HEADER SUGAR BINDING PROTEIN 29-JAN-21 7LJG TITLE CRYSTAL STRUCTURE OF LECTIN FROM DIOCLEA ALTISSIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DIOCLEA VIOLACEA; SOURCE 3 ORGANISM_TAXID: 192415 KEYWDS LECTIN, DIOCLEA ALTISSIMA, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.E.VIEIRA-NETO,H.M.PEREIRA,F.D.SOUSA,N.G.G.GONCALVES,N.C.G.VIEIRA, AUTHOR 2 A.C.O.MONTEIRO-MOREIRA,R.A.MOEREIRA REVDAT 2 18-OCT-23 7LJG 1 REMARK REVDAT 1 09-FEB-22 7LJG 0 JRNL AUTH A.E.VIEIRA-NETO,H.M.PEREIRA,F.D.SOUSA,N.G.G.GONCALVES, JRNL AUTH 2 N.C.G.VIEIRA,A.C.O.MONTEIRO-MOREIRA,R.A.MOEREIRA JRNL TITL CRYSTAL STRUCTURE OF LECTIN FROM DIOCLEA ALTISSIMA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 24890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.3180 - 4.5968 1.00 2845 133 0.2297 0.2644 REMARK 3 2 4.5968 - 3.6487 1.00 2662 151 0.1730 0.1832 REMARK 3 3 3.6487 - 3.1875 1.00 2650 139 0.1780 0.1989 REMARK 3 4 3.1875 - 2.8961 1.00 2630 130 0.2103 0.2915 REMARK 3 5 2.8961 - 2.6885 0.99 2599 142 0.2211 0.2664 REMARK 3 6 2.6885 - 2.5300 0.99 2601 130 0.2527 0.3143 REMARK 3 7 2.5300 - 2.4033 0.99 2531 159 0.2731 0.3216 REMARK 3 8 2.4033 - 2.2987 0.98 2558 150 0.2751 0.2983 REMARK 3 9 2.2987 - 2.2102 0.98 2524 156 0.2942 0.3127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6494 31.6644 -4.0684 REMARK 3 T TENSOR REMARK 3 T11: 0.3453 T22: 0.3707 REMARK 3 T33: 0.2010 T12: -0.0638 REMARK 3 T13: -0.0067 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.7054 L22: 2.7251 REMARK 3 L33: 2.0532 L12: -0.2421 REMARK 3 L13: -0.2328 L23: 0.7613 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: -0.2662 S13: 0.1522 REMARK 3 S21: 0.2368 S22: -0.0488 S23: -0.1454 REMARK 3 S31: -0.1935 S32: 0.2053 S33: 0.0383 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9641 24.2457 -13.5988 REMARK 3 T TENSOR REMARK 3 T11: 0.2252 T22: 0.2390 REMARK 3 T33: 0.2100 T12: -0.0647 REMARK 3 T13: -0.0206 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 2.0804 L22: 3.4550 REMARK 3 L33: 3.3242 L12: -0.2247 REMARK 3 L13: 0.2620 L23: 0.7637 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: -0.0065 S13: 0.0338 REMARK 3 S21: -0.2248 S22: -0.0871 S23: 0.2907 REMARK 3 S31: -0.1882 S32: -0.2663 S33: 0.0716 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4633 32.8883 -10.4120 REMARK 3 T TENSOR REMARK 3 T11: 0.4386 T22: 0.5087 REMARK 3 T33: 0.4290 T12: 0.0905 REMARK 3 T13: -0.0346 T23: -0.1419 REMARK 3 L TENSOR REMARK 3 L11: 2.6297 L22: 4.3467 REMARK 3 L33: 2.4169 L12: 1.3538 REMARK 3 L13: 0.2447 L23: 1.5461 REMARK 3 S TENSOR REMARK 3 S11: 0.1285 S12: -0.1444 S13: 0.4596 REMARK 3 S21: -0.3312 S22: -0.1873 S23: 0.8236 REMARK 3 S31: -1.0022 S32: -1.2354 S33: 0.2121 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7307 14.0227 -8.9568 REMARK 3 T TENSOR REMARK 3 T11: 0.3173 T22: 0.2582 REMARK 3 T33: 0.3107 T12: -0.0786 REMARK 3 T13: -0.0210 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 6.8310 L22: 2.5964 REMARK 3 L33: 5.2910 L12: 0.2328 REMARK 3 L13: -3.9094 L23: 2.6772 REMARK 3 S TENSOR REMARK 3 S11: -0.2321 