data_7LIT # _entry.id 7LIT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7LIT pdb_00007lit 10.2210/pdb7lit/pdb WWPDB D_1000254448 ? ? EMDB EMD-23385 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-23385 'associated EM volume' EMDB . EMD-23379 'other EM volume' EMDB . EMD-23380 'other EM volume' EMDB . EMD-23381 'other EM volume' EMDB . EMD-23382 'other EM volume' EMDB . EMD-23383 'other EM volume' EMDB . EMD-23384 'other EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7LIT _pdbx_database_status.recvd_initial_deposition_date 2021-01-27 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Andreas, M.P.' 1 ? 'Adamson, L.' 2 ? 'Tasneem, N.' 3 ? 'Close, W.' 4 ? 'Giessen, T.' 5 0000-0001-6328-2031 'Lau, Y.H.' 6 0000-0001-6560-8410 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Sci Adv' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2375-2548 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first eabl7346 _citation.page_last eabl7346 _citation.title 'Pore structure controls stability and molecular flux in engineered protein cages.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/sciadv.abl7346 _citation.pdbx_database_id_PubMed 35119930 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Adamson, L.S.R.' 1 0000-0002-9862-9557 primary 'Tasneem, N.' 2 0000-0002-1125-7149 primary 'Andreas, M.P.' 3 0000-0001-8871-3053 primary 'Close, W.' 4 0000-0002-1481-7068 primary 'Jenner, E.N.' 5 0000-0003-2696-2534 primary 'Szyszka, T.N.' 6 0000-0002-9921-3086 primary 'Young, R.' 7 ? primary 'Cheah, L.C.' 8 0000-0002-0072-2885 primary 'Norman, A.' 9 ? primary 'MacDermott-Opeskin, H.I.' 10 0000-0002-7393-7457 primary ;O'Mara, M.L. ; 11 0000-0002-8764-1585 primary 'Sainsbury, F.' 12 0000-0001-8152-3820 primary 'Giessen, T.W.' 13 0000-0001-6328-2031 primary 'Lau, Y.H.' 14 0000-0001-6560-8410 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7LIT _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LIT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Maritimacin 29603.766 1 3.4.-.- 'K182G, L190G, Del(182-189)' ? ? 2 non-polymer syn RIBOFLAVIN 376.364 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Thermotoga bacteriocin, Encapsulin Nanocompartment Pore' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MEFLKRSFAPLTEKQWQEIDNRAREIFKTQLYGRKFVDVEGPYGWEYAAHPLGEVEVLSDENEVVKWGLRKSLPLIELRA TFTLDLWELDNLERGKPNVDLSSLEETVRKVAEFEDEVIFRGCEKSGVKGLLSFEERKIECGSTPKDLLEAIVRALSIFS KDGIEGPYTLVINTDRWINFLGGEKRVEECLRGGKIITTPRIEDALVVSERGGDFKLILGQDLSIGYEDREKDAVRLFIT ETFTFQVVNPEALILLKF ; _entity_poly.pdbx_seq_one_letter_code_can ;MEFLKRSFAPLTEKQWQEIDNRAREIFKTQLYGRKFVDVEGPYGWEYAAHPLGEVEVLSDENEVVKWGLRKSLPLIELRA TFTLDLWELDNLERGKPNVDLSSLEETVRKVAEFEDEVIFRGCEKSGVKGLLSFEERKIECGSTPKDLLEAIVRALSIFS KDGIEGPYTLVINTDRWINFLGGEKRVEECLRGGKIITTPRIEDALVVSERGGDFKLILGQDLSIGYEDREKDAVRLFIT ETFTFQVVNPEALILLKF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 PHE n 1 4 LEU n 1 5 LYS n 1 6 ARG n 1 7 SER n 1 8 PHE n 1 9 ALA n 1 10 PRO n 1 11 LEU n 1 12 THR n 1 13 GLU n 1 14 LYS n 1 15 GLN n 1 16 TRP n 1 17 GLN n 1 18 GLU n 1 19 ILE n 1 20 ASP n 1 21 ASN n 1 22 ARG n 1 23 ALA n 1 24 ARG n 1 25 GLU n 1 26 ILE n 1 27 PHE n 1 28 LYS n 1 29 THR n 1 30 GLN n 1 31 LEU n 1 32 TYR n 1 33 GLY n 1 34 ARG n 1 35 LYS n 1 36 PHE n 1 37 VAL n 1 38 ASP n 1 39 VAL n 1 40 GLU n 1 41 GLY n 1 42 PRO n 1 43 TYR n 1 44 GLY n 1 45 TRP n 1 46 GLU n 1 47 TYR n 1 48 ALA n 1 49 ALA n 1 50 HIS n 1 51 PRO n 1 52 LEU n 1 53 GLY n 1 54 GLU n 1 55 VAL n 1 56 GLU n 1 57 VAL n 1 58 LEU n 1 59 SER n 1 60 ASP n 1 61 GLU n 1 62 ASN n 1 63 GLU n 1 64 VAL n 1 65 VAL n 1 66 LYS n 1 67 TRP n 1 68 GLY n 1 69 LEU n 1 70 ARG n 1 71 LYS n 1 72 SER n 1 73 LEU n 1 