HEADER SIGNALING PROTEIN 27-JAN-21 7LIR TITLE STRUCTURE OF THE INVERTEBRATE ALK GRD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALK TYROSINE KINASE RECEPTOR HOMOLOG SCD-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SUPPRESSOR OF CONSTITUTIVE DAUER FORMATION PROTEIN 2; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: SCD-2, T10H9.2; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS ALK, ANAPLASTIC LYMPHOMA KINASE, GRD, GLYCINE RICH DOMAIN, POLE, KEYWDS 2 POLY-GLYCINE EXTENSION, PXL, POLY-GLYCINE EXTENSION LOOPS, KEYWDS 3 NEUROBLASTOMA, CANCER, RECEPTOR, KINASE, ONCOGENE, AUG, AUGMENTOR, KEYWDS 4 ALKAL, ALK AND LTK ACTIVATING LIGAND, FAM150, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.STAYROOK,T.LI,D.E.KLEIN REVDAT 3 15-DEC-21 7LIR 1 JRNL REVDAT 2 08-DEC-21 7LIR 1 JRNL REVDAT 1 24-NOV-21 7LIR 0 JRNL AUTH T.LI,S.E.STAYROOK,Y.TSUTSUI,J.ZHANG,Y.WANG,H.LI,A.PROFFITT, JRNL AUTH 2 S.G.KRIMMER,M.AHMED,O.BELLIVEAU,I.X.WALKER,K.C.MUDUMBI, JRNL AUTH 3 Y.SUZUKI,I.LAX,D.ALVARADO,M.A.LEMMON,J.SCHLESSINGER, JRNL AUTH 4 D.E.KLEIN JRNL TITL STRUCTURAL BASIS FOR LIGAND RECEPTION BY ANAPLASTIC LYMPHOMA JRNL TITL 2 KINASE. JRNL REF NATURE V. 600 148 2021 JRNL REFN ESSN 1476-4687 JRNL PMID 34819665 JRNL DOI 10.1038/S41586-021-04141-7 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 42770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2175 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3105 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.4010 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5176 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 315 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.24000 REMARK 3 B22 (A**2) : 2.24000 REMARK 3 B33 (A**2) : -4.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.313 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.260 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.247 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.656 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5644 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4837 ; 0.005 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7631 ; 1.594 ; 1.725 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11241 ; 1.402 ; 1.656 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 7.593 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 297 ;33.936 ;22.795 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 793 ;17.880 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;17.716 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 747 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6390 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1286 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7LIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000254366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : UNDULATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20200417 REMARK 200 DATA SCALING SOFTWARE : SCALA 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44990 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 112.