data_7LIJ # _entry.id 7LIJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7LIJ pdb_00007lij 10.2210/pdb7lij/pdb WWPDB D_1000254434 ? ? EMDB EMD-23380 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-23380 'associated EM volume' EMDB . EMD-23379 'other EM volume' EMDB . EMD-23381 'other EM volume' EMDB . EMD-23382 'other EM volume' EMDB . EMD-23383 'other EM volume' EMDB . EMD-23384 'other EM volume' EMDB . EMD-23385 'other EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7LIJ _pdbx_database_status.recvd_initial_deposition_date 2021-01-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Andreas, M.P.' 1 ? 'Adamson, L.' 2 ? 'Tasneem, N.' 3 ? 'Close, W.' 4 ? 'Giessen, T.' 5 0000-0001-6328-2031 'Lau, Y.H.' 6 0000-0001-6560-8410 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2375-2548 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first eabl7346 _citation.page_last eabl7346 _citation.title 'Pore structure controls stability and molecular flux in engineered protein cages.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/sciadv.abl7346 _citation.pdbx_database_id_PubMed 35119930 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Adamson, L.S.R.' 1 0000-0002-9862-9557 primary 'Tasneem, N.' 2 0000-0002-1125-7149 primary 'Andreas, M.P.' 3 0000-0001-8871-3053 primary 'Close, W.' 4 0000-0002-1481-7068 primary 'Jenner, E.N.' 5 0000-0003-2696-2534 primary 'Szyszka, T.N.' 6 0000-0002-9921-3086 primary 'Young, R.' 7 ? primary 'Cheah, L.C.' 8 0000-0002-0072-2885 primary 'Norman, A.' 9 ? primary 'MacDermott-Opeskin, H.I.' 10 0000-0002-7393-7457 primary ;O'Mara, M.L. ; 11 0000-0002-8764-1585 primary 'Sainsbury, F.' 12 0000-0001-8152-3820 primary 'Giessen, T.W.' 13 0000-0001-6328-2031 primary 'Lau, Y.H.' 14 0000-0001-6560-8410 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7LIJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Maritimacin 30507.818 1 3.4.-.- H187K ? ? 2 non-polymer syn RIBOFLAVIN 376.364 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Thermotoga bacteriocin, Encapsulin Nanocompartment Pore' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MEFLKRSFAPLTEKQWQEIDNRAREIFKTQLYGRKFVDVEGPYGWEYAAHPLGEVEVLSDENEVVKWGLRKSLPLIELRA TFTLDLWELDNLERGKPNVDLSSLEETVRKVAEFEDEVIFRGCEKSGVKGLLSFEERKIECGSTPKDLLEAIVRALSIFS KDGIEGPYTLVINTDRWINFLKEEAGKYPLEKRVEECLRGGKIITTPRIEDALVVSERGGDFKLILGQDLSIGYEDREKD AVRLFITETFTFQVVNPEALILLKF ; _entity_poly.pdbx_seq_one_letter_code_can ;MEFLKRSFAPLTEKQWQEIDNRAREIFKTQLYGRKFVDVEGPYGWEYAAHPLGEVEVLSDENEVVKWGLRKSLPLIELRA TFTLDLWELDNLERGKPNVDLSSLEETVRKVAEFEDEVIFRGCEKSGVKGLLSFEERKIECGSTPKDLLEAIVRALSIFS KDGIEGPYTLVINTDRWINFLKEEAGKYPLEKRVEECLRGGKIITTPRIEDALVVSERGGDFKLILGQDLSIGYEDREKD AVRLFITETFTFQVVNPEALILLKF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 PHE n 1 4 LEU n 1 5 LYS n 1 6 ARG n 1 7 SER n 1 8 PHE n 1 9 ALA n 1 10 PRO n 1 11 LEU n 1 12 THR n 1 13 GLU n 1 14 LYS n 1 15 GLN n 1 16 TRP n 1 17 GLN n 1 18 GLU n 1 19 ILE n 1 20 ASP n 1 21 ASN n 1 22 ARG n 1 23 ALA n 1 24 ARG n 1 25 GLU n 1 26 ILE n 1 27 PHE n 1 28 LYS n 1 29 THR n 1 30 GLN n 1 31 LEU n 1 32 TYR n 1 33 GLY n 1 34 ARG n 1 35 LYS n 1 36 PHE n 1 37 VAL n 1 38 ASP n 1 39 VAL n 1 40 GLU n 1 41 GLY n 1 42 PRO n 1 43 TYR n 1 44 GLY n 1 45 TRP n 1 46 GLU n 1 47 TYR n 1 48 ALA n 1 49 ALA n 1 50 HIS n 1 51 PRO n 1 52 LEU n 1 53 GLY n 1 54 GLU n 1 55 VAL n 1 56 GLU n 1 57 VAL n 1 58 LEU n 1 59 SER n 1 60 ASP n 1 61 GLU n 1 62 ASN n 1 63 GLU n 1 64 VAL n 1 65 VAL n 1 66 LYS n 1 67 TRP n 1 68 GLY n 1 69 LEU n 1 70 ARG n 1 71 LYS n 1 72 SER n 1 73 