74 PRO n 1 75 LEU n 1 76 ILE n 1 77 GLU n 1 78 LEU n 1 79 ARG n 1 80 ALA n 1 81 THR n 1 82 PHE n 1 83 THR n 1 84 LEU n 1 85 ASP n 1 86 LEU n 1 87 TRP n 1 88 GLU n 1 89 LEU n 1 90 ASP n 1 91 ASN n 1 92 LEU n 1 93 GLU n 1 94 ARG n 1 95 GLY n 1 96 LYS n 1 97 PRO n 1 98 ASN n 1 99 VAL n 1 100 ASP n 1 101 LEU n 1 102 SER n 1 103 SER n 1 104 LEU n 1 105 GLU n 1 106 GLU n 1 107 THR n 1 108 VAL n 1 109 ARG n 1 110 LYS n 1 111 VAL n 1 112 ALA n 1 113 GLU n 1 114 PHE n 1 115 GLU n 1 116 ASP n 1 117 GLU n 1 118 VAL n 1 119 ILE n 1 120 PHE n 1 121 ARG n 1 122 GLY n 1 123 CYS n 1 124 GLU n 1 125 LYS n 1 126 SER n 1 127 GLY n 1 128 VAL n 1 129 LYS n 1 130 GLY n 1 131 LEU n 1 132 LEU n 1 133 SER n 1 134 PHE n 1 135 GLU n 1 136 GLU n 1 137 ARG n 1 138 LYS n 1 139 ILE n 1 140 GLU n 1 141 CYS n 1 142 GLY n 1 143 SER n 1 144 THR n 1 145 PRO n 1 146 LYS n 1 147 ASP n 1 148 LEU n 1 149 LEU n 1 150 GLU n 1 151 ALA n 1 152 ILE n 1 153 VAL n 1 154 ARG n 1 155 ALA n 1 156 LEU n 1 157 SER n 1 158 ILE n 1 159 PHE n 1 160 SER n 1 161 LYS n 1 162 ASP n 1 163 GLY n 1 164 ILE n 1 165 GLU n 1 166 GLY n 1 167 PRO n 1 168 TYR n 1 169 THR n 1 170 LEU n 1 171 VAL n 1 172 ILE n 1 173 ASN n 1 174 THR n 1 175 ASP n 1 176 ARG n 1 177 TRP n 1 178 ILE n 1 179 ASN n 1 180 PHE n 1 181 LEU n 1 182 GLY n 1 183 GLY n 1 184 GLU n 1 185 LYS n 1 186 ARG n 1 187 VAL n 1 188 GLU n 1 189 GLU n 1 190 CYS n 1 191 LEU n 1 192 ARG n 1 193 GLY n 1 194 GLY n 1 195 LYS n 1 196 ILE n 1 197 ILE n 1 198 THR n 1 199 THR n 1 200 PRO n 1 201 ARG n 1 202 ILE n 1 203 GLU n 1 204 ASP n 1 205 ALA n 1 206 LEU n 1 207 VAL n 1 208 VAL n 1 209 SER n 1 210 GLU n 1 211 ARG n 1 212 GLY n 1 213 GLY n 1 214 ASP n 1 215 PHE n 1 216 LYS n 1 217 LEU n 1 218 ILE n 1 219 LEU n 1 220 GLY n 1 221 GLN n 1 222 ASP n 1 223 LEU n 1 224 SER n 1 225 ILE n 1 226 GLY n 1 227 TYR n 1 228 GLU n 1 229 ASP n 1 230 ARG n 1 231 GLU n 1 232 LYS n 1 233 ASP n 1 234 ALA n 1 235 VAL n 1 236 ARG n 1 237 LEU n 1 238 PHE n 1 239 ILE n 1 240 THR n 1 241 GLU n 1 242 THR n 1 243 PHE n 1 244 THR n 1 245 PHE n 1 246 GLN n 1 247 VAL n 1 248 VAL n 1 249 ASN n 1 250 PRO n 1 251 GLU n 1 252 ALA n 1 253 LEU n 1 254 ILE n 1 255 LEU n 1 256 LEU n 1 257 LYS n 1 258 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 258 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene TM_0785 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 43589 / MSB8 / DSM 3109 / JCM 10099' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 243274 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MARIT_THEMA _struct_ref.pdbx_db_accession Q9WZP2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEFLKRSFAPLTEKQWQEIDNRAREIFKTQLYGRKFVDVEGPYGWEYAAHPLGEVEVLSDENEVVKWGLRKSLPLIELRA TFTLDLWELDNLERGKPNVDLSSLEETVRKVAEFEDEVIFRGCEKSGVKGLLSFEERKIECGSTPKDLLEAIVRALSIFS KDGIEGPYTLVINTDRWINFLKEEAGHYPLEKRVEECLRGGKIITTPRIEDALVVSERGGDFKLILGQDLSIGYEDREKD AVRLFITETFTFQVVNPEALILLKF ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7LIT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 258 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9WZP2 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 265 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 258 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7LIT GLY A 182 ? UNP Q9WZP2 LYS 182 'engineered mutation' 182 1 1 7LIT ? A ? ? UNP Q9WZP2 GLU 183 deletion ? 2 1 7LIT ? A ? ? UNP Q9WZP2 GLU 184 deletion ? 3 1 7LIT ? A ? ? UNP Q9WZP2 ALA 185 deletion ? 4 1 7LIT ? A ? ? UNP Q9WZP2 GLY 186 deletion ? 5 1 7LIT ? A ? ? UNP Q9WZP2 HIS 187 deletion ? 6 1 7LIT ? A ? ? UNP Q9WZP2 TYR 188 deletion ? 7 1 7LIT ? A ? ? UNP Q9WZP2 PRO 189 deletion ? 