HEADER TRANSFERASE 29-JAN-21 7LJM TITLE STRUCTURE OF THE SALMONELLA ENTERICA CD-NTASE CDND IN COMPLEX WITH GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CD-NTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA; SOURCE 3 ORGANISM_TAXID: 28901; SOURCE 4 GENE: GNB57_001779; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CD-NTASE, CBASS, TRANSFERASE, TRINUCLEOTIDE EXPDTA X-RAY DIFFRACTION AUTHOR A.GOVANDE,B.LOWEY,J.B.EAGLESHAM,A.W.WHITELEY,P.J.KRANZUSCH REVDAT 5 05-JUN-24 7LJM 1 AUTHOR REVDAT 4 03-APR-24 7LJM 1 REMARK REVDAT 3 06-MAR-24 7LJM 1 REMARK REVDAT 2 14-JUL-21 7LJM 1 JRNL REVDAT 1 02-JUN-21 7LJM 0 JRNL AUTH A.A.GOVANDE,B.DUNCAN-LOWEY,J.B.EAGLESHAM,A.T.WHITELEY, JRNL AUTH 2 P.J.KRANZUSCH JRNL TITL MOLECULAR BASIS OF CD-NTASE NUCLEOTIDE SELECTION IN CBASS JRNL TITL 2 ANTI-PHAGE DEFENSE. JRNL REF CELL REP V. 35 09206 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 34077735 JRNL DOI 10.1016/J.CELREP.2021.109206 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 25773 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.690 REMARK 3 FREE R VALUE TEST SET COUNT : 1982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4900 - 6.2500 0.99 1777 154 0.1936 0.2064 REMARK 3 2 6.2500 - 4.9700 1.00 1765 149 0.2207 0.2500 REMARK 3 3 4.9700 - 4.3400 1.00 1752 150 0.1773 0.2165 REMARK 3 4 4.3400 - 3.9400 1.00 1759 138 0.1913 0.2338 REMARK 3 5 3.9400 - 3.6600 0.98 1696 149 0.2172 0.2643 REMARK 3 6 3.6600 - 3.4500 0.97 1723 142 0.2508 0.2911 REMARK 3 7 3.4400 - 3.2700 0.99 1716 143 0.2537 0.3071 REMARK 3 8 3.2700 - 3.1300 1.00 1739 150 0.2644 0.3390 REMARK 3 9 3.1300 - 3.0100 1.00 1737 134 0.2703 0.3137 REMARK 3 10 3.0100 - 2.9100 1.00 1722 153 0.2682 0.3363 REMARK 3 11 2.9100 - 2.8200 0.99 1750 146 0.2831 0.3036 REMARK 3 12 2.8200 - 2.7300 0.98 1689 143 0.3014 0.3328 REMARK 3 13 2.7300 - 2.6600 0.91 1579 123 0.3131 0.3416 REMARK 3 14 2.6600 - 2.6000 0.79 1387 108 0.3191 0.3694 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.394 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5865 REMARK 3 ANGLE : 0.657 8005 REMARK 3 CHIRALITY : 0.043 847 REMARK 3 PLANARITY : 0.005 1019 REMARK 3 DIHEDRAL : 20.168 2203 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4794 -8.9912 -38.6799 REMARK 3 T TENSOR REMARK 3 T11: 0.2964 T22: 0.2710 REMARK 3 T33: 0.3584 T12: -0.0123 REMARK 3 T13: 0.0158 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 1.9472 L22: 1.0848 REMARK 3 L33: 0.7048 L12: 0.4137 REMARK 3 L13: 0.5067 L23: -0.4118 REMARK 3 S TENSOR REMARK 3 S11: 0.1037 S12: 0.0574 S13: -0.0366 REMARK 3 S21: -0.0757 S22: -0.1227 S23: 0.0008 REMARK 3 S31: -0.0700 S32: -0.0769 S33: 0.0009 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3837 -24.3875 -28.0535 REMARK 3 T TENSOR REMARK 3 T11: 0.4810 T22: 0.3903 REMARK 3 T33: 0.4844 T12: -0.0380 REMARK 3 T13: -0.0585 T23: 0.0589 REMARK 3 L TENSOR REMARK 3 L11: 0.4075 L22: 0.8158 REMARK 3 L33: 0.3677 L12: -0.1084 REMARK 3 L13: 0.1444 L23: 0.1777 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: -0.1507 S13: -0.5083 REMARK 3 S21: 0.3083 S22: -0.0079 S23: 0.2806 REMARK 3 S31: 0.3505 S32: -0.3492 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 182 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2000 -2.7817 -18.2240 REMARK 3 T TENSOR REMARK 3 T11: 0.4816 T22: 0.3231 REMARK 3 T33: 0.2962 T12: -0.1062 REMARK 3 T13: -0.0426 