LEU n 1 74 PRO n 1 75 LEU n 1 76 ILE n 1 77 GLU n 1 78 LEU n 1 79 ARG n 1 80 ALA n 1 81 THR n 1 82 PHE n 1 83 THR n 1 84 LEU n 1 85 ASP n 1 86 LEU n 1 87 TRP n 1 88 GLU n 1 89 LEU n 1 90 ASP n 1 91 ASN n 1 92 LEU n 1 93 GLU n 1 94 ARG n 1 95 GLY n 1 96 LYS n 1 97 PRO n 1 98 ASN n 1 99 VAL n 1 100 ASP n 1 101 LEU n 1 102 SER n 1 103 SER n 1 104 LEU n 1 105 GLU n 1 106 GLU n 1 107 THR n 1 108 VAL n 1 109 ARG n 1 110 LYS n 1 111 VAL n 1 112 ALA n 1 113 GLU n 1 114 PHE n 1 115 GLU n 1 116 ASP n 1 117 GLU n 1 118 VAL n 1 119 ILE n 1 120 PHE n 1 121 ARG n 1 122 GLY n 1 123 CYS n 1 124 GLU n 1 125 LYS n 1 126 SER n 1 127 GLY n 1 128 VAL n 1 129 LYS n 1 130 GLY n 1 131 LEU n 1 132 LEU n 1 133 SER n 1 134 PHE n 1 135 GLU n 1 136 GLU n 1 137 ARG n 1 138 LYS n 1 139 ILE n 1 140 GLU n 1 141 CYS n 1 142 GLY n 1 143 SER n 1 144 THR n 1 145 PRO n 1 146 LYS n 1 147 ASP n 1 148 LEU n 1 149 LEU n 1 150 GLU n 1 151 ALA n 1 152 ILE n 1 153 VAL n 1 154 ARG n 1 155 ALA n 1 156 LEU n 1 157 SER n 1 158 ILE n 1 159 PHE n 1 160 SER n 1 161 LYS n 1 162 ASP n 1 163 GLY n 1 164 ILE n 1 165 GLU n 1 166 GLY n 1 167 PRO n 1 168 TYR n 1 169 THR n 1 170 LEU n 1 171 VAL n 1 172 ILE n 1 173 ASN n 1 174 THR n 1 175 ASP n 1 176 ARG n 1 177 TRP n 1 178 ILE n 1 179 ASN n 1 180 PHE n 1 181 LEU n 1 182 LYS n 1 183 GLU n 1 184 GLU n 1 185 ALA n 1 186 GLY n 1 187 LYS n 1 188 TYR n 1 189 PRO n 1 190 LEU n 1 191 GLU n 1 192 LYS n 1 193 ARG n 1 194 VAL n 1 195 GLU n 1 196 GLU n 1 197 CYS n 1 198 LEU n 1 199 ARG n 1 200 GLY n 1 201 GLY n 1 202 LYS n 1 203 ILE n 1 204 ILE n 1 205 THR n 1 206 THR n 1 207 PRO n 1 208 ARG n 1 209 ILE n 1 210 GLU n 1 211 ASP n 1 212 ALA n 1 213 LEU n 1 214 VAL n 1 215 VAL n 1 216 SER n 1 217 GLU n 1 218 ARG n 1 219 GLY n 1 220 GLY n 1 221 ASP n 1 222 PHE n 1 223 LYS n 1 224 LEU n 1 225 ILE n 1 226 LEU n 1 227 GLY n 1 228 GLN n 1 229 ASP n 1 230 LEU n 1 231 SER n 1 232 ILE n 1 233 GLY n 1 234 TYR n 1 235 GLU n 1 236 ASP n 1 237 ARG n 1 238 GLU n 1 239 LYS n 1 240 ASP n 1 241 ALA n 1 242 VAL n 1 243 ARG n 1 244 LEU n 1 245 PHE n 1 246 ILE n 1 247 THR n 1 248 GLU n 1 249 THR n 1 250 PHE n 1 251 THR n 1 252 PHE n 1 253 GLN n 1 254 VAL n 1 255 VAL n 1 256 ASN n 1 257 PRO n 1 258 GLU n 1 259 ALA n 1 260 LEU n 1 261 ILE n 1 262 LEU n 1 263 LEU n 1 264 LYS n 1 265 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 265 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TM_0785 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 43589 / MSB8 / DSM 3109 / JCM 10099' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MARIT_THEMA _struct_ref.pdbx_db_accession Q9WZP2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEFLKRSFAPLTEKQWQEIDNRAREIFKTQLYGRKFVDVEGPYGWEYAAHPLGEVEVLSDENEVVKWGLRKSLPLIELRA TFTLDLWELDNLERGKPNVDLSSLEETVRKVAEFEDEVIFRGCEKSGVKGLLSFEERKIECGSTPKDLLEAIVRALSIFS KDGIEGPYTLVINTDRWINFLKEEAGHYPLEKRVEECLRGGKIITTPRIEDALVVSERGGDFKLILGQDLSIGYEDREKD AVRLFITETFTFQVVNPEALILLKF ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7LIJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 265 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9WZP2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 265 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 265 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 7LIJ _struct_ref_seq_dif.mon_id LYS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 187 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q9WZP2 _struct_ref_seq_dif.db_mon_id HIS _struct_ref_seq_dif.pdbx_seq_db_seq_num 187 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 