8 1 7LIT GLY A 183 ? UNP Q9WZP2 LEU 190 'engineered mutation' 183 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RBF non-polymer . RIBOFLAVIN 'RIBOFLAVINE; VITAMIN B2' 'C17 H20 N4 O6' 376.364 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7LIT _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7LIT _struct.title 'Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S7G' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7LIT _struct_keywords.text 'Encapsulin, Nanocompartment, VIRUS LIKE PARTICLE' _struct_keywords.pdbx_keywords 'VIRUS LIKE PARTICLE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LYS A 5 ? ALA A 9 ? LYS A 5 ALA A 9 5 ? 5 HELX_P HELX_P2 AA2 THR A 12 ? LEU A 31 ? THR A 12 LEU A 31 1 ? 20 HELX_P HELX_P3 AA3 TYR A 32 ? PHE A 36 ? TYR A 32 PHE A 36 5 ? 5 HELX_P HELX_P4 AA4 LEU A 86 ? GLY A 95 ? LEU A 86 GLY A 95 1 ? 10 HELX_P HELX_P5 AA5 LEU A 101 ? GLY A 122 ? LEU A 101 GLY A 122 1 ? 22 HELX_P HELX_P6 AA6 GLY A 130 ? PHE A 134 ? GLY A 130 PHE A 134 5 ? 5 HELX_P HELX_P7 AA7 THR A 144 ? GLY A 163 ? THR A 144 GLY A 163 1 ? 20 HELX_P HELX_P8 AA8 THR A 174 ? PHE A 180 ? THR A 174 PHE A 180 1 ? 7 HELX_P HELX_P9 AA9 GLY A 183 ? LEU A 191 ? GLY A 183 LEU A 191 1 ? 9 HELX_P HELX_P10 AB1 ASN A 249 ? GLU A 251 ? ASN A 249 GLU A 251 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASP A 38 ? GLU A 40 ? ASP A 38 GLU A 40 AA1 2 PHE A 215 ? ARG A 230 ? PHE A 215 ARG A 230 AA1 3 ALA A 234 ? VAL A 247 ? ALA A 234 VAL A 247 AA1 4 ILE A 76 ? ASP A 85 ? ILE A 76 ASP A 85 AA2 1 ALA A 49 ? VAL A 57 ? ALA A 49 VAL A 57 AA2 2 GLY A 68 ? PRO A 74 ? GLY A 68 PRO A 74 AA3 1 LYS A 138 ? GLU A 140 ? LYS A 138 GLU A 140 AA3 2 LEU A 253 ? LYS A 257 ? LEU A 253 LYS A 257 AA3 3 ALA A 205 ? SER A 209 ? ALA A 205 SER A 209 AA3 4 TYR A 168 ? ASN A 173 ? TYR A 168 ASN A 173 AA3 5 LYS A 195 ? THR A 199 ? LYS A 195 THR A 199 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 40 ? N GLU A 40 O LEU A 217 ? O LEU A 217 AA1 2 3 N LYS A 216 ? N LYS A 216 O GLN A 246 ? O GLN A 246 AA1 3 4 O PHE A 243 ? O PHE A 243 N ILE A 76 ? N ILE A 76 AA2 1 2 N LEU A 52 ? N LEU A 52 O LYS A 71 ? O LYS A 71 AA3 1 2 N ILE A 139 ? N ILE A 139 O LEU A 255 ? O LEU A 255 AA3 2 3 O ILE A 254 ? O ILE A 254 N VAL A 207 ? N VAL A 207 AA3 3 4 O LEU A 206 ? O LEU A 206 N VAL A 171 ? N VAL A 171 AA3 4 5 N LEU A 170 ? N LEU A 170 O ILE A 197 ? O ILE A 197 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id RBF _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'binding site for residue RBF A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 TRP A 87 ? TRP A 87 . ? 1_555 ? 2 AC1 3 ASP A 90 ? ASP A 90 . ? 1_555 ? 3 AC1 3 ARG A 94 ? ARG A 94 . ? 1_555 ? # _atom_sites.entry_id 7LIT _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 TRP 16 16 16 TRP TRP A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 TYR 32 32 32 TYR TYR A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 TYR 43 43 43 TYR TYR A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 TRP 45 45 45 TRP TRP A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 TRP 67 67 67 TRP TRP A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 PRO 74 74 74 PRO PRO A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 TRP 87 87 87 TRP TRP A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 ARG 94 94 94 ARG ARG A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 PHE 120 120 120 PHE PHE A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 CYS 123 123 123 CYS CYS A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 LYS 125 125 125 LYS LYS A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 VAL 128 128 128 VAL VAL A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 PHE 134 134 134 PHE PHE