HEADER VIRAL PROTEIN 26-JAN-21 7LHQ TITLE SOLUTION STRUCTURE OF SARS-COV-2 NONSTRUCTURAL PROTEIN 7 AT PH 7.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NSP7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-46 KEYWDS COVID-19, SARS-COV-2, NSP7, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.LEE,M.TONELLI,T.K.ANDERSON,R.N.KIRCHDOERFER,K.HENZLER-WILDMAN,W.LEE REVDAT 3 14-JUN-23 7LHQ 1 REMARK REVDAT 2 12-OCT-22 7LHQ 1 JRNL REVDAT 1 09-FEB-22 7LHQ 0 JRNL AUTH Y.LEE,M.TONELLI,M.RAHIMI,T.K.ANDERSON,R.N.KIRCHDOERFER, JRNL AUTH 2 K.HENZLER-WILDMAN,W.LEE JRNL TITL PH-DEPENDENT POLYMORPHISM OF THE STRUCTURE OF SARS-COV-2 JRNL TITL 2 NSP7 JRNL REF BIORXIV 2021 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2021.09.10.459800 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000254265. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.7 MM [U-100% 13C; U-100% 15N] REMARK 210 SARS-COV-2 NSP7, 10 MM MOPS, 150 REMARK 210 MM SODIUM CHLORIDE, 2 MM DTT, REMARK 210 0.025 % SODIUM AZIDE, 93% H2O/7% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HN(CA)CO; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 3D REMARK 210 C(CO)NH; 3D HBHA(CO)NH; 3D H(CCO) REMARK 210 NH; 3D H(C)CH-TOCSY ALIPHATIC; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D (HB) REMARK 210 CB(CGCD)HE; 3D H(C)CH-TOCSY REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : VNMRS; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, PONDEROSA-C/S, REMARK 210 NMRFAM-SPARKY, NMRPIPE, VNMR, REMARK 210 TOPSPIN REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 10 96.65 52.35 REMARK 500 1 ARG A 22 37.50 71.26 REMARK 500 1 GLN A 64 -30.66 -158.36 REMARK 500 1 ASP A 68 -29.30 168.86 REMARK 500 2 ARG A 22 37.41 71.34 REMARK 500 2 GLN A 64 -30.52 -158.69 REMARK 500 2 ASP A 68 -29.32 168.98 REMARK 500 2 THR A 82 94.06 52.13 REMARK 500 3 ARG A 22 37.82 71.75 REMARK 500 3 GLN A 64 -30.91 -158.01 REMARK 500 3 ASP A 68 -25.41 168.42 REMARK 500 4 ARG A 22 37.05 73.74 REMARK 500 4 GLN A 64 -30.73 -158.36 REMARK 500 4 ASP A 68 -30.42 167.31 REMARK 500 5 VAL A 7 -60.87 -99.77 REMARK 500 5 ARG A 22 37.39 71.33 REMARK 500 5 GLN A 64 -30.46 -158.74 REMARK 500 5 ASP A 68 -28.88 168.90 REMARK 500 6 ARG A 22 37.44 72.14 REMARK 500 6 GLN A 64 -30.18 -155.21 REMARK 500 6 ASP A 68 -25.11 168.62 REMARK 500 7 ASP A 6 -178.03 53.42 REMARK 500 7 ARG A 22 36.72 74.10 REMARK 500 7 GLN A 64 -30.82 -158.16 REMARK 500 7 ASP A 68 -25.20 164.13 REMARK 500 8 ARG A 22 36.24 76.11 REMARK 500 8 GLN A 64 -30.42 -158.87 REMARK 500 8 ASP A 68 -30.31 169.01 REMARK 500 9 ARG A 22 36.41 76.17 REMARK 500 9 GLN A 64 -30.49 -158.12 REMARK 500 9 ASP A 68 -30.49 169.11 REMARK 500 10 ARG A 22 37.75 75.44 REMARK 500 10 GLN A 64 -30.56 -158.43 REMARK 500 10 ASP A 68 -30.86 169.92 REMARK 500 11 SER A 2 -76.26 65.22 REMARK 500 11 ARG A 22 37.91 75.95 REMARK 500 11 GLN A 64 -30.90 -161.68 REMARK 500 11 ASP A 68 -31.00 168.76 REMARK 500 12 VAL A 7 92.66 50.96 REMARK 500 12 ARG A 22 37.16 75.87 REMARK 500 12 GLN A 64 -30.41 -158.78 REMARK 500 12 ASP A 68 -30.02 168.65 REMARK 500 13 LYS A 3 -177.51 54.33 REMARK 500 13 ARG A 22 37.40 76.18 REMARK 500 13 GLN A 64 -30.44 -158.34 REMARK 500 13 ASP A 68 -32.26 168.73 REMARK 500 14 ARG A 22 33.98 75.67 REMARK 500 14 GLN A 64 -30.43 -158.86 REMARK 500 14 ASP A 68 -30.84 168.98 REMARK 500 15 THR A 10 99.39 55.66 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50337 RELATED DB: BMRB DBREF 7LHQ A 2 84 UNP P0DTD1 R1AB_SARS2 3860 3942 SEQADV 7LHQ GLY A 1 UNP P0DTD1 EXPRESSION TAG SEQRES 1 A 84 GLY SER LYS MET SER ASP VAL LYS CYS THR SER VAL VAL SEQRES 2 A 84 LEU LEU SER VAL LEU GLN GLN LEU ARG VAL GLU SER SER SEQRES 3 A 84 SER LYS LEU TRP ALA GLN CYS VAL GLN LEU HIS ASN ASP SEQRES 4 A 84 ILE LEU LEU ALA LYS ASP THR THR GLU ALA PHE GLU LYS SEQRES 5 A 84 MET VAL SER LEU LEU SER VAL LEU LEU SER MET GLN GLY SEQRES 6 A 84 ALA VAL ASP ILE ASN LYS LEU CYS GLU GLU MET LEU ASP SEQRES 7 A 84 ASN ARG ALA THR LEU GLN HELIX 1 AA1 SER A 11 ARG A 22 1 12 HELIX 2 AA2 SER A 27 ALA A 43 1 17 HELIX 3 AA3 ASP A 45 GLN A 64 1 20 HELIX 4 AA4 ASP A 68 ALA A 81 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1