187 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RBF non-polymer . RIBOFLAVIN 'RIBOFLAVINE; VITAMIN B2' 'C17 H20 N4 O6' 376.364 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7LIJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7LIJ _struct.title 'Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S1K' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7LIJ _struct_keywords.text 'Encapsulin, Nanocompartment, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 5 ? ALA A 9 ? LYS A 5 ALA A 9 5 ? 5 HELX_P HELX_P2 AA2 THR A 12 ? LEU A 31 ? THR A 12 LEU A 31 1 ? 20 HELX_P HELX_P3 AA3 TYR A 32 ? PHE A 36 ? TYR A 32 PHE A 36 5 ? 5 HELX_P HELX_P4 AA4 LEU A 86 ? ASP A 90 ? LEU A 86 ASP A 90 1 ? 5 HELX_P HELX_P5 AA5 ASN A 91 ? ARG A 94 ? ASN A 91 ARG A 94 5 ? 4 HELX_P HELX_P6 AA6 LEU A 101 ? GLY A 122 ? LEU A 101 GLY A 122 1 ? 22 HELX_P HELX_P7 AA7 GLY A 130 ? PHE A 134 ? GLY A 130 PHE A 134 5 ? 5 HELX_P HELX_P8 AA8 THR A 144 ? LYS A 161 ? THR A 144 LYS A 161 1 ? 18 HELX_P HELX_P9 AA9 THR A 174 ? GLU A 184 ? THR A 174 GLU A 184 1 ? 11 HELX_P HELX_P10 AB1 PRO A 189 ? LEU A 198 ? PRO A 189 LEU A 198 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 38 ? GLU A 40 ? ASP A 38 GLU A 40 AA1 2 PHE A 222 ? ARG A 237 ? PHE A 222 ARG A 237 AA1 3 ALA A 241 ? VAL A 254 ? ALA A 241 VAL A 254 AA1 4 ILE A 76 ? ASP A 85 ? ILE A 76 ASP A 85 AA2 1 ALA A 49 ? VAL A 57 ? ALA A 49 VAL A 57 AA2 2 GLY A 68 ? PRO A 74 ? GLY A 68 PRO A 74 AA3 1 LYS A 138 ? GLU A 140 ? LYS A 138 GLU A 140 AA3 2 LEU A 260 ? LYS A 264 ? LEU A 260 LYS A 264 AA3 3 ALA A 212 ? SER A 216 ? ALA A 212 SER A 216 AA3 4 TYR A 168 ? ILE A 172 ? TYR A 168 ILE A 172 AA3 5 LYS A 202 ? THR A 205 ? LYS A 202 THR A 205 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 40 ? N GLU A 40 O LEU A 224 ? O LEU A 224 AA1 2 3 N GLY A 227 ? N GLY A 227 O THR A 249 ? O THR A 249 AA1 3 4 O LEU A 244 ? O LEU A 244 N PHE A 82 ? N PHE A 82 AA2 1 2 N HIS A 50 ? N HIS A 50 O LEU A 73 ? O LEU A 73 AA3 1 2 N ILE A 139 ? N ILE A 139 O LYS A 264 ? O LYS A 264 AA3 2 3 O LEU A 263 ? O LEU A 263 N ALA A 212 ? N ALA A 212 AA3 3 4 O LEU A 213 ? O LEU A 213 N VAL A 171 ? N VAL A 171 AA3 4 5 N ILE A 172 ? N ILE A 172 O ILE A 204 ? O ILE A 204 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id RBF _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'binding site for residue RBF A 301' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id ASP _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 90 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id ASP _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 90 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _atom_sites.entry_id 7LIJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 TRP 16 16 16 TRP TRP A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 TRP 67 67 67 TRP TRP A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 TRP 87 87 87 TRP TRP A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 CYS 123 123 123 CYS CYS A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 GLU 140 140 140 GLU GLU A . n A 1 141 CYS 141 141 141 CYS CYS A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 THR 144 144 144 THR THR A . n A 1 145 PRO 145 145 145 PRO PRO A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 ASP 147 147 147 ASP ASP A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 ARG 154 154 154 ARG ARG A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 SER 157 157 157 SER SER A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 