S12: -0.2444 S13: -1.0812 REMARK 3 S21: 0.4088 S22: 0.0343 S23: -0.0679 REMARK 3 S31: 0.2861 S32: 0.1591 S33: 0.2822 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1196 30.1866 -13.4814 REMARK 3 T TENSOR REMARK 3 T11: 0.2323 T22: 0.2694 REMARK 3 T33: 0.2351 T12: -0.0715 REMARK 3 T13: -0.0018 T23: -0.0484 REMARK 3 L TENSOR REMARK 3 L11: 9.3798 L22: 3.5766 REMARK 3 L33: 3.3076 L12: -5.5723 REMARK 3 L13: -1.2069 L23: 0.4048 REMARK 3 S TENSOR REMARK 3 S11: 0.3914 S12: -0.1614 S13: 0.1624 REMARK 3 S21: -1.0584 S22: 0.0420 S23: -0.1441 REMARK 3 S31: -0.2282 S32: -0.0601 S33: -0.4244 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7789 28.6160 0.3866 REMARK 3 T TENSOR REMARK 3 T11: 0.4373 T22: 0.4523 REMARK 3 T33: 0.2450 T12: -0.0616 REMARK 3 T13: 0.0712 T23: -0.0562 REMARK 3 L TENSOR REMARK 3 L11: 2.3314 L22: 0.2671 REMARK 3 L33: 3.1710 L12: -0.0797 REMARK 3 L13: 1.1636 L23: -0.7672 REMARK 3 S TENSOR REMARK 3 S11: -0.0941 S12: -0.3366 S13: -0.0360 REMARK 3 S21: 0.6392 S22: -0.4497 S23: 0.1543 REMARK 3 S31: -0.2526 S32: -0.2904 S33: 0.3920 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7178 17.5307 -18.2344 REMARK 3 T TENSOR REMARK 3 T11: 0.2737 T22: 0.5115 REMARK 3 T33: 0.4343 T12: 0.0218 REMARK 3 T13: -0.0405 T23: 0.1408 REMARK 3 L TENSOR REMARK 3 L11: 3.8576 L22: 2.2996 REMARK 3 L33: 2.6759 L12: -1.0130 REMARK 3 L13: 0.2397 L23: 1.5032 REMARK 3 S TENSOR REMARK 3 S11: -0.1042 S12: -0.5328 S13: -0.3206 REMARK 3 S21: 0.3405 S22: 0.1580 S23: -0.6492 REMARK 3 S31: 0.1974 S32: 0.5863 S33: -0.0333 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2498 23.9861 -16.6639 REMARK 3 T TENSOR REMARK 3 T11: 0.2123 T22: 0.3541 REMARK 3 T33: 0.2938 T12: -0.0569 REMARK 3 T13: -0.0459 T23: 0.0634 REMARK 3 L TENSOR REMARK 3 L11: 2.9380 L22: 0.9914 REMARK 3 L33: 3.7578 L12: 0.0655 REMARK 3 L13: 0.0549 L23: 1.2422 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: -0.2363 S13: -0.2460 REMARK 3 S21: 0.2539 S22: 0.0356 S23: -0.0501 REMARK 3 S31: -0.1062 S32: 0.3859 S33: 0.0600 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2740 17.8052 -31.3268 REMARK 3 T TENSOR REMARK 3 T11: 0.1975 T22: 0.3357 REMARK 3 T33: 0.3345 T12: -0.0264 REMARK 3 T13: 0.0002 T23: 0.0246 REMARK 3 L TENSOR REMARK 3 L11: 2.5285 L22: 2.6943 REMARK 3 L33: 3.2969 L12: -0.3720 REMARK 3 L13: -0.0277 L23: 0.0393 REMARK 3 S TENSOR REMARK 3 S11: 0.0502 S12: 0.1813 S13: -0.3720 REMARK 3 S21: -0.1799 S22: 0.0003 S23: -0.1835 REMARK 3 S31: 0.0564 S32: 0.1761 S33: -0.0246 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2869 20.5307 -27.5760 REMARK 3 T TENSOR REMARK 3 T11: 0.2162 T22: 0.5850 REMARK 3 T33: 0.5065 T12: -0.0230 REMARK 3 T13: 0.0184 T23: 0.0377 REMARK 3 L TENSOR REMARK 3 L11: 3.2251 L22: 2.2276 REMARK 3 L33: 3.0803 L12: -1.3703 REMARK 3 L13: 0.2241 L23: 0.4469 REMARK 3 S TENSOR REMARK 3 S11: -0.1938 S12: -0.1090 S13: -0.1309 REMARK 3 S21: 0.3007 S22: 0.2164 S23: -0.6953 REMARK 3 S31: -0.3431 S32: 0.7530 S33: -0.0590 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LJG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1000253722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92821 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25094 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 161.