HEADER OXIDOREDUCTASE 26-JAN-21 7LHS TITLE CRYSTAL STRUCTURE OF ADENOSINE-5'-PHOSPHOSULFATE REDUCTASE FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS IN A COMPLEX WITH SUBSTRATE APS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOADENOSINE PHOSPHOSULFATE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3'-PHOSPHOADENYLYLSULFATE REDUCTASE,PAPS REDUCTASE, COMPND 5 THIOREDOXIN DEPENDENT,PAPS SULFOTRANSFERASE,PADOPS REDUCTASE, COMPND 6 ADENOSINE-5'-PHOSPHOSULFATE REDUCTASE; COMPND 7 EC: 1.8.4.8; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: CYSH, MRA_2416; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SUBSTRATE, APS, ADENOSINE-5'-PHOSPHOSULFATE REDUCTASE, TUBERCULOSIS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.R.FELICIANO,C.L.DRENNAN REVDAT 2 18-OCT-23 7LHS 1 REMARK REVDAT 1 07-JUL-21 7LHS 0 JRNL AUTH P.R.FELICIANO,K.S.CARROLL,C.L.DRENNAN JRNL TITL CRYSTAL STRUCTURE OF THE [4FE-4S] CLUSTER-CONTAINING JRNL TITL 2 ADENOSINE-5'-PHOSPHOSULFATE REDUCTASE FROM MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS . JRNL REF ACS OMEGA V. 6 13756 2021 JRNL REFN ESSN 2470-1343 JRNL PMID 34095667 JRNL DOI 10.1021/ACSOMEGA.1C01043 REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 11834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3400 - 4.9300 1.00 2994 159 0.1971 0.2316 REMARK 3 2 4.9300 - 3.9200 1.00 2807 148 0.2122 0.2835 REMARK 3 3 3.9200 - 3.4200 1.00 2771 145 0.2520 0.2896 REMARK 3 4 3.4200 - 3.1100 0.97 2669 141 0.3220 0.3661 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 108.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3303 REMARK 3 ANGLE : 0.512 4560 REMARK 3 CHIRALITY : 0.040 546 REMARK 3 PLANARITY : 0.004 577 REMARK 3 DIHEDRAL : 28.101 488 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 79.9664 42.9740 231.1241 REMARK 3 T TENSOR REMARK 3 T11: 0.7468 T22: 0.5774 REMARK 3 T33: 0.6311 T12: -0.0159 REMARK 3 T13: 0.0512 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.8587 L22: 0.9920 REMARK 3 L33: 5.3246 L12: -0.2099 REMARK 3 L13: -1.6046 L23: 1.0918 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: -0.0971 S13: 0.2643 REMARK 3 S21: 0.0816 S22: 0.1413 S23: -0.0191 REMARK 3 S31: -0.3342 S32: -0.1806 S33: -0.0893 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND ((RESID 8 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 9 THROUGH 11 OR (RESID 12 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 13 THROUGH 18 OR REMARK 3 (RESID 19 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR (RESID 20 REMARK 3 THROUGH 23 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 24 REMARK 3 THROUGH 41 OR RESID 60 THROUGH 117 OR REMARK 3 (RESID 118 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 119 REMARK 3 THROUGH 125 OR (RESID 126 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 127 THROUGH 183 OR (RESID 184 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 185 THROUGH 