PHE 159 159 159 PHE PHE A . n A 1 160 SER 160 160 160 SER SER A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 GLY 163 163 163 GLY GLY A . n A 1 164 ILE 164 164 164 ILE ILE A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 GLY 166 166 166 GLY GLY A . n A 1 167 PRO 167 167 167 PRO PRO A . n A 1 168 TYR 168 168 168 TYR TYR A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 ASN 173 173 173 ASN ASN A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 ARG 176 176 176 ARG ARG A . n A 1 177 TRP 177 177 177 TRP TRP A . n A 1 178 ILE 178 178 178 ILE ILE A . n A 1 179 ASN 179 179 179 ASN ASN A . n A 1 180 PHE 180 180 180 PHE PHE A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 LYS 182 182 182 LYS LYS A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 GLY 186 186 186 GLY GLY A . n A 1 187 LYS 187 187 187 LYS LYS A . n A 1 188 TYR 188 188 188 TYR TYR A . n A 1 189 PRO 189 189 189 PRO PRO A . n A 1 190 LEU 190 190 190 LEU LEU A . n A 1 191 GLU 191 191 191 GLU GLU A . n A 1 192 LYS 192 192 192 LYS LYS A . n A 1 193 ARG 193 193 193 ARG ARG A . n A 1 194 VAL 194 194 194 VAL VAL A . n A 1 195 GLU 195 195 195 GLU GLU A . n A 1 196 GLU 196 196 196 GLU GLU A . n A 1 197 CYS 197 197 197 CYS CYS A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 ARG 199 199 199 ARG ARG A . n A 1 200 GLY 200 200 200 GLY GLY A . n A 1 201 GLY 201 201 201 GLY GLY A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 ILE 203 203 203 ILE ILE A . n A 1 204 ILE 204 204 204 ILE ILE A . n A 1 205 THR 205 205 205 THR THR A . n A 1 206 THR 206 206 206 THR THR A . n A 1 207 PRO 207 207 207 PRO PRO A . n A 1 208 ARG 208 208 208 ARG ARG A . n A 1 209 ILE 209 209 209 ILE ILE A . n A 1 210 GLU 210 210 210 GLU GLU A . n A 1 211 ASP 211 211 211 ASP ASP A . n A 1 212 ALA 212 212 212 ALA ALA A . n A 1 213 LEU 213 213 213 LEU LEU A . n A 1 214 VAL 214 214 214 VAL VAL A . n A 1 215 VAL 215 215 215 VAL VAL A . n A 1 216 SER 216 216 216 SER SER A . n A 1 217 GLU 217 217 217 GLU GLU A . n A 1 218 ARG 218 218 218 ARG ARG A . n A 1 219 GLY 219 219 219 GLY GLY A . n A 1 220 GLY 220 220 220 GLY GLY A . n A 1 221 ASP 221 221 221 ASP ASP A . n A 1 222 PHE 222 222 222 PHE PHE A . n A 1 223 LYS 223 223 223 LYS LYS A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 ILE 225 225 225 ILE ILE A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 GLY 227 227 227 GLY GLY A . n A 1 228 GLN 228 228 228 GLN GLN A . n A 1 229 ASP 229 229 229 ASP ASP A . n A 1 230 LEU 230 230 230 LEU LEU A . n A 1 231 SER 231 231 231 SER SER A . n A 1 232 ILE 232 232 232 ILE ILE A . n A 1 233 GLY 233 233 233 GLY GLY A . n A 1 234 TYR 234 234 234 TYR TYR A . n A 1 235 GLU 235 235 235 GLU GLU A . n A 1 236 ASP 236 236 236 ASP ASP A . n A 1 237 ARG 237 237 237 ARG ARG A . n A 1 238 GLU 238 238 238 GLU GLU A . n A 1 239 LYS 239 239 239 LYS LYS A . n A 1 240 ASP 240 240 240 ASP ASP A . n A 1 241 ALA 241 241 241 ALA ALA A . n A 1 242 VAL 242 242 242 VAL VAL A . n A 1 243 ARG 243 243 243 ARG ARG A . n A 1 244 LEU 244 244 244 LEU LEU A . n A 1 245 PHE 245 245 245 PHE PHE A . n A 1 246 ILE 246 246 246 ILE ILE A . n A 1 247 THR 247 247 247 THR THR A . n A 1 248 GLU 248 248 248 GLU GLU A . n A 1 249 THR 249 249 249 THR THR A . n A 1 250 PHE 250 250 250 PHE PHE A . n A 1 251 THR 251 251 251 THR THR A . n A 1 252 PHE 252 252 252 PHE PHE A . n A 1 253 GLN 253 253 253 GLN GLN A . n A 1 254 VAL 254 254 254 VAL VAL A . n A 1 255 VAL 255 255 255 VAL VAL A . n A 1 256 ASN 256 256 256 ASN ASN A . n A 1 257 PRO 257 257 257 PRO PRO A . n A 1 258 GLU 258 258 258 GLU GLU A . n A 1 259 ALA 259 259 259 ALA ALA A . n A 1 260 LEU 260 260 260 LEU LEU A . n A 1 261 ILE 261 261 261 ILE ILE A . n A 1 262 LEU 262 262 262 LEU LEU A . n A 1 263 LEU 263 263 263 LEU LEU A . n A 1 264 LYS 264 264 264 LYS LYS A . n A 1 265 PHE 265 265 265 PHE PHE A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id RBF _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 298 _pdbx_nonpoly_scheme.pdb_mon_id RBF _pdbx_nonpoly_scheme.auth_mon_id RBF _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 60-meric 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B 2 1 A,B 3 '(1-5)' A,B 4 '(1,2,6,10,23,24)' A,B 5 P A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.50000026 0.30901855 0.80901624 -116.28959 -0.30901549 0.80901686 -0.50000115 -0.00032 -0.80901741 -0.49999925 -0.30901712 304.44917 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.80901648 0.50000034 0.30901779 -116.28957 -0.50000101 0.30901699 0.80901638 71.87108 0.30901671 -0.80901678 0.50000052 188.16021 3 'point symmetry operation' ? ? 0.49999865 0.30901654 0.80901800 -116.28934 -0.30901828 -0.80901700 0.49999921 304.45005 0.80901733 -0.50000028 -0.30901564 188.16008 4 'point symmetry operation' ? ? 0.49999865 -0.30901828 0.80901734 0.00038 0.30901654 -0.80901699 -0.50000028 376.32069 0.80901800 0.49999920 -0.30901565 -0.00021 5 'point symmetry operation' ? ? 0.80901648 -0.50000101 0.30901672 71.87114 0.50000034 0.30901700 -0.80901679 188.16021 0.30901779 0.80901637 0.50000051 -116.28953 6 'point symmetry operation' ? ? 0.30901833 0.80901619 0.50000046 -116.28985 0.80901620 -0.50000150 0.30901666 71.87180 0.50000046 0.30901666 -0.80901684 188.16001 7 'point symmetry operation' ? ? 0.00000051 0.00000026 1.00000000 -0.00040 1.00000000 -0.00000024 -0.00000051 0.00064 0.00000025 0.99999999 -0.00000027 -0.00024 8 'point symmetry operation' ? ? 0.30901699 -0.80901645 0.50000089 188.15976 0.80901645 0.50000068 0.30901734 -116.28904 -0.50000089 0.30901733 0.80901632 71.87076 9 'point symmetry operation' ? ? 0.80901751 -0.50000033 -0.30901510 188.15970 0.49999831 0.30901699 0.80901804 -116.28886 -0.30901837 -0.80901678 0.49999949 304.44973 10 'point symmetry operation' ? ? 0.80901834 0.49999883 -0.30901537 -0.00051 0.49999816 -0.30901834 0.80901762 0.00093 0.30901645 -0.80901720 -0.49999999 376.32044 11 'point symmetry operation' ? ? -0.80901885 -0.49999748 0.30901620 376.31971 -0.49999748 0.30901656 -0.80901872 376.32000 0.30901620 -0.80901871 -0.49999771 376.32034 12 'point symmetry operation' ? ? -0.30901917 -0.80901671 -0.49999911 492.60936 -0.80901510 0.50000218 -0.30901844 304.44872 0.50000172 0.30901421 -0.80901700 188.16027 13 'point symmetry operation' ? ? -0.00000051 -0.00000193 -1.00000000 376.32023 -1.00000000 0.00000244 0.00000051 376.31946 0.00000244 0.99999999 -0.00000193 -0.00034 14 'point symmetry operation' ? ? -0.30901616 0.80901593 -0.50000224 188.15994 -0.80901755 -0.50000000 -0.30901556 492.60930 -0.49999963 0.30901977 0.80901616 71.87009 15 'point symmetry operation' ? ? -0.80901699 0.50000168 0.30901427 188.15962 -0.49999900 -0.30901877 -0.80901694 492.60964 -0.30901863 -0.80901527 0.50000178 304.44906 16 'point symmetry operation' ? ? -0.49999948 -0.30901871 -0.80901666 492.60916 -0.30901872 -0.80901507 0.50000206 304.44923 -0.80901666 0.50000205 0.30901455 188.15969 17 'point symmetry operation' ? ? -0.49999782 0.30901611 -0.80901868 376.31964 0.30901611 -0.80901892 -0.49999743 376.32059 -0.80901868 -0.49999743 0.30901674 