HEADER VIRUS LIKE PARTICLE 27-JAN-21 7LIS TITLE THERMOTOGA MARITIMA ENCAPSULIN NANOCOMPARTMENT PORE MUTANT S5D COMPND MOL_ID: 1; COMPND 2 MOLECULE: MARITIMACIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THERMOTOGA BACTERIOCIN, ENCAPSULIN NANOCOMPARTMENT PORE; COMPND 5 EC: 3.4.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: TM_0785; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ENCAPSULIN, NANOCOMPARTMENT, VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR M.P.ANDREAS,L.ADAMSON,N.TASNEEM,W.CLOSE,T.GIESSEN,Y.H.LAU REVDAT 2 16-FEB-22 7LIS 1 JRNL REVDAT 1 09-FEB-22 7LIS 0 JRNL AUTH L.S.R.ADAMSON,N.TASNEEM,M.P.ANDREAS,W.CLOSE,E.N.JENNER, JRNL AUTH 2 T.N.SZYSZKA,R.YOUNG,L.C.CHEAH,A.NORMAN, JRNL AUTH 3 H.I.MACDERMOTT-OPESKIN,M.L.O'MARA,F.SAINSBURY,T.W.GIESSEN, JRNL AUTH 4 Y.H.LAU JRNL TITL PORE STRUCTURE CONTROLS STABILITY AND MOLECULAR FLUX IN JRNL TITL 2 ENGINEERED PROTEIN CAGES. JRNL REF SCI ADV V. 8 L7346 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 35119930 JRNL DOI 10.1126/SCIADV.ABL7346 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, LEGINON, CRYOSPARC, UCSF REMARK 3 CHIMERA, COOT, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3DKT REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 51.860 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.960 REMARK 3 NUMBER OF PARTICLES : 33416 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7LIS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000254444. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : THERMOTOGA MARITIMA ENCAPSULIN REMARK 245 NANOCOMPARTMENT PORE MUTANT S5D REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT FORCE 0, WAIT TIME 30 REMARK 245 SECONDS REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : THERMOTOGA MARATIMA ENCAPSULIN REMARK 245 PORE MUTANT WITH E184D, P189D, AND DELETION OF AMINO ACIDS A185- REMARK 245 Y188 REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS TALOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : -1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : -2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809016 0.500001 0.309018 -117.00157 REMARK 350 BIOMT2 2 -0.500001 0.309017 0.809016 72.31120 REMARK 350 BIOMT3 2 0.309017 -0.809017 0.500001 189.31205 REMARK 350 BIOMT1 3 0.499998 0.309017 0.809018 -117.00127 REMARK 350 BIOMT2 3 -0.309018 -0.809017 0.499999 306.31404 REMARK 350 BIOMT3 3 0.809018 -0.500000 -0.309015 189.31180 REMARK 350 BIOMT1 4 0.499998 -0.309018 0.809018 0.00048 REMARK 350 BIOMT2 4 0.309017 -0.809017 -0.500000 378.62454 REMARK 350 BIOMT3 4 0.809018 0.499999 -0.309015 -0.00040 REMARK 350 BIOMT1 5 0.809016 -0.500001 0.309017 72.31125 REMARK 350 BIOMT2 5 