 CHIRALITY : 0.050 449 REMARK 3 PLANARITY : 0.006 554 REMARK 3 DIHEDRAL : 4.759 419 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0609 -8.8986 1.3459 REMARK 3 T TENSOR REMARK 3 T11: 0.1957 T22: 0.3126 REMARK 3 T33: 0.1778 T12: -0.0442 REMARK 3 T13: -0.0203 T23: -0.0380 REMARK 3 L TENSOR REMARK 3 L11: 0.4666 L22: 3.9823 REMARK 3 L33: 2.8323 L12: -0.4442 REMARK 3 L13: 0.7232 L23: 1.9182 REMARK 3 S TENSOR REMARK 3 S11: 0.0983 S12: 0.2203 S13: -0.0749 REMARK 3 S21: -0.3196 S22: -0.0989 S23: 0.0985 REMARK 3 S31: -0.0900 S32: 0.3401 S33: -0.0105 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.6773 -4.6746 9.3302 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.2365 REMARK 3 T33: 0.1372 T12: -0.0552 REMARK 3 T13: -0.0209 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.2111 L22: 2.4964 REMARK 3 L33: 2.6800 L12: -0.4602 REMARK 3 L13: 0.4031 L23: 1.0605 REMARK 3 S TENSOR REMARK 3 S11: -0.0889 S12: 0.2149 S13: -0.0844 REMARK 3 S21: -0.1073 S22: -0.0209 S23: 0.0874 REMARK 3 S31: -0.0639 S32: 0.2540 S33: 0.0710 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4800 13.7969 25.7748 REMARK 3 T TENSOR REMARK 3 T11: 0.5653 T22: 0.2710 REMARK 3 T33: 0.3704 T12: 0.0934 REMARK 3 T13: 0.1129 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 3.3691 L22: 3.0621 REMARK 3 L33: 3.9638 L12: 0.2668 REMARK 3 L13: -3.2414 L23: 1.3514 REMARK 3 S TENSOR REMARK 3 S11: 0.5411 S12: 0.2509 S13: 0.6668 REMARK 3 S21: -0.8013 S22: -0.0876 S23: 0.1096 REMARK 3 S31: -1.3430 S32: -0.1741 S33: -0.3728 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6825 5.8962 15.1867 REMARK 3 T TENSOR REMARK 3 T11: 0.5079 T22: 0.7597 REMARK 3 T33: 0.7203 T12: 0.1962 REMARK 3 T13: -0.0910 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 1.2080 L22: 8.1579 REMARK 3 L33: 4.1493 L12: 0.3665 REMARK 3 L13: 1.8997 L23: -2.4815 REMARK 3 S TENSOR REMARK 3 S11: 0.0761 S12: 0.3380 S13: 0.6344 REMARK 3 S21: -0.6664 S22: 0.2782 S23: 1.3374 REMARK 3 S31: -0.2577 S32: -1.1844 S33: -0.3841 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9306 -6.6142 23.5296 REMARK 3 T TENSOR REMARK 3 T11: 0.2171 T22: 0.1598 REMARK 3 T33: 0.3020 T12: 0.0081 REMARK 3 T13: 0.0676 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.2841 L22: 2.3068 REMARK 3 L33: 5.1045 L12: 1.1540 REMARK 3 L13: -0.4708 L23: 2.1039 REMARK 3 S TENSOR REMARK 3 S11: 0.1364 S12: 0.0852 S13: 0.0727 REMARK 3 S21: 0.1251 S22: -0.0690 S23: 0.3533 REMARK 3 S31: -0.0265 S32: -0.2477 S33: -0.0719 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4370 -5.5608 18.5737 REMARK 3 T TENSOR REMARK 3 T11: 0.2274 T22: 0.4445 REMARK 3 T33: 0.4106 T12: 0.0169 REMARK 3 T13: -0.0680 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 2.6244 L22: 7.0845 REMARK 3 L33: 3.9665 L12: -0.8851 REMARK 3 L13: 0.8088 L23: 1.7669 REMARK 3 S TENSOR REMARK 3 S11: 0.1210 S12: -0.2031 S13: 0.4101 REMARK 3 S21: -0.5257 S22: -0.2582 S23: 0.7541 REMARK 3 S31: -0.4079 S32: -0.5342 S33: 0.1711 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4882 -19.6029 14.8356 REMARK 3 T TENSOR REMARK 3 T11: 0.1553 T22: 0.2066 REMARK 3 T33: 0.1941 T12: -0.0213 REMARK 3 T13: -0.0122 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 4.5756 L22: 5.7189 REMARK 3 L33: 4.1478 L12: 0.5932 REMARK 3 L13: -1.8864 L23: 1.3485 REMARK 3 S TENSOR REMARK 3 S11: -0.0822 S12: 0.1132 S13: -0.2228 REMARK 3 S21: -0.2305 S22: -0.1643 S23: -0.0224 REMARK 3 S31: 0.0940 S32: -0.2544 S33: 0.2273 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3215 -26.2862 12.0860 REMARK 3 T TENSOR REMARK 3 T11: 0.2656 T22: 0.3720 REMARK 3 T33: 0.2661 T12: -0.1090 REMARK 3 T13: -0.0276 T23: -0.0796 REMARK 3 L TENSOR REMARK 3 L11: 7.0163 L22: 4.5939 REMARK 3 L33: 5.7047 L12: 0.9001 REMARK 3 L13: 1.9850 L23: -1.4166 REMARK 3 S TENSOR REMARK 3 S11: -0.3020 S12: 0.3056 S13: -0.5180 REMARK 3 S21: -0.7350 S22: 0.0779 S23: 0.3529 REMARK 3 S31: 0.6128 S32: -0.7325 S33: 0.1503 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7733 -2.0325 13.1112 REMARK 3 T TENSOR REMARK 3 T11: 0.4656 T22: 0.4526 REMARK 3 T33: 0.4088 T12: 0.1782 REMARK 3 T13: -0.0359 T23: 0.1286 REMARK 3 L TENSOR REMARK 3 L11: 2.9186 L22: 1.9186 REMARK 3 L33: 2.0869 L12: -0.2640 REMARK 3 L13: 0.4205 L23: 0.6844 REMARK 3 S TENSOR