376.31982 18 'point symmetry operation' ? ? -0.80901514 0.50000184 -0.30901889 304.44837 0.50000184 0.30901388 -0.80901706 188.16056 -0.30901889 -0.80901704 -0.49999874 492.60955 19 'point symmetry operation' ? ? -1.00000000 0.00000269 0.00000000 376.31900 0.00000269 1.00000000 -0.00000220 -0.00009 0.00000000 -0.00000219 -1.00000000 376.32044 20 'point symmetry operation' ? ? -0.80901782 -0.49999951 -0.30901562 492.60877 -0.49999951 0.30902011 0.80901611 71.87026 -0.30901562 0.80901610 -0.50000229 188.16007 21 'point symmetry operation' ? ? 0.80901565 -0.50000049 0.30901972 71.87063 -0.50000252 -0.30901566 0.80901596 188.16062 -0.30901644 -0.80901720 -0.49999999 492.60936 22 'point symmetry operation' ? ? 1.00000000 -0.00000269 0.00000167 0.00019 -0.00000269 -1.00000000 0.00000000 376.32102 0.00000167 0.00000000 -1.00000000 376.31971 23 'point symmetry operation' ? ? 0.80901834 0.49999816 0.30901645 -116.28926 0.49999883 -0.30901833 -0.80901721 304.45026 -0.30901536 0.80901761 -0.50000001 188.15931 24 'point symmetry operation' ? ? 0.50000083 0.30901788 0.80901614 -116.28965 0.30901694 0.80901617 -0.50000138 71.87128 -0.80901650 0.50000079 0.30901699 188.15944 25 'point symmetry operation' ? ? 0.49999917 -0.30901528 0.80901817 -0.00044 -0.30901789 0.80901782 0.49999811 0.00034 -0.80901717 -0.49999971 0.30901700 376.31992 26 'point symmetry operation' ? ? 0.00000218 1.00000000 -0.00000244 -0.00045 -0.00000027 -0.00000244 -1.00000001 376.32078 -1.00000000 0.00000218 0.00000026 376.31931 27 'point symmetry operation' ? ? -0.50000000 0.30902005 0.80901583 71.86991 -0.30901571 0.80901590 -0.50000258 188.16043 -0.80901749 -0.49999988 -0.30901590 492.60908 28 'point symmetry operation' ? ? -0.30901917 -0.80901510 0.50000172 304.44888 -0.80901672 0.50000217 0.30901421 188.15999 -0.49999911 -0.30901843 -0.80901699 492.60936 29 'point symmetry operation' ? ? 0.30901565 -0.80901888 -0.49999776 376.32023 -0.80901889 -0.49999715 0.30901665 376.32007 -0.49999777 0.30901665 -0.80901851 376.31975 30 'point symmetry operation' ? ? 0.50000135 0.30901393 -0.80901733 188.16019 -0.30901923 -0.80901699 -0.49999862 492.60983 -0.80901531 0.50000189 -0.30901835 304.44855 31 'point symmetry operation' ? ? -0.30901783 -0.80901696 0.49999954 304.44939 0.80901755 -0.50000000 -0.30901555 188.16021 0.49999860 0.30901708 0.80901783 -116.28914 32 'point symmetry operation' ? ? 0.30901699 -0.80901702 -0.49999994 376.32004 0.80901806 0.49999932 -0.30901531 -0.00006 0.49999828 -0.30901800 0.80901767 0.00059 33 'point symmetry operation' ? ? 0.50000083 0.30901694 -0.80901651 188.15957 0.30901788 0.80901616 0.50000080 -116.28932 0.80901614 -0.50000137 0.30901700 71.87148 34 'point symmetry operation' ? ? 0.00000051 1.00000000 0.00000024 -0.00064 0.00000027 -0.00000025 1.00000001 0.00024 1.00000000 -0.00000051 -0.00000026 0.00040 35 'point symmetry operation' ? ? -0.50000052 0.30901705 0.80901665 71.87042 0.30901705 -0.80901673 0.50000040 188.16040 0.80901665 0.50000039 0.30901725 -116.28925 36 'point symmetry operation' ? ? -0.50000000 0.30901745 -0.80901682 376.31944 -0.30901476 0.80901809 0.49999960 -0.00058 0.80901784 0.49999794 -0.30901809 0.00052 37 'point symmetry operation' ? ? -0.80901699 0.49999966 -0.30901755 304.44887 -0.49999966 -0.30901522 0.80901789 188.15964 0.30901754 0.80901788 0.49999822 -116.28934 38 'point symmetry operation' ? ? -1.00000000 0.00000000 -0.00000167 376.31982 0.00000000 -1.00000000 0.00000220 376.32010 -0.00000167 0.00000219 1.00000000 -0.00010 39 'point symmetry operation' ? ? -0.80901700 -0.49999899 -0.30901862 492.60908 0.50000169 -0.30901877 -0.80901528 304.44944 0.30901427 -0.80901694 0.50000178 188.16046 40 'point symmetry operation' ? ? -0.50000000 -0.30901570 -0.80901749 492.60885 0.30902006 0.80901590 -0.49999989 71.87046 0.80901582 -0.50000256 -0.30901590 188.16084 41 'point symmetry operation' ? ? 