0.500001 0.309017 -0.809017 189.31206 REMARK 350 BIOMT3 5 0.309018 0.809016 0.500001 -117.00153 REMARK 350 BIOMT1 6 0.309018 0.809016 0.500001 -117.00176 REMARK 350 BIOMT2 6 0.809016 -0.500001 0.309017 72.31171 REMARK 350 BIOMT3 6 0.500001 0.309017 -0.809016 189.31174 REMARK 350 BIOMT1 7 0.000000 0.000000 1.000000 -0.00019 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00050 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 -0.00031 REMARK 350 BIOMT1 8 0.309017 -0.809017 0.500001 189.31184 REMARK 350 BIOMT2 8 0.809016 0.500001 0.309018 -117.00108 REMARK 350 BIOMT3 8 -0.500001 0.309017 0.809016 72.31091 REMARK 350 BIOMT1 9 0.809018 -0.500000 -0.309015 189.31154 REMARK 350 BIOMT2 9 0.499998 0.309017 0.809018 -117.00083 REMARK 350 BIOMT3 9 -0.309018 -0.809017 0.499999 306.31375 REMARK 350 BIOMT1 10 0.809018 0.499999 -0.309015 -0.00068 REMARK 350 BIOMT2 10 0.499998 -0.309018 0.809018 0.00090 REMARK 350 BIOMT3 10 0.309017 -0.809017 -0.500000 378.62424 REMARK 350 BIOMT1 11 -0.809019 -0.499997 0.309016 378.62373 REMARK 350 BIOMT2 11 -0.499997 0.309017 -0.809019 378.62396 REMARK 350 BIOMT3 11 0.309016 -0.809019 -0.499997 378.62432 REMARK 350 BIOMT1 12 -0.309019 -0.809017 -0.499999 495.62530 REMARK 350 BIOMT2 12 -0.809015 0.500002 -0.309019 306.31276 REMARK 350 BIOMT3 12 0.500002 0.309014 -0.809017 189.31228 REMARK 350 BIOMT1 13 0.000000 -0.000002 -1.000000 378.62422 REMARK 350 BIOMT2 13 -1.000000 0.000002 0.000000 378.62356 REMARK 350 BIOMT3 13 0.000002 1.000000 -0.000002 -0.00023 REMARK 350 BIOMT1 14 -0.309016 0.809016 -0.500003 189.31200 REMARK 350 BIOMT2 14 -0.809017 -0.500000 -0.309016 495.62530 REMARK 350 BIOMT3 14 -0.500000 0.309020 0.809016 72.31026 REMARK 350 BIOMT1 15 -0.809017 0.500002 0.309014 189.31170 REMARK 350 BIOMT2 15 -0.499999 -0.309019 -0.809017 495.62554 REMARK 350 BIOMT3 15 -0.309019 -0.809015 0.500002 306.31310 REMARK 350 BIOMT1 16 -0.499999 -0.309019 -0.809017 495.62511 REMARK 350 BIOMT2 16 -0.309019 -0.809015 0.500002 306.31326 REMARK 350 BIOMT3 16 -0.809017 0.500002 0.309014 189.31196 REMARK 350 BIOMT1 17 -0.499997 0.309016 -0.809019 378.62354 REMARK 350 BIOMT2 17 0.309016 -0.809019 -0.499997 378.62446 REMARK 350 BIOMT3 17 -0.809019 -0.499997 0.309016 378.62401 REMARK 350 BIOMT1 18 -0.809015 0.500002 -0.309019 306.31229 REMARK 350 BIOMT2 18 0.500002 0.309014 -0.809017 189.31241 REMARK 350 BIOMT3 18 -0.309019 -0.809017 -0.499999 495.62554 REMARK 350 BIOMT1 19 -1.000000 0.000003 0.000000 378.62305 REMARK 350 BIOMT2 19 0.000003 1.000000 -0.000002 -0.00008 REMARK 350 BIOMT3 19 0.000000 -0.000002 -1.000000 378.62442 REMARK 350 BIOMT1 20 -0.809017 -0.500000 -0.309016 495.62481 REMARK 350 BIOMT2 20 -0.500000 0.309020 