A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 GLU 136 136 136 GLU GLU A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 GLU 140 140 140 GLU GLU A . n A 1 141 CYS 141 141 141 CYS CYS A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 SER 143 143 143 SER SER A . n A 1 144 THR 144 144 144 THR THR A . n A 1 145 PRO 145 145 145 PRO PRO A . n A 1 146 LYS 146 146 146 LYS LYS A . n A 1 147 ASP 147 147 147 ASP ASP A . n A 1 148 LEU 148 148 148 LEU LEU A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 GLU 150 150 150 GLU GLU A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 VAL 153 153 153 VAL VAL A . n A 1 154 ARG 154 154 154 ARG ARG A . n A 1 155 ALA 155 155 155 ALA ALA A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 SER 157 157 157 SER SER A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 PHE 159 159 159 PHE PHE A . n A 1 160 SER 160 160 160 SER SER A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 ASP 162 162 162 ASP ASP A . n A 1 163 GLY 163 163 163 GLY GLY A . n A 1 164 ILE 164 164 164 ILE ILE A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 GLY 166 166 166 GLY GLY A . n A 1 167 PRO 167 167 167 PRO PRO A . n A 1 168 TYR 168 168 168 TYR TYR A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 ASN 173 173 173 ASN ASN A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 ARG 176 176 176 ARG ARG A . n A 1 177 TRP 177 177 177 TRP TRP A . n A 1 178 ILE 178 178 178 ILE ILE A . n A 1 179 ASN 179 179 179 ASN ASN A . n A 1 180 PHE 180 180 180 PHE PHE A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 GLY 183 183 183 GLY GLY A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 LYS 185 185 185 LYS LYS A . n A 1 186 ARG 186 186 186 ARG ARG A . n A 1 187 VAL 187 187 187 VAL VAL A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 GLU 189 189 189 GLU GLU A . n A 1 190 CYS 190 190 190 CYS CYS A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 ARG 192 192 192 ARG ARG A . n A 1 193 GLY 193 193 193 GLY GLY A . n A 1 194 GLY 194 194 194 GLY GLY A . n A 1 195 LYS 195 195 195 LYS LYS A . n A 1 196 ILE 196 196 196 ILE ILE A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 THR 198 198 198 THR THR A . n A 1 199 THR 199 199 199 THR THR A . n A 1 200 PRO 200 200 200 PRO PRO A . n A 1 201 ARG 201 201 201 ARG ARG A . n A 1 202 ILE 202 202 202 ILE ILE A . n A 1 203 GLU 203 203 203 GLU GLU A . n A 1 204 ASP 204 204 204 ASP ASP A . n A 1 205 ALA 205 205 205 ALA ALA A . n A 1 206 LEU 206 206 206 LEU LEU A . n A 1 207 VAL 207 207 207 VAL VAL A . n A 1 208 VAL 208 208 208 VAL VAL A . n A 1 209 SER 209 209 209 SER SER A . n A 1 210 GLU 210 210 210 GLU GLU A . n A 1 211 ARG 211 211 211 ARG ARG A . n A 1 212 GLY 212 212 212 GLY GLY A . n A 1 213 GLY 213 213 213 GLY GLY A . n A 1 214 ASP 214 214 214 ASP ASP A . n A 1 215 PHE 215 215 215 PHE PHE A . n A 1 216 LYS 216 216 216 LYS LYS A . n A 1 217 LEU 217 217 217 LEU LEU A . n A 1 218 ILE 218 218 218 ILE ILE A . n A 1 219 LEU 219 219 219 LEU LEU A . n A 1 220 GLY 220 220 220 GLY GLY A . n A 1 221 GLN 221 221 221 GLN GLN A . n A 1 222 ASP 222 222 222 ASP ASP A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 SER 224 224 224 SER SER A . n A 1 225 ILE 225 225 225 ILE ILE A . n A 1 226 GLY 226 226 226 GLY GLY A . n A 1 227 TYR 227 227 227 TYR TYR A . n A 1 228 GLU 228 228 228 GLU GLU A . n A 1 229 ASP 229 229 229 ASP ASP A . n A 1 230 ARG 230 230 230 ARG ARG A . n A 1 231 GLU 231 231 231 GLU GLU A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 ASP 233 233 233 ASP ASP A . n A 1 234 ALA 234 234 234 ALA ALA A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 ARG 236 236 236 ARG ARG A . n A 1 237 LEU 237 237 237 