186 REMARK 3 OR (RESID 187 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 188 THROUGH 301 OR RESID 401)) REMARK 3 SELECTION : (CHAIN B AND (RESID 8 THROUGH 37 OR REMARK 3 (RESID 38 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 39 REMARK 3 THROUGH 175 OR (RESID 176 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 177 THROUGH 301 OR RESID 401)) REMARK 3 ATOM PAIRS NUMBER : 1282 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LHS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11945 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.14300 REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.68500 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7LHR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, PEG 20000, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.65500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.75100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.75100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 153.98250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.75100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.75100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.32750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.75100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.75100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 153.98250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.75100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.75100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.32750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 102.65500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 44 REMARK 465 GLY A 45 REMARK 465 ALA A 46 REMARK 465 GLY A 47 REMARK 465 GLY A 48 REMARK 465 GLY A 49 REMARK 465 VAL A 50 REMARK 465 SER A 51 REMARK 465 GLY A 52 REMARK 465 HIS A 53 REMARK 465 ARG A 54 REMARK 465 GLY A 55 REMARK 465 TRP A 56 REMARK 465 GLU A 232 REMARK 465 GLY A 233 REMARK 465 ALA A 234 REMARK 465 ASP A 235 REMARK 465 PRO A 236 REMARK 465 ARG A 237 REMARK 465 SER A 238 REMARK 465 GLY A 239 REMARK 465 ARG A 240 REMARK 465 TRP A 241 REMARK 465 GLN A 242 REMARK 465 GLY A 243 REMARK 465 LEU A 244 REMARK 465 ALA A 245 REMARK 465 LYS A 246 REMARK 465 THR A 247 REMARK 465 GLU A 248 REMARK 465 CYS A 249 REMARK 465 GLY A 250 REMARK 465 LEU A 251 REMARK 465 HIS A 252 REMARK 465 ALA A 253 REMARK 465 SER A 254 REMARK 465 LEU A 255 REMARK 465 GLU A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 THR B 5 REMARK 465 THR B 6 REMARK 465 ARG B 7 REMARK 465 ASP B 42 REMARK 465 ILE B 43 REMARK 465 GLY B 44 REMARK 465 GLY B 45 REMARK 465 ALA B 46 REMARK 465 GLY B 47 REMARK 465 GLY B 48 REMARK 465 GLY B 49 REMARK 465 VAL B 50 REMARK 465 SER B 51 REMARK 465 GLY B 52 REMARK 465 HIS B 53 REMARK 465 ARG B 54 REMARK 465 GLY B 55 REMARK 465 TRP B 56 REMARK 465 THR B 57 REMARK 465 THR B 58 REMARK 465 CYS B 59 REMARK 465 GLU B 232 REMARK 465 GLY B 