0.809016 72.31042 REMARK 350 BIOMT3 20 -0.309016 0.809016 -0.500003 189.31222 REMARK 350 BIOMT1 21 0.809016 -0.500000 0.309020 72.31045 REMARK 350 BIOMT2 21 -0.500003 -0.309016 0.809016 189.31271 REMARK 350 BIOMT3 21 -0.309016 -0.809017 -0.500000 495.62524 REMARK 350 BIOMT1 22 1.000000 -0.000003 0.000003 0.00000 REMARK 350 BIOMT2 22 -0.000003 -1.000000 0.000000 378.62495 REMARK 350 BIOMT3 22 0.000003 0.000000 -1.000000 378.62352 REMARK 350 BIOMT1 23 0.809018 0.499998 0.309017 -117.00127 REMARK 350 BIOMT2 23 0.499999 -0.309018 -0.809017 306.31404 REMARK 350 BIOMT3 23 -0.309015 0.809018 -0.500000 189.31117 REMARK 350 BIOMT1 24 0.500001 0.309018 0.809016 -117.00157 REMARK 350 BIOMT2 24 0.309017 0.809016 -0.500001 72.31120 REMARK 350 BIOMT3 24 -0.809016 0.500001 0.309017 189.31142 REMARK 350 BIOMT1 25 0.499999 -0.309015 0.809018 -0.00049 REMARK 350 BIOMT2 25 -0.309018 0.809018 0.499998 0.00040 REMARK 350 BIOMT3 25 -0.809017 -0.500000 0.309017 378.62393 REMARK 350 BIOMT1 26 0.000003 1.000000 -0.000002 -0.00051 REMARK 350 BIOMT2 26 0.000000 -0.000002 -1.000000 378.62464 REMARK 350 BIOMT3 26 -1.000000 0.000003 0.000000 378.62333 REMARK 350 BIOMT1 27 -0.500000 0.309020 0.809016 72.30995 REMARK 350 BIOMT2 27 -0.309016 0.809016 -0.500003 189.31240 REMARK 350 BIOMT3 27 -0.809018 -0.500000 -0.309016 495.62504 REMARK 350 BIOMT1 28 -0.309019 -0.809015 0.500002 306.31279 REMARK 350 BIOMT2 28 -0.809017 0.500002 0.309014 189.31210 REMARK 350 BIOMT3 28 -0.499999 -0.309019 -0.809017 495.62535 REMARK 350 BIOMT1 29 0.309016 -0.809019 -0.499997 378.62404 REMARK 350 BIOMT2 29 -0.809019 -0.499997 0.309016 378.62415 REMARK 350 BIOMT3 29 -0.499997 0.309016 -0.809019 378.62382 REMARK 350 BIOMT1 30 0.500002 0.309014 -0.809017 189.31201 REMARK 350 BIOMT2 30 -0.309019 -0.809017 -0.499999 495.62574 REMARK 350 BIOMT3 30 -0.809015 0.500002 -0.309019 306.31259 REMARK 350 BIOMT1 31 -0.309018 -0.809017 0.499999 306.31358 REMARK 350 BIOMT2 31 0.809018 -0.500000 -0.309015 189.31207 REMARK 350 BIOMT3 31 0.499998 0.309017 0.809018 -117.00103 REMARK 350 BIOMT1 32 0.309017 -0.809017 -0.500000 378.62404 REMARK 350 BIOMT2 32 0.809018 0.499999 -0.309015 -0.00017 REMARK 350 BIOMT3 32 0.499998 -0.309018 0.809018 0.00068 REMARK 350 BIOMT1 33 0.500001 0.309017 -0.809016 189.31153 REMARK 350 BIOMT2 33 0.309018 0.809016 0.500001 -117.00127 REMARK 350 BIOMT3 33 0.809016 -0.500001 0.309017 72.31142 REMARK 350 BIOMT1 34 0.000000 1.000000 0.000000 -0.00050 REMARK 350 BIOMT2 34 0.000000 0.000000 1.000000 0.00031 REMARK 350 BIOMT3 34 1.000000 0.000000 0.000000 0.00019 REMARK 350 BIOMT1 35 -0.500001 0.309017 0.809016 72.31074 REMARK 350 BIOMT2 35 0.309017 -0.809017 0.500001 189.31237 REMARK 350 BIOMT3 