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 26.90 REMARK 200 R MERGE (I) : 0.20500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 26.60 REMARK 200 R MERGE FOR SHELL (I) : 8.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.84 M (NH4)2SO4, BICINE PH 9.0, 28 REMARK 280 MG/ML PROTEIN, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 112.16950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 112.16950 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.26250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 112.16950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.63125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 112.16950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.89375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 112.16950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.89375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 112.16950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.63125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 112.16950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 112.16950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.26250 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 112.16950 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 112.16950 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 57.26250 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 112.16950 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 85.89375 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 112.16950 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 28.63125 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 112.16950 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 28.63125 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 112.16950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 85.89375 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 112.16950 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 112.16950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 57.26250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 TRP A 2 REMARK 465 GLU A 350 REMARK 465 THR B 1 REMARK 465 TRP B 2 REMARK 465 ASP B 3 REMARK 465 ILE B 4 REMARK 465 ASN B 26 REMARK 465 ARG B 27 REMARK 465 GLU B 28 REMARK 465 LEU B 29 REMARK 465 ASP B 30 REMARK 465 GLY B 31 REMARK 465 GLN B 32 REMARK 465 THR B 33 REMARK 465 GLY B 34 REMARK 465 GLU B 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 177 SG CYS A 181 1.39 REMARK 500 O3 NAG C 1 O5 FUC C 5 2.01 REMARK 500 O4 NAG C 2 C2 MAN C 3 2.05 REMARK 500 O3 NAG G 1 O5 FUC G 4 2.09 REMARK 500 O4 NAG G 1 O5 NAG G 2 2.14 REMARK 500 O6 NAG G 1 O5 FUC G 5 2.16 REMARK 