233 REMARK 465 ALA B 234 REMARK 465 ASP B 235 REMARK 465 PRO B 236 REMARK 465 ARG B 237 REMARK 465 SER B 238 REMARK 465 GLY B 239 REMARK 465 ARG B 240 REMARK 465 TRP B 241 REMARK 465 GLN B 242 REMARK 465 GLY B 243 REMARK 465 LEU B 244 REMARK 465 ALA B 245 REMARK 465 LYS B 246 REMARK 465 THR B 247 REMARK 465 GLU B 248 REMARK 465 CYS B 249 REMARK 465 GLY B 250 REMARK 465 LEU B 251 REMARK 465 HIS B 252 REMARK 465 ALA B 253 REMARK 465 SER B 254 REMARK 465 LEU B 255 REMARK 465 GLU B 256 REMARK 465 HIS B 257 REMARK 465 HIS B 258 REMARK 465 HIS B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 34 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 ASP A 42 CG OD1 OD2 REMARK 470 ILE A 43 CG1 CG2 CD1 REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 176 CG CD1 CD2 REMARK 470 GLN A 197 CG CD OE1 NE2 REMARK 470 LEU B 8 CG CD1 CD2 REMARK 470 GLN B 12 CG CD OE1 NE2 REMARK 470 ARG B 19 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 ARG B 34 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 111 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 ARG B 154 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 GLN B 197 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 24 31.10 -96.06 REMARK 500 LEU B 24 33.01 -96.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 140 SG REMARK 620 2 SF4 A 301 S1 106.1 REMARK 620 3 SF4 A 301 S2 121.4 104.1 REMARK 620 4 SF4 A 301 S4 115.1 104.2 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 141 SG REMARK 620 2 SF4 A 301 S1 107.4 REMARK 620 3 SF4 A 301 S3 115.4 104.1 REMARK 620 4 SF4 A 301 S4 119.9 104.2 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 223 SG REMARK 620 2 SF4 A 301 S2 111.7 REMARK 620 3 SF4 A 301 S3 106.8 104.3 REMARK 620 4 SF4 A 301 S4 123.9 104.2 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 226 SG REMARK 620 2 SF4 A 301 S1 117.5 REMARK 620 3 SF4 A 301 S2 119.2 104.0 REMARK 620 4 SF4 A 301 S3 106.0 104.1 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 140 SG REMARK 620 2 SF4 B 301 S1 103.2 REMARK 620 3 SF4 B 301 S2 116.4 104.3 REMARK 620 4 SF4 B 301 S3 122.7 104.1 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 141 SG REMARK 620 2 SF4 B 301 S1 108.4 REMARK 620 3 SF4 B 301 S2 119.5 104.2 REMARK 620 4 SF4 B 301 S4 115.0 104.1 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 223 SG REMARK 620 2 SF4 B 301 S2 123.2 REMARK 620 3 SF4 B 301 S3 113.6 104.1 REMARK 620 4 SF4 B 301 S4 105.7 104.1 104.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 226 SG REMARK 620 2 SF4 B 301 S1 117.5 REMARK 620 3 SF4 B 301 S3 115.8 104.1 REMARK 620 4 SF4 B 301 S4 109.7 104.1 104.2 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7LHR RELATED DB: PDB REMARK 900 HOLO DBREF 7LHS A 1 254 UNP A5U586 CYSH_MYCTA 1 254 DBREF 7LHS B 1 254 UNP A5U586 CYSH_MYCTA 1 254 SEQADV 7LHS LEU A 255 UNP A5U586 EXPRESSION TAG SEQADV 7LHS GLU A 256 UNP A5U586 EXPRESSION TAG SEQADV 7LHS HIS A 257 