35 0.809016 0.500001 0.309018 -117.00134 REMARK 350 BIOMT1 36 -0.500000 0.309017 -0.809017 378.62354 REMARK 350 BIOMT2 36 -0.309015 0.809018 0.499999 -0.00048 REMARK 350 BIOMT3 36 0.809018 0.499998 -0.309018 0.00049 REMARK 350 BIOMT1 37 -0.809017 0.499999 -0.309018 306.31308 REMARK 350 BIOMT2 37 -0.500000 -0.309015 0.809018 189.31176 REMARK 350 BIOMT3 37 0.309017 0.809018 0.499998 -117.00123 REMARK 350 BIOMT1 38 -1.000000 0.000000 -0.000003 378.62403 REMARK 350 BIOMT2 38 0.000000 -1.000000 0.000002 378.62406 REMARK 350 BIOMT3 38 -0.000003 0.000002 1.000000 0.00008 REMARK 350 BIOMT1 39 -0.809017 -0.499999 -0.309019 495.62511 REMARK 350 BIOMT2 39 0.500002 -0.309019 -0.809015 306.31326 REMARK 350 BIOMT3 39 0.309014 -0.809017 0.500002 189.31259 REMARK 350 BIOMT1 40 -0.500000 -0.309016 -0.809018 495.62481 REMARK 350 BIOMT2 40 0.309020 0.809016 -0.500000 72.31042 REMARK 350 BIOMT3 40 0.809016 -0.500003 -0.309016 189.31284 REMARK 350 BIOMT1 41 0.809016 -0.500003 -0.309016 189.31262 REMARK 350 BIOMT2 41 -0.500000 -0.309016 -0.809017 495.62530 REMARK 350 BIOMT3 41 0.309020 0.809016 -0.500000 72.31026 REMARK 350 BIOMT1 42 0.809018 0.499998 -0.309018 0.00029 REMARK 350 BIOMT2 42 -0.500000 0.309017 -0.809017 378.62404 REMARK 350 BIOMT3 42 -0.309015 0.809018 0.499999 -0.00071 REMARK 350 BIOMT1 43 0.309017 0.809018 0.499998 -117.00147 REMARK 350 BIOMT2 43 -0.809017 0.499999 -0.309018 306.31354 REMARK 350 BIOMT3 43 -0.500000 -0.309015 0.809018 189.31148 REMARK 350 BIOMT1 44 -0.000003 0.000002 1.000000 -0.00020 REMARK 350 BIOMT2 44 -1.000000 0.000000 -0.000003 378.62444 REMARK 350 BIOMT3 44 0.000000 -1.000000 0.000002 378.62383 REMARK 350 BIOMT1 45 0.309014 -0.809017 0.500002 189.31232 REMARK 350 BIOMT2 45 -0.809017 -0.499999 -0.309019 495.62554 REMARK 350 BIOMT3 45 0.500002 -0.309019 -0.809015 306.31310 REMARK 350 BIOMT1 46 -0.309018 0.809018 0.499998 -0.00002 REMARK 350 BIOMT2 46 -0.809017 -0.500000 0.309017 378.62423 REMARK 350 BIOMT3 46 0.499999 -0.309015 0.809018 -0.00021 REMARK 350 BIOMT1 47 -0.500003 -0.309016 0.809016 189.31231 REMARK 350 BIOMT2 47 -0.309016 -0.809017 -0.500000 495.62549 REMARK 350 BIOMT3 47 0.809016 -0.500000 0.309020 72.31076 REMARK 350 BIOMT1 48 -0.000003 -1.000000 0.000000 378.62453 REMARK 350 BIOMT2 48 0.000002 0.000000 -1.000000 378.62375 REMARK 350 BIOMT3 48 1.000000 -0.000003 0.000002 0.00028 REMARK 350 BIOMT1 49 0.499999 -0.309018 -0.809017 306.31358 REMARK 350 BIOMT2 49 -0.309015 0.809018 -0.500000 189.31145 REMARK 350 BIOMT3 49 0.809018 0.499998 0.309017 -117.00103 REMARK 350 BIOMT1 50 0.309017 0.809016 -0.500001 72.31075 REMARK 350 BIOMT2 50 -0.809017 0.500001 0.309017 189.31174 REMARK 350 BIOMT3 50 0.500001 0.309018 