500 O4 NAG H 1 O5 NAG H 2 2.16 REMARK 500 O4 NAG C 1 O5 NAG C 2 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 -169.86 -123.20 REMARK 500 ASN A 85 -0.07 76.22 REMARK 500 ASP A 105 -127.24 63.34 REMARK 500 LYS A 125 67.04 -116.42 REMARK 500 TRP A 155 -158.32 -98.36 REMARK 500 ASN A 178 -156.76 -116.33 REMARK 500 ASN A 196 32.30 78.44 REMARK 500 PHE A 211 130.31 -33.55 REMARK 500 SER A 237 -129.39 50.76 REMARK 500 TYR A 266 156.53 177.20 REMARK 500 PRO A 278 152.18 -47.02 REMARK 500 ARG A 285 -25.90 -147.81 REMARK 500 LYS A 286 -164.73 -68.79 REMARK 500 SER A 317 -121.34 54.37 REMARK 500 ILE A 340 47.47 -95.84 REMARK 500 TYR A 341 45.63 -74.24 REMARK 500 ASP A 342 -156.51 -140.41 REMARK 500 ASN B 10 -166.09 -111.15 REMARK 500 ASN B 22 -83.19 -123.04 REMARK 500 CYS B 23 38.48 70.64 REMARK 500 TRP B 45 119.64 -162.42 REMARK 500 CYS B 100 -157.53 -139.40 REMARK 500 ASP B 105 64.66 63.18 REMARK 500 TYR B 120 70.71 -114.72 REMARK 500 ASN B 178 -146.20 -113.53 REMARK 500 SER B 237 -128.30 47.56 REMARK 500 ASP B 249 34.18 -94.54 REMARK 500 PHE B 250 -50.30 -143.73 REMARK 500 ARG B 285 -27.10 -148.86 REMARK 500 LYS B 286 -178.08 -68.16 REMARK 500 PHE B 311 106.27 -47.26 REMARK 500 PRO B 316 -167.03 -77.97 REMARK 500 SER B 318 75.46 56.09 REMARK 500 ILE B 340 38.08 -97.69 REMARK 500 TYR B 344 -32.36 -35.83 REMARK 500 ASP B 346 160.35 176.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 7LIR A 1 350 UNP O76411 SCD2_CAEEL 549 898 DBREF 7LIR B 1 350 UNP O76411 SCD2_CAEEL 549 898 SEQRES 1 A 350 THR TRP ASP ILE PRO ASP LEU PHE ILE ASN THR CYS GLY SEQRES 2 A 350 ALA SER GLY PHE GLU GLN PRO GLN ASN CYS ASP HIS ASN SEQRES 3 A 350 ARG GLU LEU ASP GLY GLN THR GLY HIS PHE LEU LYS GLU SEQRES 4 A 350 ASP GLY THR GLN GLN TRP THR VAL PRO VAL THR GLY PHE SEQRES 5 A 350 TYR ARG MSE GLU ILE CYS GLY ALA GLY GLY GLY SER ASN SEQRES 6 A 350 SER LYS ALA SER GLY ASP THR GLY ASP CYS VAL THR LEU SEQRES 7 A 350 GLN VAL HIS LEU ILE GLU ASN LEU SER LEU ARG MSE LEU SEQRES 8 A 350 ILE GLY GLN MSE GLY GLU SER PRO CYS PHE THR GLU HIS SEQRES 9 A 350 ASP ASP GLU LEU ARG PRO SER SER CYS SER LYS ILE SER SEQRES 10 A 350 HIS ASN TYR VAL TYR ASP GLY LYS ARG GLY ALA ALA GLY SEQRES 11 A 350 GLY GLY ALA THR LEU LEU THR VAL GLU LYS ASP LEU TRP SEQRES 12 A 350 ASN VAL VAL ALA GLY GLY GLY ALA GLY ALA SER TRP ASP SEQRES 13 A 350 GLY PHE ASP MSE GLU VAL GLY TYR GLY ALA SER ALA ILE SEQRES 14 A 350 HIS VAL LYS PRO ASP GLN ARG CYS ASN GLU THR CYS LYS SEQRES 15 A 350 ALA VAL SER HIS THR ASP PHE ILE VAL GLU ARG ARG ASP SEQRES 16 A 350 ASN ARG CYS PRO GLY GLU LYS GLY GLU SER THR VAL PHE SEQRES 17 A 350 GLY GLY PHE GLY GLY GLY GLY ASN SER CYS GLY MSE LEU SEQRES 18 A 350 GLY GLY SER GLY ALA GLY TYR GLN ALA GLY ASN PRO PHE SEQRES 19 A 350 GLY LYS SER ARG ALA ARG SER GLY SER SER ASN VAL SER SEQRES 20 A 350 ILE ASP PHE SER LYS SER PRO ILE TYR TYR GLN SER GLU SEQRES 21 A 350 ARG