UNP A5U586 EXPRESSION TAG SEQADV 7LHS HIS A 258 UNP A5U586 EXPRESSION TAG SEQADV 7LHS HIS A 259 UNP A5U586 EXPRESSION TAG SEQADV 7LHS HIS A 260 UNP A5U586 EXPRESSION TAG SEQADV 7LHS HIS A 261 UNP A5U586 EXPRESSION TAG SEQADV 7LHS HIS A 262 UNP A5U586 EXPRESSION TAG SEQADV 7LHS LEU B 255 UNP A5U586 EXPRESSION TAG SEQADV 7LHS GLU B 256 UNP A5U586 EXPRESSION TAG SEQADV 7LHS HIS B 257 UNP A5U586 EXPRESSION TAG SEQADV 7LHS HIS B 258 UNP A5U586 EXPRESSION TAG SEQADV 7LHS HIS B 259 UNP A5U586 EXPRESSION TAG SEQADV 7LHS HIS B 260 UNP A5U586 EXPRESSION TAG SEQADV 7LHS HIS B 261 UNP A5U586 EXPRESSION TAG SEQADV 7LHS HIS B 262 UNP A5U586 EXPRESSION TAG SEQRES 1 A 262 MET SER GLY GLU THR THR ARG LEU THR GLU PRO GLN LEU SEQRES 2 A 262 ARG GLU LEU ALA ALA ARG GLY ALA ALA GLU LEU ASP GLY SEQRES 3 A 262 ALA THR ALA THR ASP MET LEU ARG TRP THR ASP GLU THR SEQRES 4 A 262 PHE GLY ASP ILE GLY GLY ALA GLY GLY GLY VAL SER GLY SEQRES 5 A 262 HIS ARG GLY TRP THR THR CYS ASN TYR VAL VAL ALA SER SEQRES 6 A 262 ASN MET ALA ASP ALA VAL LEU VAL ASP LEU ALA ALA LYS SEQRES 7 A 262 VAL ARG PRO GLY VAL PRO VAL ILE PHE LEU ASP THR GLY SEQRES 8 A 262 TYR HIS PHE VAL GLU THR ILE GLY THR ARG ASP ALA ILE SEQRES 9 A 262 GLU SER VAL TYR ASP VAL ARG VAL LEU ASN VAL THR PRO SEQRES 10 A 262 GLU HIS THR VAL ALA GLU GLN ASP GLU LEU LEU GLY LYS SEQRES 11 A 262 ASP LEU PHE ALA ARG ASN PRO HIS GLU CYS CYS ARG LEU SEQRES 12 A 262 ARG LYS VAL VAL PRO LEU GLY LYS THR LEU ARG GLY TYR SEQRES 13 A 262 SER ALA TRP VAL THR GLY LEU ARG ARG VAL ASP ALA PRO SEQRES 14 A 262 THR ARG ALA ASN ALA PRO LEU VAL SER PHE ASP GLU THR SEQRES 15 A 262 PHE LYS LEU VAL LYS VAL ASN PRO LEU ALA ALA TRP THR SEQRES 16 A 262 ASP GLN ASP VAL GLN GLU TYR ILE ALA ASP ASN ASP VAL SEQRES 17 A 262 LEU VAL ASN PRO LEU VAL ARG GLU GLY TYR PRO SER ILE SEQRES 18 A 262 GLY CYS ALA PRO CYS THR ALA LYS PRO ALA GLU GLY ALA SEQRES 19 A 262 ASP PRO ARG SER GLY ARG TRP GLN GLY LEU ALA LYS THR SEQRES 20 A 262 GLU CYS GLY LEU HIS ALA SER LEU GLU HIS HIS HIS HIS SEQRES 21 A 262 HIS HIS SEQRES 1 B 262 MET SER GLY GLU THR THR ARG LEU THR GLU PRO GLN LEU SEQRES 2 B 262 ARG GLU LEU ALA ALA ARG GLY ALA ALA GLU LEU ASP GLY SEQRES 3 B 262 ALA THR ALA THR ASP MET LEU ARG TRP THR ASP GLU THR SEQRES 4 B 262 PHE GLY ASP ILE GLY GLY ALA GLY GLY GLY VAL SER GLY SEQRES 5 B 262 HIS ARG GLY TRP THR THR CYS ASN TYR VAL VAL ALA SER SEQRES 6 B 262 ASN MET ALA ASP ALA VAL LEU VAL ASP LEU ALA ALA LYS SEQRES 7 B 262 VAL ARG PRO GLY VAL PRO VAL ILE PHE LEU ASP THR GLY SEQRES 8 B 262 TYR HIS PHE VAL GLU THR ILE GLY THR ARG ASP ALA ILE SEQRES 9 B 262 GLU SER VAL TYR ASP VAL ARG VAL LEU ASN VAL THR PRO SEQRES 10 B 262 GLU HIS THR VAL ALA GLU GLN ASP GLU LEU LEU GLY LYS SEQRES 11 B 262 ASP LEU PHE ALA ARG ASN PRO HIS GLU CYS CYS ARG LEU SEQRES 12 B 262 ARG LYS VAL VAL PRO LEU GLY LYS THR LEU ARG GLY TYR SEQRES 13 B 262 SER ALA TRP VAL THR GLY LEU ARG ARG VAL ASP ALA PRO SEQRES 14 B 