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.20200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 3.42500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2JE9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM ACETATE PH4.6, 200MM REMARK 280 AMMONIUM SULPHATE, 25% PEG4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.93733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.96867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.96867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.93733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 442 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 120 REMARK 465 SER A 121 REMARK 465 ALA A 122 REMARK 465 SER A 163 REMARK 465 SER A 164 REMARK 465 GLY A 165 REMARK 465 ASP A 166 REMARK 465 PRO A 167 REMARK 465 GLN A 168 REMARK 465 ASN B 16 REMARK 465 THR B 17 REMARK 465 ASP B 18 REMARK 465 ILE B 19 REMARK 465 GLY B 20 REMARK 465 ASP B 21 REMARK 465 PRO B 22 REMARK 465 SER B 121 REMARK 465 ALA B 122 REMARK 465 SER B 162 REMARK 465 SER B 163 REMARK 465 SER B 164 REMARK 465 GLY B 165 REMARK 465 ASP B 166 REMARK 465 PRO B 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 SER A 187 OG REMARK 470 ARG A 206 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 ASP A 237 CG OD1 OD2 REMARK 470 TYR B 102 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 ASN B 120 CG OD1 ND2 REMARK 470 ASN B 138 CG OD1 ND2 REMARK 470 GLN B 168 CG CD OE1 NE2 REMARK 470 SER B 203 OG REMARK 470 ARG B 206 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 12 MN MN B 301 1.65 REMARK 500 O HOH A 401 O HOH A 458 1.80 REMARK 500 O PRO A 236 O HOH A 401 1.95 REMARK 500 OH TYR A 69 O HOH A 402 2.05 REMARK 500 O HOH B 401 O HOH B 412 2.09 REMARK 500 OD2 ASP B 194 O HOH B 401 2.11 REMARK 500 O HOH A 414 O HOH A 446 2.16 REMARK 500 O HOH B 403 O HOH B 416 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 101 47.06 -83.33 REMARK 500 SER A 187 46.62 -99.83 REMARK 500 THR B 119 -153.31 -115.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 10 OE2 REMARK 620 2 ASP A 12 OD2 98.1 REMARK 620 3 HIS A 26 NE2 89.1 98.3 REMARK 620 4 HOH A 409 O 89.6 97.8 163.9 REMARK 620 5 HOH A 422 O 88.3 170.8 88.4 75.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 10 OE2 REMARK 620 2 HIS B 26 NE2 91.6 REMARK 620 3 HOH B 413 O 88.4 169.5 REMARK 620 N 1 2 DBREF 7LJG A 3 239 UNP I1SB09 I1SB09_DIOVO 1 237 DBREF 7LJG B 3 239 UNP I1SB09 I1SB09_DIOVO 1 237 SEQADV 7LJG LYS A 92 UNP I1SB09 ARG 90 CONFLICT SEQADV 7LJG ALA A 125 UNP I1SB09 GLU 123 CONFLICT SEQADV 7LJG ASN A 133 UNP I1SB09 HIS 131 CONFLICT SEQADV 7LJG GLN A 157 UNP I1SB09 GLU 155 CONFLICT SEQADV 7LJG LYS B 92 UNP I1SB09 ARG 90 CONFLICT SEQADV 7LJG ALA B 125 UNP I1SB09 GLU 123 CONFLICT SEQADV 7LJG ASN B 133 UNP I1SB09 HIS 131 CONFLICT SEQADV 7LJG GLN B 157 UNP I1SB09 GLU 155 CONFLICT SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP SER TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO ASN TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER ILE ARG SER LYS SER THR ALA ARG SEQRES 4 A 237 TRP ASN MET GLN THR GLY LYS VAL GLY THR VAL HIS ILE SEQRES 5 A 237 SER TYR ASN SER VAL ALA LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR SER GLY SER SER SER THR THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASN ASN VAL LEU PRO GLU TRP VAL LYS VAL SEQRES 8 A 237 GLY LEU SER ALA THR THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS THR SEQRES 10 A 237 ASN SER ALA ALA ASP ALA ASN SER LEU HIS PHE SER PHE SEQRES 11 A 237 ASN LYS PHE SER GLN ASN PRO LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA PHE THR ASP SER ASP GLY ASN LEU GLN LEU SEQRES 13 A 237 THR LYS VAL SER SER SER GLY ASP PRO GLN GLY ASN SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU LYS SER ALA VAL VAL ALA SER PHE ASP ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP ARG GLU PRO ALA ASP SEQRES 17 A 237 GLY ILE THR PHE PHE ILE ALA ASN THR ASP THR SER ILE SEQRES 18 A 237 PRO SER GLY SER GLY GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN SEQRES 1 B 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP SER TYR PRO SEQRES 2 B 237 ASN THR ASP ILE GLY ASP PRO ASN TYR PRO HIS ILE GLY SEQRES 3 B 237 ILE ASP ILE LYS SER ILE ARG SER LYS SER THR ALA ARG SEQRES 4 B 237 TRP ASN MET GLN THR GLY LYS VAL GLY THR VAL HIS ILE SEQRES 5 B 237 SER TYR ASN SER VAL ALA LYS ARG LEU SER ALA VAL VAL SEQRES 6 B 237 SER TYR SER GLY SER SER SER THR THR VAL SER TYR ASP SEQRES 7 B 237 VAL ASP LEU ASN ASN VAL LEU PRO GLU TRP VAL LYS VAL SEQRES 8 B 237 GLY LEU SER ALA THR THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 B 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS THR SEQRES 10 B 237 ASN SER ALA ALA ASP ALA ASN SER LEU HIS PHE SER PHE SEQRES 11 B 237 ASN LYS PHE SER GLN ASN PRO LYS ASP LEU ILE LEU GLN SEQRES 12 B 237 GLY ASP ALA PHE THR ASP SER ASP GLY ASN LEU GLN LEU SEQRES 13 B 237 THR LYS VAL SER SER SER GLY ASP PRO GLN GLY ASN SER SEQRES 14 B 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 B 237 GLU LYS SER ALA VAL VAL ALA SER PHE ASP ALA THR PHE SEQRES 16 B 237 THR PHE LEU ILE LYS SER PRO ASP ARG GLU PRO ALA ASP SEQRES 17 B 237 GLY ILE THR PHE PHE ILE ALA ASN THR ASP THR SER ILE SEQRES 18 B 237 PRO SER GLY SER GLY GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 B 237 ASP ALA ASN HET MN A 301 1 HET MN B 301 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *109(H2 O) HELIX 1 AA1 ASP A 82 VAL A 86 5 5 HELIX 2 AA2 GLY A 228 LEU A 232 5 5 HELIX 3 AA3 ASP B 82 VAL B 86 5 5 HELIX 4 AA4 GLY B 228 LEU B 232 5 5 SHEET 1 AA1 7 SER A 38 ARG A 41 0 SHEET 2 AA1 7 HIS A 26 ILE A 31 -1 N ILE A 27 O ALA A 40 SHEET 3 AA1 7 ILE A 6 ASP A 12 -1 N ALA A 8 O ASP A 30 SHEET 4 AA1 7 ASP A 210 ASN A 218 -1 O ILE A 212 N LEU A 11 SHEET 5 AA1 7 TRP A 90 THR A 99 -1 N SER A 96 O THR A 213 SHEET 6 AA1 7 VAL A 172 PHE A 177 -1 O ALA A 175 N LEU A 95 SHEET 7 AA1 7 LEU A 142 GLY A 146 -1 N ILE A 143 O LEU