LEU ASP GLU GLY TYR ILE LYS ILE ALA PHE CYS ARG SEQRES 22 A 350 LYS ARG CYS GLU PRO PRO THR VAL CYS ARG PHE ARG LYS SEQRES 23 A 350 ASP TYR PHE GLU GLU GLU TYR CYS GLY CYS PRO ASP GLY SEQRES 24 A 350 SER ASN VAL THR ASP THR GLU GLU ALA CYS ALA PHE PRO SEQRES 25 A 350 LEU VAL CYS PRO SER SER SER THR ASN GLN TYR ARG ASN SEQRES 26 A 350 PHE THR TYR GLU PRO PHE CYS LEU CYS ASN ASN GLY LYS SEQRES 27 A 350 GLU ILE TYR ASP VAL TYR ASN ASP THR CYS GLU GLU SEQRES 1 B 350 THR TRP ASP ILE PRO ASP LEU PHE ILE ASN THR CYS GLY SEQRES 2 B 350 ALA SER GLY PHE GLU GLN PRO GLN ASN CYS ASP HIS ASN SEQRES 3 B 350 ARG GLU LEU ASP GLY GLN THR GLY HIS PHE LEU LYS GLU SEQRES 4 B 350 ASP GLY THR GLN GLN TRP THR VAL PRO VAL THR GLY PHE SEQRES 5 B 350 TYR ARG MSE GLU ILE CYS GLY ALA GLY GLY GLY SER ASN SEQRES 6 B 350 SER LYS ALA SER GLY ASP THR GLY ASP CYS VAL THR LEU SEQRES 7 B 350 GLN VAL HIS LEU ILE GLU ASN LEU SER LEU ARG MSE LEU SEQRES 8 B 350 ILE GLY GLN MSE GLY GLU SER PRO CYS PHE THR GLU HIS SEQRES 9 B 350 ASP ASP GLU LEU ARG PRO SER SER CYS SER LYS ILE SER SEQRES 10 B 350 HIS ASN TYR VAL TYR ASP GLY LYS ARG GLY ALA ALA GLY SEQRES 11 B 350 GLY GLY ALA THR LEU LEU THR VAL GLU LYS ASP LEU TRP SEQRES 12 B 350 ASN VAL VAL ALA GLY GLY GLY ALA GLY ALA SER TRP ASP SEQRES 13 B 350 GLY PHE ASP MSE GLU VAL GLY TYR GLY ALA SER ALA ILE SEQRES 14 B 350 HIS VAL LYS PRO ASP GLN ARG CYS ASN GLU THR CYS LYS SEQRES 15 B 350 ALA VAL SER HIS THR ASP PHE ILE VAL GLU ARG ARG ASP SEQRES 16 B 350 ASN ARG CYS PRO GLY GLU LYS GLY GLU SER THR VAL PHE SEQRES 17 B 350 GLY GLY PHE GLY GLY GLY GLY ASN SER CYS GLY MSE LEU SEQRES 18 B 350 GLY GLY SER GLY ALA GLY TYR GLN ALA GLY ASN PRO PHE SEQRES 19 B 350 GLY LYS SER ARG ALA ARG SER GLY SER SER ASN VAL SER SEQRES 20 B 350 ILE ASP PHE SER LYS SER PRO ILE TYR TYR GLN SER GLU SEQRES 21 B 350 ARG LEU ASP GLU GLY TYR ILE LYS ILE ALA PHE CYS ARG SEQRES 22 B 350 LYS ARG CYS GLU PRO PRO THR VAL CYS ARG PHE ARG LYS SEQRES 23 B 350 ASP TYR PHE GLU GLU GLU TYR CYS GLY CYS PRO ASP GLY SEQRES 24 B 350 SER ASN VAL THR ASP THR GLU GLU ALA CYS ALA PHE PRO SEQRES 25 B 350 LEU VAL CYS PRO SER SER SER THR ASN GLN TYR ARG ASN SEQRES 26 B 350 PHE THR TYR GLU PRO PHE CYS LEU CYS ASN ASN GLY LYS SEQRES 27 B 350 GLU ILE TYR ASP VAL TYR ASN ASP THR CYS GLU GLU MODRES 7LIR MSE A 55 MET MODIFIED RESIDUE MODRES 7LIR MSE A 90 MET MODIFIED RESIDUE MODRES 7LIR MSE A 95 MET MODIFIED RESIDUE MODRES 7LIR MSE A 160 MET MODIFIED RESIDUE MODRES 7LIR MSE A 220 MET MODIFIED RESIDUE MODRES 7LIR MSE B 55 MET MODIFIED RESIDUE MODRES 7LIR MSE B 90 MET MODIFIED RESIDUE MODRES 7LIR MSE B 95 MET MODIFIED RESIDUE MODRES 7LIR MSE B 160 MET MODIFIED RESIDUE MODRES 7LIR MSE B 220 MET MODIFIED RESIDUE HET MSE A 55 8 HET MSE A 90 8 HET MSE A 95 8 HET MSE A 160 8 HET MSE A 220 8 HET MSE B 55 8 HET MSE B 90 8 HET MSE B 95 8 HET MSE B 160 8 HET MSE B 220 8 HET NAG C 1 14 HET NAG