LEU LEU A . n A 1 238 PHE 238 238 238 PHE PHE A . n A 1 239 ILE 239 239 239 ILE ILE A . n A 1 240 THR 240 240 240 THR THR A . n A 1 241 GLU 241 241 241 GLU GLU A . n A 1 242 THR 242 242 242 THR THR A . n A 1 243 PHE 243 243 243 PHE PHE A . n A 1 244 THR 244 244 244 THR THR A . n A 1 245 PHE 245 245 245 PHE PHE A . n A 1 246 GLN 246 246 246 GLN GLN A . n A 1 247 VAL 247 247 247 VAL VAL A . n A 1 248 VAL 248 248 248 VAL VAL A . n A 1 249 ASN 249 249 249 ASN ASN A . n A 1 250 PRO 250 250 250 PRO PRO A . n A 1 251 GLU 251 251 251 GLU GLU A . n A 1 252 ALA 252 252 252 ALA ALA A . n A 1 253 LEU 253 253 253 LEU LEU A . n A 1 254 ILE 254 254 254 ILE ILE A . n A 1 255 LEU 255 255 255 LEU LEU A . n A 1 256 LEU 256 256 256 LEU LEU A . n A 1 257 LYS 257 257 257 LYS LYS A . n A 1 258 PHE 258 258 258 PHE PHE A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id RBF _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 297 _pdbx_nonpoly_scheme.pdb_mon_id RBF _pdbx_nonpoly_scheme.auth_mon_id RBF _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'complete icosahedral assembly' ? 60-meric 60 2 'icosahedral asymmetric unit' ? monomeric 1 3 'icosahedral pentamer' ? pentameric 5 4 'icosahedral 23 hexamer' ? hexameric 6 5 'icosahedral asymmetric unit, std point frame' ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-60)' A,B 2 1 A,B 3 '(1-5)' A,B 4 '(1,2,6,10,23,24)' A,B 5 P A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.50000066 0.30901833 0.80901608 -117.00139 -0.30901547 0.80901686 -0.50000116 -0.00030 -0.80901717 -0.49999939 -0.30901752 306.31318 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'point symmetry operation' ? ? 0.80901623 0.50000074 0.30901781 -117.00155 -0.50000127 0.30901700 0.80901621 72.31117 0.30901695 -0.80901653 0.50000077 189.31203 3 'point symmetry operation' ? ? 0.49999799 0.30901692 0.80901826 -117.00128 -0.30901830 -0.80901699 0.49999919 306.31398 0.80901774 -0.50000004 -0.30901499 189.31179 4 'point symmetry operation' ? ? 0.49999799 -0.30901830 0.80901774 0.00044 0.30901693 -0.80901700 -0.50000004 378.62449 0.80901826 0.49999919 -0.30901499 -0.00039 5 'point symmetry operation' ? ? 0.80901623 -0.50000127 0.30901695 72.31121 0.50000074 0.30901699 -0.80901654 189.31204 0.30901780 0.80901621 0.50000077 -117.00151 6 'point symmetry operation' ? ? 0.30901756 0.80901618 0.50000096 -117.00173 0.80901619 -0.50000122 0.30901714 72.31163 0.50000096 0.30901714 -0.80901635 189.31171 7 'point symmetry operation' ? ? -0.00000012 -0.00000028 1.00000000 -0.00016 1.00000000 -0.00000016 0.00000012 0.00047 0.00000016 1.00000000 0.00000028 -0.00031 8 'point symmetry operation' ? ? 0.30901700 -0.80901668 0.50000050 189.31186 0.80901635 0.50000059 0.30901774 -117.00107 -0.50000105 0.30901684 0.80901640 72.31090 9 'point symmetry operation' ? ? 0.80901776 -0.49999985 -0.30901523 189.31155 0.49999814 0.30901699 0.80901815 -117.00084 -0.30901799 -0.80901708 0.49999923 306.31370 10 'point symmetry operation' ? ? 0.80901811 0.49999945 -0.30901494 -0.00066 0.49999804 -0.30901811 0.80901778 0.00085 0.30901724 -0.80901690 -0.50000000 378.62418 11 'point symmetry operation' ? ? -0.80901888 -0.49999745 0.30901618 378.62370 -0.49999745 0.30901656 -0.80901874 378.62396 0.30901619 -0.80901873 -0.49999768 378.62429 12 'point symmetry operation' ? ? -0.30901880 -0.80901695 -0.49999895 495.62524 -0.80901523 0.50000181 -0.30901870 306.31281 0.50000174 0.30901417 -0.80901699 189.31225 13 'point symmetry operation' ? ? 