0.809016 -117.00134 REMARK 350 BIOMT1 51 -0.500000 -0.309015 0.809018 189.31122 REMARK 350 BIOMT2 51 0.309017 0.809018 0.499998 -117.00102 REMARK 350 BIOMT3 51 -0.809017 0.499999 -0.309018 306.31325 REMARK 350 BIOMT1 52 0.000000 -1.000000 0.000002 378.62355 REMARK 350 BIOMT2 52 -0.000002 0.000002 1.000000 0.00023 REMARK 350 BIOMT3 52 -1.000000 0.000000 -0.000002 378.62422 REMARK 350 BIOMT1 53 0.500002 -0.309019 -0.809015 306.31279 REMARK 350 BIOMT2 53 0.309014 -0.809017 0.500002 189.31272 REMARK 350 BIOMT3 53 -0.809017 -0.499999 -0.309019 495.62535 REMARK 350 BIOMT1 54 0.309020 0.809016 -0.500000 72.30995 REMARK 350 BIOMT2 54 0.809016 -0.500003 -0.309016 189.31302 REMARK 350 BIOMT3 54 -0.500000 -0.309016 -0.809018 495.62504 REMARK 350 BIOMT1 55 -0.309015 0.809018 0.499999 -0.00099 REMARK 350 BIOMT2 55 0.809018 0.499998 -0.309018 0.00071 REMARK 350 BIOMT3 55 -0.500000 0.309017 -0.809017 378.62373 REMARK 350 BIOMT1 56 0.000003 0.000000 -1.000000 378.62324 REMARK 350 BIOMT2 56 1.000000 -0.000002 0.000003 0.00042 REMARK 350 BIOMT3 56 -0.000002 -1.000000 0.000000 378.62472 REMARK 350 BIOMT1 57 -0.309015 0.809018 -0.500000 189.31092 REMARK 350 BIOMT2 57 0.809018 0.499998 0.309017 -117.00083 REMARK 350 BIOMT3 57 0.499999 -0.309018 -0.809017 306.31375 REMARK 350 BIOMT1 58 -0.809017 0.500001 0.309017 189.31122 REMARK 350 BIOMT2 58 0.500001 0.309017 0.809016 -117.00108 REMARK 350 BIOMT3 58 0.309017 0.809016 -0.500001 72.31091 REMARK 350 BIOMT1 59 -0.809017 -0.500000 0.309017 378.62373 REMARK 350 BIOMT2 59 0.499999 -0.309015 0.809018 0.00002 REMARK 350 BIOMT3 59 -0.309018 0.809018 0.499998 0.00018 REMARK 350 BIOMT1 60 -0.309016 -0.809017 -0.500000 495.62500 REMARK 350 BIOMT2 60 0.809016 -0.500000 0.309020 72.31093 REMARK 350 BIOMT3 60 -0.500003 -0.309016 0.809016 189.31252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 36 23.32 -143.41 REMARK 500 GLU A 165 -160.41 -124.21 REMARK 500 LYS A 188 -13.02 72.46 REMARK 500 ASP A 207 -153.68 -142.42 REMARK 500 LYS A 235 -25.89 66.85 REMARK 500 ASP A 236 2.92 -152.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RBF A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-23384 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-23379 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-23380 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-23381 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-23382 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-23383 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-23385 RELATED DB: EMDB DBREF 7LIS A 1 261 UNP Q9WZP2 MARIT_THEMA 1 265 SEQADV 7LIS ASP A 184 UNP Q9WZP2 GLU 184 ENGINEERED MUTATION SEQADV 7LIS A UNP Q9WZP2 ALA 185 DELETION SEQADV 