C 2 14 HET MAN C 3 11 HET MAN C 4 11 HET FUC C 5 10 HET FUC C 6 10 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET FUC E 2 10 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET MAN G 3 11 HET FUC G 4 10 HET FUC G 5 10 HET NAG H 1 14 HET NAG H 2 14 HET MAN H 3 11 HET NAG I 1 14 HET NAG I 2 14 HET SO4 A 401 5 HET SO4 A 402 5 HET NAG B 401 14 HET SO4 B 402 5 HET SO4 B 403 5 HET SO4 B 404 5 HETNAM MSE SELENOMETHIONINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 NAG 14(C8 H15 N O6) FORMUL 3 MAN 4(C6 H12 O6) FORMUL 3 FUC 5(C6 H12 O5) FORMUL 10 SO4 5(O4 S 2-) FORMUL 16 HOH *169(H2 O) HELIX 1 AA1 ASN A 178 SER A 185 1 8 HELIX 2 AA2 PRO A 199 THR A 206 5 8 HELIX 3 AA3 LYS A 236 SER A 241 5 6 HELIX 4 AA4 LYS A 286 GLU A 290 5 5 HELIX 5 AA5 ASN A 301 THR A 305 5 5 HELIX 6 AA6 ASN B 178 SER B 185 1 8 HELIX 7 AA7 PRO B 199 THR B 206 5 8 HELIX 8 AA8 LYS B 236 SER B 241 5 6 HELIX 9 AA9 LYS B 286 GLU B 290 5 5 SHEET 1 AA1 5 LEU A 7 ILE A 9 0 SHEET 2 AA1 5 TYR A 266 PHE A 271 -1 O ILE A 267 N ILE A 9 SHEET 3 AA1 5 GLY A 51 CYS A 58 -1 N ARG A 54 O ALA A 270 SHEET 4 AA1 5 ASP A 74 LEU A 82 -1 O LEU A 78 N MSE A 55 SHEET 5 AA1 5 ILE A 255 GLN A 258 -1 O TYR A 257 N CYS A 75 SHEET 1 AA2 6 HIS A 35 LEU A 37 0 SHEET 2 AA2 6 GLN A 43 THR A 46 -1 O GLN A 44 N PHE A 36 SHEET 3 AA2 6 SER A 87 LEU A 91 -1 O LEU A 88 N TRP A 45 SHEET 4 AA2 6 THR A 134 THR A 137 -1 O THR A 137 N ARG A 89 SHEET 5 AA2 6 VAL A 145 ALA A 147 -1 O ALA A 147 N THR A 134 SHEET 6 AA2 6 ASN A 245 VAL A 246 -1 O ASN A 245 N VAL A 146 SHEET 1 AA3 3 GLU A 107 CYS A 113 0 SHEET 2 AA3 3 SER A 98 HIS A 104 -1 N SER A 98 O CYS A 113 SHEET 3 AA3 3 TYR A 122 ASP A 123 -1 O TYR A 122 N PHE A 101 SHEET 1 AA4 2 VAL A 281 PHE A 284 0 SHEET 2 AA4 2 GLU A 292 GLY A 295 -1 O GLY A 295 N VAL A 281 SHEET 1 AA5 2 SER A 319 TYR A 323 0 SHEET 2 AA5 2 PRO A 330 CYS A 334 -1 O LEU A 333 N THR A 320 SHEET 1 AA6 5 LEU B 7 ILE B 9 0 SHEET 2 AA6 5 TYR B 266 PHE B 271 -1 O ILE B 267 N ILE B 9 SHEET 3 AA6 5 GLY B 51 CYS B 58 -1 N ARG B 54 O ALA B 270 SHEET 4 AA6 5 ASP B 74 LEU B 82 -1 O VAL B 76 N ILE B 57 SHEET 5 AA6 5 ILE B 255 GLN B 258 -1 O TYR B 257 N CYS B 75 SHEET 1 AA7 5 GLN B 43 THR B 46 0 SHEET 2 AA7 5 SER B 87 LEU B 91 -1 O LEU B 88 N TRP B 45 SHEET 3 AA7 5 THR B 134 THR B 137 -1 O LEU B 135 N LEU B 91 SHEET 4 AA7 5 VAL B 145 ALA B 147 -1 O ALA B 147 N THR B 134 SHEET 5 AA7 5 ASN B 245 VAL B 246 -1 O ASN B 245 N VAL B 146 SHEET 1 AA8 2 SER B 98 GLU B 103 0 SHEET 2 AA8 2 LEU B 108 CYS B 113 -1 O SER B 111 N CYS B 100 SHEET 1 AA9 2 VAL B 281 PHE B 284 0 SHEET 2 AA9 2 GLU B 292 GLY B 295 -1 O GLY B 295 N VAL B 281 SHEET 1 AB1 2 SER B 319 TYR B 323 0 SHEET 2 AB1 2 PRO B 330 CYS B 334 -1 O PHE B 331 N GLN B 322 SSBOND 1 CYS A 12 CYS A 23 1555 1555 2.02 SSBOND 2 CYS A 58 CYS A 75 1555 1555 2.07 SSBOND 3 CYS A 100 CYS A 113 1555 1555 2.12 SSBOND 4 CYS A 198 CYS A 218 1555 1555 2.02 