0.00000012 -0.00000220 -1.00000000 378.62415 -1.00000000 0.00000208 -0.00000012 378.62361 0.00000208 1.00000000 -0.00000220 -0.00020 14 'point symmetry operation' ? ? -0.30901576 0.80901592 -0.50000251 189.31195 -0.80901730 -0.50000000 -0.30901619 495.62529 -0.50000027 0.30901981 0.80901575 72.31031 15 'point symmetry operation' ? ? -0.80901700 0.50000186 0.30901399 189.31167 -0.49999873 -0.30901854 -0.80901719 495.62550 -0.30901904 -0.80901525 0.50000155 306.31311 16 'point symmetry operation' ? ? -0.49999868 -0.30901874 -0.80901714 495.62506 -0.30901874 -0.80901534 0.50000159 306.31329 -0.80901714 0.50000159 0.30901403 189.31198 17 'point symmetry operation' ? ? -0.49999730 0.30901649 -0.80901886 378.62350 0.30901650 -0.80901864 -0.49999764 378.62443 -0.80901885 -0.49999764 0.30901594 378.62401 18 'point symmetry operation' ? ? -0.80901511 0.50000196 -0.30901876 306.31231 0.50000196 0.30901432 -0.80901681 189.31237 -0.30901876 -0.80901680 -0.49999922 495.62549 19 'point symmetry operation' ? ? -1.00000000 0.00000224 0.00000000 378.62309 0.00000223 1.00000000 -0.00000192 -0.00006 0.00000000 -0.00000192 -1.00000000 378.62435 20 'point symmetry operation' ? ? -0.80901735 -0.50000005 -0.30901599 495.62481 -0.50000005 0.30901966 0.80901595 72.31049 -0.30901599 0.80901594 -0.50000232 189.31219 21 'point symmetry operation' ? ? 0.80901588 -0.49999995 0.30902000 72.31045 -0.50000255 -0.30901588 0.80901585 189.31266 -0.30901579 -0.80901745 -0.50000000 495.62520 22 'point symmetry operation' ? ? 1.00000000 -0.00000224 0.00000248 -0.00005 -0.00000223 -1.00000000 0.00000000 378.62486 0.00000248 0.00000000 -1.00000000 378.62352 23 'point symmetry operation' ? ? 0.80901811 0.49999804 0.30901723 -117.00129 0.49999946 -0.30901811 -0.80901691 306.31395 -0.30901494 0.80901778 -0.50000000 189.31120 24 'point symmetry operation' ? ? 0.50000069 0.30901750 0.80901638 -117.00154 0.30901719 0.80901630 -0.50000100 72.31115 -0.80901649 0.50000081 0.30901700 189.31144 25 'point symmetry operation' ? ? 0.49999931 -0.30901525 0.80901809 -0.00045 -0.30901805 0.80901769 0.49999824 0.00037 -0.80901702 -0.49999996 0.30901699 378.62391 26 'point symmetry operation' ? ? 0.00000236 1.00000000 -0.00000208 -0.00052 0.00000028 -0.00000208 -1.00000000 378.62455 -1.00000000 0.00000236 -0.00000028 378.62336 27 'point symmetry operation' ? ? -0.50000000 0.30901986 0.80901590 72.30999 -0.30901569 0.80901604 -0.50000236 189.31234 -0.80901749 -0.49999978 -0.30901603 495.62503 28 'point symmetry operation' ? ? -0.30901880 -0.80901522 0.50000174 306.31279 -0.80901696 0.50000181 0.30901418 189.31210 -0.49999895 -0.30901869 -0.80901699 495.62531 29 'point symmetry operation' ? ? 0.30901643 -0.80901876 -0.49999749 378.62398 -0.80901876 -0.49999760 0.30901625 378.62416 -0.49999749 0.30901625 -0.80901883 378.62381 30 'point symmetry operation' ? ? 0.50000201 0.30901413 -0.80901685 189.31194 -0.30901861 -0.80901699 -0.49999900 495.62569 -0.80901513 0.50000177 -0.30901900 306.31263 31 'point symmetry operation' ? ? -0.30901823 -0.80901711 0.49999904 306.31355 0.80901765 -0.50000000 -0.30901530 189.31208 0.49999818 0.30901668 0.80901824 -117.00103 32 'point symmetry operation' ? ? 0.30901700 -0.80901688 -0.50000019 378.62402 0.80901807 0.49999941 -0.30901514 -0.00014 0.49999826 -0.30901826 0.80901759 0.00065 33 'point symmetry operation' ? ? 