262 THR ARG ALA ASN ALA PRO LEU VAL SER PHE ASP GLU THR SEQRES 15 B 262 PHE LYS LEU VAL LYS VAL ASN PRO LEU ALA ALA TRP THR SEQRES 16 B 262 ASP GLN ASP VAL GLN GLU TYR ILE ALA ASP ASN ASP VAL SEQRES 17 B 262 LEU VAL ASN PRO LEU VAL ARG GLU GLY TYR PRO SER ILE SEQRES 18 B 262 GLY CYS ALA PRO CYS THR ALA LYS PRO ALA GLU GLY ALA SEQRES 19 B 262 ASP PRO ARG SER GLY ARG TRP GLN GLY LEU ALA LYS THR SEQRES 20 B 262 GLU CYS GLY LEU HIS ALA SER LEU GLU HIS HIS HIS HIS SEQRES 21 B 262 HIS HIS HET SF4 A 301 8 HET MES A 302 12 HET ADX A 303 27 HET SF4 B 301 8 HET MES B 302 12 HET ADX B 303 27 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM ADX ADENOSINE-5'-PHOSPHOSULFATE FORMUL 3 SF4 2(FE4 S4) FORMUL 4 MES 2(C6 H13 N O4 S) FORMUL 5 ADX 2(C10 H14 N5 O10 P S) FORMUL 9 HOH *6(H2 O) HELIX 1 AA1 THR A 9 LEU A 24 1 16 HELIX 2 AA2 THR A 28 PHE A 40 1 13 HELIX 3 AA3 ALA A 70 ARG A 80 1 11 HELIX 4 AA4 PHE A 94 TYR A 108 1 15 HELIX 5 AA5 THR A 120 GLY A 129 1 10 HELIX 6 AA6 ASP A 131 ASN A 136 1 6 HELIX 7 AA7 ASN A 136 LYS A 145 1 10 HELIX 8 AA8 LYS A 145 ARG A 154 1 10 HELIX 9 AA9 ALA A 168 ALA A 172 5 5 HELIX 10 AB1 THR A 195 ASP A 207 1 13 HELIX 11 AB2 ASN A 211 GLU A 216 1 6 HELIX 12 AB3 CYS A 223 THR A 227 5 5 HELIX 13 AB4 THR B 9 LEU B 24 1 16 HELIX 14 AB5 THR B 28 PHE B 40 1 13 HELIX 15 AB6 ALA B 70 ARG B 80 1 11 HELIX 16 AB7 PHE B 94 TYR B 108 1 15 HELIX 17 AB8 THR B 120 GLY B 129 1 10 HELIX 18 AB9 ASP B 131 ASN B 136 1 6 HELIX 19 AC1 ASN B 136 LYS B 145 1 10 HELIX 20 AC2 LYS B 145 ARG B 154 1 10 HELIX 21 AC3 ALA B 168 ALA B 172 5 5 HELIX 22 AC4 THR B 195 ASP B 207 1 13 HELIX 23 AC5 ASN B 211 GLU B 216 1 6 HELIX 24 AC6 CYS B 223 THR B 227 5 5 SHEET 1 AA1 6 VAL A 110 VAL A 115 0 SHEET 2 AA1 6 VAL A 83 LEU A 88 1 N PHE A 87 O LEU A 113 SHEET 3 AA1 6 TYR A 61 ALA A 64 1 N VAL A 63 O ILE A 86 SHEET 4 AA1 6 ALA A 158 VAL A 160 1 O VAL A 160 N VAL A 62 SHEET 5 AA1 6 LEU A 185 VAL A 188 1 O VAL A 186 N TRP A 159 SHEET 6 AA1 6 VAL A 177 ASP A 180 -1 N SER A 178 O LYS A 187 SHEET 1 AA2 6 VAL B 110 VAL B 115 0 SHEET 2 AA2 6 VAL B 83 LEU B 88 1 N PHE B 87 O LEU B 113 SHEET 3 AA2 6 TYR B 61 ALA B 64 1 N VAL B 63 O ILE B 86 SHEET 4 AA2 6 ALA B 158 VAL B 160 1 O VAL B 160 N ALA B 64 SHEET 5 AA2 6 LEU B 185 VAL B 188 1 O VAL B 186 N TRP B 159 SHEET 6 AA2 6 VAL B 177 ASP B 180 -1 N SER B 178 O LYS B 187 LINK SG CYS A 140 FE3 SF4 A 301 1555 1555 2.27 LINK SG CYS A 141 FE2 SF4 A 301 1555 1555 2.27 LINK SG CYS A 223 FE1 SF4 A 301 1555 1555 2.27 LINK SG CYS A 226 FE4 SF4 A 301 1555 1555 2.27 LINK SG CYS B 140 FE4 SF4 B 301 1555 1555 2.27 LINK SG CYS B 141 FE3 SF4 B 301 1555 1555 2.27 LINK SG CYS B 223 FE1 SF4 B 301 1555 1555 2.27 LINK SG CYS B 226 FE2 SF4 B 301 1555 1555 2.27 CRYST1 77.502 77.502 205.310 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012903 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012903 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004871 0.00000