SSBOND 5 CYS A 272 CYS A 282 1555 1555 2.03 SSBOND 6 CYS A 276 CYS A 294 1555 1555 2.07 SSBOND 7 CYS A 296 CYS A 309 1555 1555 2.05 SSBOND 8 CYS A 315 CYS A 332 1555 1555 2.05 SSBOND 9 CYS A 334 CYS A 348 1555 1555 2.02 SSBOND 10 CYS B 12 CYS B 23 1555 1555 2.04 SSBOND 11 CYS B 58 CYS B 75 1555 1555 1.97 SSBOND 12 CYS B 100 CYS B 113 1555 1555 2.08 SSBOND 13 CYS B 177 CYS B 181 1555 1555 2.08 SSBOND 14 CYS B 198 CYS B 218 1555 1555 2.01 SSBOND 15 CYS B 272 CYS B 282 1555 1555 2.04 SSBOND 16 CYS B 276 CYS B 294 1555 1555 2.06 SSBOND 17 CYS B 296 CYS B 309 1555 1555 2.06 SSBOND 18 CYS B 315 CYS B 332 1555 1555 2.04 SSBOND 19 CYS B 334 CYS B 348 1555 1555 2.03 LINK C ARG A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N GLU A 56 1555 1555 1.33 LINK C ARG A 89 N MSE A 90 1555 1555 1.32 LINK C MSE A 90 N LEU A 91 1555 1555 1.34 LINK C GLN A 94 N MSE A 95 1555 1555 1.32 LINK C MSE A 95 N GLY A 96 1555 1555 1.33 LINK C ASP A 159 N MSE A 160 1555 1555 1.32 LINK C MSE A 160 N GLU A 161 1555 1555 1.34 LINK ND2 ASN A 178 C1 NAG C 1 1555 1555 1.32 LINK C GLY A 219 N MSE A 220 1555 1555 1.33 LINK C MSE A 220 N LEU A 221 1555 1555 1.33 LINK ND2 ASN A 245 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN A 301 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN A 325 C1 NAG F 1 1555 1555 1.47 LINK C ARG B 54 N MSE B 55 1555 1555 1.34 LINK C MSE B 55 N GLU B 56 1555 1555 1.33 LINK C ARG B 89 N MSE B 90 1555 1555 1.33 LINK C MSE B 90 N LEU B 91 1555 1555 1.34 LINK C GLN B 94 N MSE B 95 1555 1555 1.33 LINK C MSE B 95 N GLY B 96 1555 1555 1.34 LINK C ASP B 159 N MSE B 160 1555 1555 1.33 LINK C MSE B 160 N GLU B 161 1555 1555 1.34 LINK ND2 ASN B 178 C1 NAG G 1 1555 1555 1.44 LINK C GLY B 219 N MSE B 220 1555 1555 1.34 LINK C MSE B 220 N LEU B 221 1555 1555 1.32 LINK ND2 ASN B 245 C1 NAG H 1 1555 1555 1.45 LINK ND2 ASN B 301 C1 NAG B 401 1555 1555 1.46 LINK ND2 ASN B 325 C1 NAG I 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.34 LINK O3 NAG C 1 C1 FUC C 5 1555 1555 1.33 LINK O6 NAG C 1 C1 FUC C 6 1555 1555 1.29 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.34 LINK O3 MAN C 3 C1 MAN C 4 1555 1555 1.34 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.36 LINK O4 NAG E 1 C1 FUC E 2 1555 1555 1.36 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.36 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.34 LINK O3 NAG G 1 C1 FUC G 4 1555 1555 1.35 LINK O6 NAG G 1 C1 FUC G 5 1555 1555 1.33 LINK O4 NAG G 2 C1 MAN G 3 1555 1555 1.35 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.35 LINK O4 NAG H 2 C1 MAN H 3 1555 1555 1.35 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.35 CISPEP 1 PRO A 278 PRO A 279 0 2.79 CISPEP 2 PRO B 278 PRO B 279 0 12.77 CRYST1 224.339 224.339 114.525 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004458 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008732 0.00000