0.50000069 0.30901718 -0.80901649 189.31154 0.30901749 0.80901630 0.50000081 -117.00125 0.80901638 -0.50000100 0.30901699 72.31136 34 'point symmetry operation' ? ? -0.00000012 1.00000000 0.00000016 -0.00047 -0.00000028 -0.00000016 1.00000000 0.00031 1.00000000 0.00000012 0.00000028 0.00016 35 'point symmetry operation' ? ? -0.50000132 0.30901680 0.80901626 72.31075 0.30901680 -0.80901673 0.50000055 189.31236 0.80901625 0.50000055 0.30901804 -117.00133 36 'point symmetry operation' ? ? -0.50000000 0.30901706 -0.80901697 378.62355 -0.30901538 0.80901795 0.49999945 -0.00041 0.80901761 0.49999840 -0.30901795 0.00045 37 'point symmetry operation' ? ? -0.80901700 0.49999926 -0.30901819 306.31307 -0.50000015 -0.30901544 0.80901750 189.31181 0.30901675 0.80901804 0.49999845 -117.00122 38 'point symmetry operation' ? ? -1.00000000 0.00000000 -0.00000248 378.62398 0.00000000 -1.00000000 0.00000192 378.62408 -0.00000248 0.00000192 1.00000000 0.00011 39 'point symmetry operation' ? ? -0.80901699 -0.49999873 -0.30901905 495.62507 0.50000186 -0.30901855 -0.80901526 306.31327 0.30901398 -0.80901718 0.50000155 189.31256 40 'point symmetry operation' ? ? -0.50000000 -0.30901568 -0.80901750 495.62480 0.30901985 0.80901603 -0.49999979 72.31046 0.80901590 -0.50000236 -0.30901604 189.31277 41 'point symmetry operation' ? ? 0.80901588 -0.50000255 -0.30901580 189.31253 -0.49999995 -0.30901588 -0.80901746 495.62528 0.30902000 0.80901584 -0.50000000 72.31029 42 'point symmetry operation' ? ? 0.80901776 0.49999814 -0.30901800 0.00024 -0.49999985 0.30901699 -0.80901709 378.62402 -0.30901523 0.80901814 0.49999923 -0.00066 43 'point symmetry operation' ? ? 0.30901699 0.80901807 0.49999826 -117.00147 -0.80901688 0.49999941 -0.30901826 306.31349 -0.50000019 -0.30901513 0.80901759 189.31152 44 'point symmetry operation' ? ? -0.00000236 0.00000220 1.00000000 -0.00021 -1.00000000 0.00000016 -0.00000236 378.62439 -0.00000016 -1.00000000 0.00000220 378.62383 45 'point symmetry operation' ? ? 0.30901394 -0.80901704 0.50000182 189.31226 -0.80901704 -0.49999878 -0.30901885 495.62551 0.50000182 -0.30901885 -0.80901516 306.31309 46 'point symmetry operation' ? ? -0.30901824 0.80901764 0.49999818 -0.00004 -0.80901711 -0.50000000 0.30901669 378.62422 0.49999904 -0.30901529 0.80901824 -0.00019 47 'point symmetry operation' ? ? -0.50000270 -0.30901594 0.80901573 189.31226 -0.30901594 -0.80901726 -0.50000022 495.62546 0.80901573 -0.50000022 0.30901996 72.31077 48 'point symmetry operation' ? ? -0.00000236 -1.00000000 -0.00000016 378.62445 0.00000220 0.00000016 -1.00000000 378.62377 1.00000000 -0.00000236 0.00000220 0.00027 49 'point symmetry operation' ? ? 0.49999931 -0.30901804 -0.80901702 306.31353 -0.30901525 0.80901769 -0.49999996 189.31150 0.80901809 0.49999823 0.30901699 -117.00104 50 'point symmetry operation' ? ? 0.30901699 0.80901634 -0.50000105 72.31072 -0.80901669 0.50000059 0.30901685 189.31177 0.50000050 0.30901773 0.80901640 -117.00132 51 'point symmetry operation' ? ? -0.50000000 -0.30901537 0.80901761 189.31128 0.30901706 0.80901795 0.49999841 -117.00102 -0.80901697 0.49999945 -0.30901795 306.31322 52 'point symmetry operation' ? ? 0.00000012 -1.00000000 0.00000208 378.62356 -0.00000220 0.00000208 1.00000000 0.00025 -1.00000000 -0.00000012 -0.00000220 378.62419 53 'point symmetry operation' ? ? 0.50000201 -0.30901862 -0.80901514 306.31277 0.30901414 -0.80901699 0.50000177 189.31268 -0.80901684 -0.49999900 -0.30901900 495.62532 54 'point symmetry operation' ? ? 0.30902005 0.80901599 -0.49999973 72.30996 0.80901600 -0.50000240 -0.30901573 189.31293 -0.49999973 -0.30901573 -0.80901764 495.62502 55 'point symmetry operation' ? ? -0.30901519 0.80901799 0.49999950 -0.00093 0.80901780 0.49999819 -0.30901780 0.00065 -0.49999981 0.30901730 -0.80901699 378.62371 56 'point symmetry operation' ? ? 