7LIS A UNP Q9WZP2 GLY 186 DELETION SEQADV 7LIS A UNP Q9WZP2 HIS 187 DELETION SEQADV 7LIS A UNP Q9WZP2 TYR 188 DELETION SEQADV 7LIS ASP A 185 UNP Q9WZP2 PRO 189 ENGINEERED MUTATION SEQRES 1 A 261 MET GLU PHE LEU LYS ARG SER PHE ALA PRO LEU THR GLU SEQRES 2 A 261 LYS GLN TRP GLN GLU ILE ASP ASN ARG ALA ARG GLU ILE SEQRES 3 A 261 PHE LYS THR GLN LEU TYR GLY ARG LYS PHE VAL ASP VAL SEQRES 4 A 261 GLU GLY PRO TYR GLY TRP GLU TYR ALA ALA HIS PRO LEU SEQRES 5 A 261 GLY GLU VAL GLU VAL LEU SER ASP GLU ASN GLU VAL VAL SEQRES 6 A 261 LYS TRP GLY LEU ARG LYS SER LEU PRO LEU ILE GLU LEU SEQRES 7 A 261 ARG ALA THR PHE THR LEU ASP LEU TRP GLU LEU ASP ASN SEQRES 8 A 261 LEU GLU ARG GLY LYS PRO ASN VAL ASP LEU SER SER LEU SEQRES 9 A 261 GLU GLU THR VAL ARG LYS VAL ALA GLU PHE GLU ASP GLU SEQRES 10 A 261 VAL ILE PHE ARG GLY CYS GLU LYS SER GLY VAL LYS GLY SEQRES 11 A 261 LEU LEU SER PHE GLU GLU ARG LYS ILE GLU CYS GLY SER SEQRES 12 A 261 THR PRO LYS ASP LEU LEU GLU ALA ILE VAL ARG ALA LEU SEQRES 13 A 261 SER ILE PHE SER LYS ASP GLY ILE GLU GLY PRO TYR THR SEQRES 14 A 261 LEU VAL ILE ASN THR ASP ARG TRP ILE ASN PHE LEU LYS SEQRES 15 A 261 GLU ASP ASP LEU GLU LYS ARG VAL GLU GLU CYS LEU ARG SEQRES 16 A 261 GLY GLY LYS ILE ILE THR THR PRO ARG ILE GLU ASP ALA SEQRES 17 A 261 LEU VAL VAL SER GLU ARG GLY GLY ASP PHE LYS LEU ILE SEQRES 18 A 261 LEU GLY GLN ASP LEU SER ILE GLY TYR GLU ASP ARG GLU SEQRES 19 A 261 LYS ASP ALA VAL ARG LEU PHE ILE THR GLU THR PHE THR SEQRES 20 A 261 PHE GLN VAL VAL ASN PRO GLU ALA LEU ILE LEU LEU LYS SEQRES 21 A 261 PHE HET RBF A 301 27 HETNAM RBF RIBOFLAVIN HETSYN RBF RIBOFLAVINE; VITAMIN B2 FORMUL 2 RBF C17 H20 N4 O6 HELIX 1 AA1 LYS A 5 ALA A 9 5 5 HELIX 2 AA2 THR A 12 LEU A 31 1 20 HELIX 3 AA3 TYR A 32 PHE A 36 5 5 HELIX 4 AA4 LEU A 86 GLY A 95 1 10 HELIX 5 AA5 LEU A 101 GLY A 122 1 22 HELIX 6 AA6 GLY A 130 GLU A 136 5 7 HELIX 7 AA7 THR A 144 GLY A 163 1 20 HELIX 8 AA8 THR A 174 ASP A 184 1 11 HELIX 9 AA9 ARG A 189 LEU A 194 1 6 HELIX 10 AB1 ASN A 252 GLU A 254 5 3 SHEET 1 AA1 4 ASP A 38 GLU A 40 0 SHEET 2 AA1 4 PHE A 218 ARG A 233 1 O LEU A 220 N GLU A 40 SHEET 3 AA1 4 ALA A 237 VAL A 250 -1 O THR A 245 N GLY A 223 SHEET 4 AA1 4 ILE A 76 ASP A 85 -1 N ILE A 76 O PHE A 246 SHEET 1 AA2 2 ALA A 49 VAL A 57 0 SHEET 2 AA2 2 GLY A 68 PRO A 74 -1 O LEU A 69 N GLU A 56 SHEET 1 AA3 5 LYS A 138 GLU A 140 0 SHEET 2 AA3 5 LEU A 256 LYS A 260 1 O LEU A 258 N ILE A 139 SHEET 3 AA3 5 ALA A 208 SER A 212 -1 N VAL A 210 O ILE A 257 SHEET 4 AA3 5 TYR A 168 ASN A 173 -1 N VAL A 171 O LEU A 209 SHEET 5 AA3 5 ILE A 199 THR A 202 1 O ILE A 200 N LEU A 170 SITE 1 AC1 3 TRP A 87 ASP A 90 ARG A 94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000