0.80901565 -0.50000251 -0.30901644 188.16071 -0.50000049 -0.30901565 -0.80901721 492.60938 0.30901972 0.80901595 -0.50000001 71.87030 42 'point symmetry operation' ? ? 0.80901751 0.49999831 -0.30901837 0.00031 -0.50000034 0.30901700 -0.80901679 376.32009 -0.30901510 0.80901803 0.49999948 -0.00073 43 'point symmetry operation' ? ? 0.30901700 0.80901805 0.49999828 -116.28954 -0.80901703 0.49999932 -0.30901800 304.44953 -0.49999995 -0.30901531 0.80901767 188.15950 44 'point symmetry operation' ? ? -0.00000218 0.00000193 1.00000000 -0.00021 -1.00000000 0.00000024 -0.00000218 376.32038 -0.00000025 -0.99999999 0.00000193 376.31995 45 'point symmetry operation' ? ? 0.30901399 -0.80901727 0.50000141 188.16039 -0.80901728 -0.49999850 -0.30901868 492.60956 0.50000140 -0.30901868 -0.80901548 304.44927 46 'point symmetry operation' ? ? -0.30901783 0.80901754 0.49999859 -0.00022 -0.80901696 -0.50000000 0.30901709 376.32016 0.49999954 -0.30901556 0.80901783 -0.00014 47 'point symmetry operation' ? ? -0.50000218 -0.30901611 0.80901599 188.16013 -0.30901610 -0.80901726 -0.50000012 492.60958 0.80901598 -0.50000012 0.30901944 71.87081 48 'point symmetry operation' ? ? -0.00000218 -1.00000000 -0.00000024 376.32047 0.00000193 0.00000025 -1.00000001 376.31986 1.00000000 -0.00000218 0.00000193 0.00031 49 'point symmetry operation' ? ? 0.49999917 -0.30901788 -0.80901717 304.44960 -0.30901527 0.80901783 -0.49999972 188.15945 0.80901816 0.49999811 0.30901699 -116.28906 50 'point symmetry operation' ? ? 0.30901700 0.80901644 -0.50000089 71.87062 -0.80901645 0.50000068 0.30901733 188.15963 0.50000088 0.30901733 0.80901632 -116.28933 51 'point symmetry operation' ? ? -0.50000000 -0.30901477 0.80901785 188.15912 0.30901745 0.80901809 0.49999794 -116.28906 -0.80901682 0.49999960 -0.30901809 304.44921 52 'point symmetry operation' ? ? -0.00000051 -1.00000000 0.00000244 376.31965 -0.00000193 0.00000244 1.00000001 0.00015 -1.00000000 0.00000051 -0.00000193 376.32003 53 'point symmetry operation' ? ? 0.50000135 -0.30901922 -0.80901531 304.44909 0.30901393 -0.80901700 0.50000190 188.16076 -0.80901733 -0.49999862 -0.30901834 492.60928 54 'point symmetry operation' ? ? 0.30902000 0.80901562 -0.50000037 71.87012 0.80901562 -0.50000285 -0.30901599 188.16120 -0.50000037 -0.30901598 -0.80901715 492.60916 55 'point symmetry operation' ? ? -0.30901482 0.80901837 0.49999911 -0.00104 0.80901779 0.49999783 -0.30901843 0.00086 -0.50000005 0.30901691 -0.80901700 376.31985 56 'point symmetry operation' ? ? 0.00000218 -0.00000026 -1.00000000 376.31941 1.00000000 -0.00000244 0.00000218 0.00055 -0.00000244 -0.99999999 0.00000027 376.32068 57 'point symmetry operation' ? ? -0.30901482 0.80901779 -0.50000006 188.15893 0.80901838 0.49999782 0.30901690 -116.28878 0.49999912 -0.30901842 -0.80901699 304.44994 58 'point symmetry operation' ? ? -0.80901617 0.50000116 0.30901727 188.15900 0.50000117 0.30901743 0.80901611 -116.28912 0.30901728 0.80901611 -0.50000126 71.87096 59 'point symmetry operation' ? ? -0.80901700 -0.49999966 0.30901754 376.31951 0.49999966 -0.30901522 0.80901789 0.00001 -0.30901754 0.80901787 0.49999822 0.00000 60 'point symmetry operation' ? ? -0.30901616 -0.80901754 -0.49999963 492.60904 0.80901593 -0.50000000 0.30901978 71.87098 -0.50000223 -0.30901556 0.80901616 188.16027 # _pdbx_point_symmetry.entry_id 7LIJ _pdbx_point_symmetry.Schoenflies_symbol I # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-09 2 'Structure model' 1 1 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _pdbx_entry_details.entry_id 7LIJ _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7LIJ _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 22.03 _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range 1-265 _em_3d_fitting_list.pdb_entry_id 3DKT # _em_3d_reconstruction.entry_id 7LIJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 58162 _em_3d_reconstruction.resolution 2.84 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Thermotoga maratima encapsulin pore mutant with H187K mutation' _em_entity_assembly.name 'Thermotoga maratima Pore Mutant S1K' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 7LIJ _em_image_scans.id 1 _em_image_scans.dimension_height 3710 _em_image_scans.dimension_width 3838 _em_image_scans.frames_per_image 40 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 7LIJ _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 70 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'TFS GLACIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max -1800 _em_imaging.nominal_defocus_min -1300 _em_imaging.nominal_magnification 45000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details '60 seconds at 5 mA' _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 295 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'blot 4 seconds, force 20 immediately prior to plunging into ethane' _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7LIJ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7LIJ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7LIJ _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 36 ? ? -141.93 27.42 2 1 LEU A 101 ? ? -140.26 46.61 3 1 ASN A 173 ? ? -67.46 -179.75 4 1 LYS A 187 ? ? -127.13 -167.63 5 1 ASP A 240 ? ? -141.78 31.37 6 1 VAL A 255 ? ? -98.86 -60.33 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 150 mM NaCl 'Sodium Chloride' 1 2 25 mM C4H11NO3 Tris # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 1.850714 # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 243274 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Thermotoga maritima MSB8' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 62 _em_image_recording.average_exposure_time 8 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? cryoSPARC 2.15.0 1 ? ? 2 'IMAGE ACQUISITION' ? Leginon ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? cryoSPARC 2.15.0 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 8 'MODEL FITTING' ? Coot 0.9 ? 1 ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? cryoSPARC 2.15.0 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? cryoSPARC 2.15.0 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? cryoSPARC 2.15.0 1 ? ? 14 'MODEL REFINEMENT' ? PHENIX 1.18.2-3874-000 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 2.0 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Australian Research Council (ARC)' Australia DE190100624 1 'Other private' Australia WRF2020 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM133325 3 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name RIBOFLAVIN _pdbx_entity_nonpoly.comp_id RBF # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 'light scattering' ? 3 1 microscopy ? #