REMARK 3 S11: 0.2098 S12: 0.3287 S13: 0.6312 REMARK 3 S21: -0.8101 S22: -0.0223 S23: 0.5057 REMARK 3 S31: -0.7105 S32: -0.7074 S33: -0.0118 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3671 6.3753 27.5129 REMARK 3 T TENSOR REMARK 3 T11: 0.4503 T22: 0.3260 REMARK 3 T33: 0.5094 T12: -0.0641 REMARK 3 T13: 0.1909 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.9593 L22: 5.9322 REMARK 3 L33: 5.3281 L12: 1.9397 REMARK 3 L13: -2.6922 L23: -4.9908 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: -0.1615 S13: 0.0847 REMARK 3 S21: -0.5539 S22: -0.2953 S23: -0.8884 REMARK 3 S31: -0.5090 S32: 1.1573 S33: 0.4149 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4534 4.8444 30.6813 REMARK 3 T TENSOR REMARK 3 T11: 0.3712 T22: 0.1996 REMARK 3 T33: 0.4853 T12: 0.0579 REMARK 3 T13: 0.1940 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 2.0655 L22: 3.4622 REMARK 3 L33: 5.9668 L12: -0.3404 REMARK 3 L13: 1.1503 L23: 0.9491 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: -0.0943 S13: 0.4464 REMARK 3 S21: 0.2462 S22: -0.1826 S23: 0.3656 REMARK 3 S31: -0.3408 S32: -0.5156 S33: 0.1788 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LHP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000253811. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.87100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13 % PEG 8000, 5-7.5% GLYCEROL, REMARK 280 100MM NA CACODYLATE PH6.1, 1MM CUCL2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.10550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.90150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.10550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.90150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 455 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 GLU B 13 CD OE1 OE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 70 CD CE NZ REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 PHE B 129 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 GLN B 146 CG CD OE1 NE2 REMARK 470 ARG B 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 470 GLN B 164 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 153 CG - SD - CE ANGL. DEV. = 10.3 DEGREES REMARK 500 CYS B 30 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -77.45 -100.60 REMARK 500 GLN A 146 73.34 43.26 REMARK 500 LYS B 7 -85.98 -90.46 REMARK 500 PHE B 63 20.73 -77.39 REMARK 500 LYS B 98 -62.26 -104.10 REMARK 500 SER B 169 -67.41 -105.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ALA B 1 O 83.6 REMARK 620 3 GLU B 4 OE2 171.2 98.6 REMARK 620 4 ASP B 44 OD1 104.7 21.7 77.0 REMARK 620 5 ASP B 44 OD2 106.4 22.8 75.9 4.2 REMARK 620 6 HOH B 438 O 92.1 94.7 96.1 98.9 95.0 REMARK 620 N 1 2 3 4 5 DBREF 7LHP A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 7LHP B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET Y1G A 201 20 HET CU B 201 1 HETNAM Y1G (6-BROMO-2-PHENYL-1-BENZOFURAN-3-YL)ACETIC ACID HETNAM CU COPPER (II) ION FORMUL 3 Y1G C16 H11 BR O3 FORMUL 4 CU CU 2+ FORMUL 5 HOH *396(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LEU A 50 1 10 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 LYS B 98 1 15 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 GLU B 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N VAL A 155 O TYR A 159 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N PHE A 25 O ALA A 152 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N VAL A 22 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N LEU B 23 O PHE B 154 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N GLU B 24 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.08 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.08 LINK N ALA B 1 CU CU B 201 1555 1555 2.16 LINK O ALA B 1 CU CU B 201 1555 1555 2.05 LINK OE2 GLU B 4 CU CU B 201 1555 1555 2.02 LINK OD1 ASP B 44 CU CU B 201 1555 4546 2.37 LINK OD2 ASP B 44 CU CU B 201 1555 4546 2.54 LINK CU CU B 201 O HOH B 438 1555 4556 2.39 CISPEP 1 VAL A 150 PRO A 151 0 -1.18 CISPEP 2 VAL B 150 PRO B 151 0 -6.48 CRYST1 118.211 63.803 74.767 90.00 125.71 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008459 0.000000 0.006080 0.00000 SCALE2 0.000000 0.015673 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016471 0.00000