A 176 SHEET 1 AA2 6 SER A 38 ARG A 41 0 SHEET 2 AA2 6 HIS A 26 ILE A 31 -1 N ILE A 27 O ALA A 40 SHEET 3 AA2 6 ILE A 6 ASP A 12 -1 N ALA A 8 O ASP A 30 SHEET 4 AA2 6 ASP A 210 ASN A 218 -1 O ILE A 212 N LEU A 11 SHEET 5 AA2 6 TRP A 90 THR A 99 -1 N SER A 96 O THR A 213 SHEET 6 AA2 6 VAL A 181 HIS A 182 -1 O VAL A 181 N VAL A 91 SHEET 1 AA3 6 THR A 75 ASP A 80 0 SHEET 2 AA3 6 ARG A 62 TYR A 69 -1 N ALA A 65 O VAL A 77 SHEET 3 AA3 6 VAL A 49 ASN A 57 -1 N SER A 55 O SER A 64 SHEET 4 AA3 6 VAL A 190 LYS A 202 -1 O PHE A 199 N GLY A 50 SHEET 5 AA3 6 THR A 105 LYS A 118 -1 N LYS A 116 O SER A 192 SHEET 6 AA3 6 ASN A 126 PHE A 132 -1 O PHE A 132 N TRP A 111 SHEET 1 AA4 7 THR A 75 ASP A 80 0 SHEET 2 AA4 7 ARG A 62 TYR A 69 -1 N ALA A 65 O VAL A 77 SHEET 3 AA4 7 VAL A 49 ASN A 57 -1 N SER A 55 O SER A 64 SHEET 4 AA4 7 VAL A 190 LYS A 202 -1 O PHE A 199 N GLY A 50 SHEET 5 AA4 7 THR A 105 LYS A 118 -1 N LYS A 116 O SER A 192 SHEET 6 AA4 7 LEU A 156 GLN A 157 -1 O LEU A 156 N ILE A 108 SHEET 7 AA4 7 PHE A 149 THR A 150 -1 N PHE A 149 O GLN A 157 SHEET 1 AA5 7 SER B 38 ARG B 41 0 SHEET 2 AA5 7 HIS B 26 ILE B 31 -1 N ILE B 27 O ALA B 40 SHEET 3 AA5 7 VAL B 7 ASP B 12 -1 N ASP B 12 O HIS B 26 SHEET 4 AA5 7 ASP B 210 ALA B 217 -1 O ILE B 212 N LEU B 11 SHEET 5 AA5 7 TRP B 90 THR B 99 -1 N GLY B 94 O PHE B 215 SHEET 6 AA5 7 VAL B 172 PHE B 177 -1 O PHE B 177 N VAL B 93 SHEET 7 AA5 7 LEU B 142 GLY B 146 -1 N ILE B 143 O LEU B 176 SHEET 1 AA6 6 SER B 38 ARG B 41 0 SHEET 2 AA6 6 HIS B 26 ILE B 31 -1 N ILE B 27 O ALA B 40 SHEET 3 AA6 6 VAL B 7 ASP B 12 -1 N ASP B 12 O HIS B 26 SHEET 4 AA6 6 ASP B 210 ALA B 217 -1 O ILE B 212 N LEU B 11 SHEET 5 AA6 6 TRP B 90 THR B 99 -1 N GLY B 94 O PHE B 215 SHEET 6 AA6 6 VAL B 181 HIS B 182 -1 O VAL B 181 N VAL B 91 SHEET 1 AA7 6 THR B 75 ASP B 80 0 SHEET 2 AA7 6 ARG B 62 TYR B 69 -1 N VAL B 67 O THR B 75 SHEET 3 AA7 6 VAL B 49 ASN B 57 -1 N SER B 55 O SER B 64 SHEET 4 AA7 6 VAL B 190 LEU B 200 -1 O ALA B 195 N ILE B 54 SHEET 5 AA7 6 THR B 107 LYS B 118 -1 N LYS B 118 O VAL B 190 SHEET 6 AA7 6 ASN B 126 PHE B 132 -1 O PHE B 132 N TRP B 111 SHEET 1 AA8 7 THR B 75 ASP B 80 0 SHEET 2 AA8 7 ARG B 62 TYR B 69 -1 N VAL B 67 O THR B 75 SHEET 3 AA8 7 VAL B 49 ASN B 57 -1 N SER B 55 O SER B 64 SHEET 4 AA8 7 VAL B 190 LEU B 200 -1 O ALA B 195 N ILE B 54 SHEET 5 AA8 7 THR B 107 LYS B 118 -1 N LYS B 118 O VAL B 190 SHEET 6 AA8 7 LEU B 156 GLN B 157 -1 O LEU B 156 N ILE B 108 SHEET 7 AA8 7 PHE B 149 THR B 150 -1 N PHE B 149 O GLN B 157 LINK OE2 GLU A 10 MN MN A 301 1555 1555 2.26 LINK OD2 ASP A 12 MN MN A 301 1555 1555 1.95 LINK NE2 HIS A 26 MN MN A 301 1555 1555 2.18 LINK MN MN A 301 O HOH A 409 1555 1555 2.06 LINK MN MN A 301 O HOH A 422 1555 1555 1.90 LINK OE2 GLU B 10 MN MN B 301 1555 1555 2.32 LINK NE2 HIS B 26 MN MN B 301 1555 1555 2.18 LINK MN MN B 301 O HOH B 413 1555 1555 1.94 CRYST1 71.958 71.958 161.906 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013897 0.008023 0.000000 0.00000 SCALE2 0.000000 0.016047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006176 0.00000