0.00000236 0.00000028 -1.00000000 378.62325 1.00000000 -0.00000208 0.00000236 0.00041 -0.00000208 -1.00000000 -0.00000028 378.62466 57 'point symmetry operation' ? ? -0.30901518 0.80901780 -0.49999981 189.31097 0.80901800 0.49999819 0.30901730 -117.00085 0.49999950 -0.30901780 -0.80901700 306.31368 58 'point symmetry operation' ? ? -0.80901664 0.50000054 0.30901704 189.31127 0.50000054 0.30901743 0.80901650 -117.00106 0.30901703 0.80901649 -0.50000078 72.31087 59 'point symmetry operation' ? ? -0.80901699 -0.50000015 0.30901676 378.62375 0.49999926 -0.30901544 0.80901805 0.00006 -0.30901820 0.80901749 0.49999845 0.00017 60 'point symmetry operation' ? ? -0.30901575 -0.80901730 -0.50000027 495.62498 0.80901592 -0.50000000 0.30901981 72.31095 -0.50000251 -0.30901618 0.80901575 189.31250 # _pdbx_point_symmetry.entry_id 7LIT _pdbx_point_symmetry.Schoenflies_symbol I # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-09 2 'Structure model' 1 1 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' # _pdbx_entry_details.entry_id 7LIT _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.entry_id 7LIT _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 61.68 _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range 1-265 _em_3d_fitting_list.pdb_entry_id 3DKT # _em_3d_reconstruction.entry_id 7LIT _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 90905 _em_3d_reconstruction.resolution 2.53 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Thermotoga maratima encapsulin pore mutant with K182G, L190G, and deletion of amino acids K182-P189' _em_entity_assembly.name 'Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S7G' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 7LIT _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 40 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 7LIT _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'TFS TALOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max -2500 _em_imaging.nominal_defocus_min -1000 _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type C-flat-2/2 _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'blot force 0, wait time 30 seconds' _em_vitrification.humidity 95 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7LIT _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7LIT _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7LIT _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry I # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 204 ? ? -126.18 -164.59 2 1 GLU A 228 ? ? -101.92 -60.99 3 1 LYS A 232 ? ? 69.52 -23.18 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 100 mM NaCl 'Sodium Chloride' 1 2 20 mM C4H11NO3 Tris # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 1.796591 # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 243274 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Thermotoga maritima MSB8' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.average_exposure_time 47.84 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? cryoSPARC 2.15.0 1 ? ? 2 'IMAGE ACQUISITION' ? Leginon ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? cryoSPARC 2.15.0 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 8 'MODEL FITTING' ? Coot 0.9 ? 1 ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? cryoSPARC 2.15.0 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? cryoSPARC 2.15.0 1 ? ? 12 CLASSIFICATION ? ? ? 1 ? ? 13 RECONSTRUCTION ? cryoSPARC 2.15.0 1 ? ? 14 'MODEL REFINEMENT' ? PHENIX 1.18.2-3874-000 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 2.0 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Australian Research Council (ARC)' Australia DE190100624 1 'Other private' Australia WRF2020 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM133325 3 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name RIBOFLAVIN _pdbx_entity_nonpoly.comp_id RBF # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 'gel filtration' ? 2 1 microscopy ? 3 1 'light scattering' ? #