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 1.8962 L22: 0.1915 REMARK 3 L33: 1.9533 L12: 0.0014 REMARK 3 L13: -0.8724 L23: -0.0182 REMARK 3 S TENSOR REMARK 3 S11: 0.1398 S12: -0.3375 S13: -0.0714 REMARK 3 S21: 0.3955 S22: -0.2001 S23: -0.3921 REMARK 3 S31: -0.3252 S32: 0.1947 S33: -0.0231 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 333 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.3395 1.5929 -5.3798 REMARK 3 T TENSOR REMARK 3 T11: 0.9550 T22: 0.9326 REMARK 3 T33: 0.6006 T12: -0.0085 REMARK 3 T13: 0.1331 T23: -0.1935 REMARK 3 L TENSOR REMARK 3 L11: 1.0563 L22: 0.3928 REMARK 3 L33: 0.5925 L12: -0.3661 REMARK 3 L13: 0.4665 L23: -0.4190 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: -0.6073 S13: 0.0094 REMARK 3 S21: 1.1374 S22: -0.1575 S23: 0.3430 REMARK 3 S31: -0.7641 S32: -0.4088 S33: 0.0107 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.2105 -8.6334 -46.4337 REMARK 3 T TENSOR REMARK 3 T11: 0.2869 T22: 0.2919 REMARK 3 T33: 0.4070 T12: 0.0233 REMARK 3 T13: 0.0327 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 2.0036 L22: 0.8035 REMARK 3 L33: 1.2485 L12: 0.2617 REMARK 3 L13: 0.7806 L23: -0.6562 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: -0.1033 S13: 0.0056 REMARK 3 S21: 0.0507 S22: -0.0560 S23: 0.0118 REMARK 3 S31: 0.0094 S32: 0.2784 S33: -0.0004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 127 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.2842 -22.4407 -49.5362 REMARK 3 T TENSOR REMARK 3 T11: 0.4177 T22: 0.3814 REMARK 3 T33: 0.7018 T12: -0.0243 REMARK 3 T13: -0.0004 T23: -0.0378 REMARK 3 L TENSOR REMARK 3 L11: 0.6593 L22: 0.0306 REMARK 3 L33: 2.1448 L12: -0.1209 REMARK 3 L13: 0.2883 L23: -0.0034 REMARK 3 S TENSOR REMARK 3 S11: 0.0602 S12: -0.3903 S13: -0.9728 REMARK 3 S21: -0.0686 S22: -0.3322 S23: 0.3198 REMARK 3 S31: 0.5269 S32: 0.4500 S33: -0.0082 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 155 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.6089 -26.0765 -59.6350 REMARK 3 T TENSOR REMARK 3 T11: 0.6928 T22: 0.6704 REMARK 3 T33: 1.1369 T12: 0.0066 REMARK 3 T13: -0.0463 T23: -0.1976 REMARK 3 L TENSOR REMARK 3 L11: 3.3006 L22: 0.3440 REMARK 3 L33: 1.1985 L12: -0.5650 REMARK 3 L13: -0.1549 L23: -0.4426 REMARK 3 S TENSOR REMARK 3 S11: 0.1439 S12: 0.8310 S13: -0.4611 REMARK 3 S21: -0.2996 S22: 0.2626 S23: -0.0293 REMARK 3 S31: 0.4593 S32: -0.0757 S33: 0.0577 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 188 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.8720 -8.9660 -60.2324 REMARK 3 T TENSOR REMARK 3 T11: 0.4115 T22: 0.5036 REMARK 3 T33: 0.3962 T12: 0.0508 REMARK 3 T13: -0.0278 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 0.9197 L22: 0.9675 REMARK 3 L33: 1.9416 L12: 0.1925 REMARK 3 L13: -0.5533 L23: -0.2817 REMARK 3 S TENSOR REMARK 3 S11: 0.2202 S12: 0.5028 S13: -0.1519 REMARK 3 S21: -0.2111 S22: -0.2092 S23: 0.3254 REMARK 3 S31: -0.2846 S32: -0.2520 S33: 0.2711 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.3348 0.6936 -70.9652 REMARK 3 T TENSOR REMARK 3 T11: 0.5625 T22: 0.6799 REMARK 3 T33: 0.3624 T12: 0.1023 REMARK 3 T13: -0.0458 T23: 0.1122 REMARK 3 L TENSOR REMARK 3 L11: 1.1552 L22: 0.8888 REMARK 3 L33: 1.7449 L12: -0.4853 REMARK 3 L13: -0.8420 L23: 0.3934 REMARK 3 S TENSOR REMARK 3 S11: 0.0921 S12: 0.7037 S13: -0.0210 REMARK 3 S21: -0.2280 S22: -0.0419 S23: 0.3006 REMARK 3 S31: -0.3281 S32: -0.3342 S33: -0.0376 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 331 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.2867 2.9353 -79.5266 REMARK 3 T TENSOR REMARK 3 T11: 0.8102 T22: 1.0152 REMARK 3 T33: 0.6425 T12: -0.0561 REMARK 3 T13: 0.0981 T23: 0.1970 REMARK 3 L TENSOR REMARK 3 L11: 0.9095 L22: 2.4541 REMARK 3 L33: 3.2153 L12: -0.5272 REMARK 3 L13: 0.7556 L23: 1.9285 REMARK 3 S TENSOR REMARK 3 S11: 0.9016 S12: 0.7580 S13: 0.6997 REMARK 3 S21: -1.0564 S22: -0.0180 S23: -0.6918 REMARK 3 S31: -0.8816 S32: 0.4133 S33: 1.5603 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254473. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26345 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 38.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: ECCDND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 25% PEG-3000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.89050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 171 REMARK 465 PHE A 172 REMARK 465 ILE A 173 REMARK 465 SER A 174 REMARK 465 GLY A 355 REMARK 465 PRO A 356 REMARK 465 GLN A 357 REMARK 465 GLY A 358 REMARK 465 GLY A 359 REMARK 465 ASP A 360 REMARK 465 ARG A 361 REMARK 465 SER A 362 REMARK 465 SER A 363 REMARK 465 GLY A 364 REMARK 465 PHE A 365 REMARK 465 THR A 366 REMARK 465 ALA A 367 REMARK 465 PRO A 368 REMARK 465 THR A 369 REMARK 465 GLN A 370 REMARK 465 PRO A 371 REMARK 465 ALA A 372 REMARK 465 GLU A 373 REMARK 465 PRO A 374 REMARK 465 GLN A 375 REMARK 465 LYS A 376 REMARK 465 THR A 377 REMARK 465 GLY A 378 REMARK 465 ARG A 379 REMARK 465 PHE A 380 REMARK 465 ALA A 381 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 SER B 169 REMARK 465 GLY B 170 REMARK 465 LEU B 171 REMARK 465 PHE B 172 REMARK 465 ILE B 173 REMARK 465 SER B 174 REMARK 465 ASN B 175 REMARK 465 SER B 176 REMARK 465 ALA B 177 REMARK 465 ASN B 178 REMARK 465 GLY B 355 REMARK 465 PRO B 356 REMARK 465 GLN B 357 REMARK 465 GLY B 358 REMARK 465 GLY B 359 REMARK 465 ASP B 360 REMARK 465 ARG B 361 REMARK 465 SER B 362 REMARK 465 SER B 363 REMARK 465 GLY B 364 REMARK 465 PHE B 365 REMARK 465 THR B 366 REMARK 465 ALA B 367 REMARK 465 PRO B 368 REMARK 465 THR B 369 REMARK 465 GLN B 370 REMARK 465 PRO B 371 REMARK 465 ALA B 372 REMARK 465 GLU B 373 REMARK 465 PRO B 374 REMARK 465 GLN B 375 REMARK 465 LYS B 376 REMARK 465 THR B 377 REMARK 465 GLY B 378 REMARK 465 ARG B 379 REMARK 465 PHE B 380 REMARK 465 ALA B 381 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 296 N2 GTP B 404 1.30 REMARK 500 NH1 ARG B 109 O2A GTP B 405 1.30 REMARK 500 O HOH A 551 O HOH A 556 1.83 REMARK 500 OD1 ASP A 157 O HOH A 501 1.84 REMARK 500 O HOH B 518 O HOH B 531 1.95 REMARK 500 OD1 ASN B 81 O HOH B 501 2.01 REMARK 500 O VAL B 304 O HOH B 502 2.06 REMARK 500 O HOH A 506 O HOH A 536 2.10 REMARK 500 O GLY A 319 O HOH A 502 2.13 REMARK 500 NE2 GLN A 334 O HOH A 503 2.14 REMARK 500 OD1 ASP A 312 O HOH A 504 2.17 REMARK 500 N1 GTP A 404 O HOH A 505 2.18 REMARK 500 O1B GTP B 404 O HOH B 503 2.18 REMARK 500 O GLU B 22 O HOH B 504 2.19 REMARK 500 O ALA A 129 O HOH A 506 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 51 -165.58 -129.25 REMARK 500 GLU A 102 24.40 44.09 REMARK 500 GLN A 107 40.97 -103.66 REMARK 500 ALA A 129 176.84 -58.39 REMARK 500 TRP A 187 -22.86 -140.14 REMARK 500 ASN A 200 50.78 -91.90 REMARK 500 ASN B 64 -134.12 58.08 REMARK 500 ALA B 189 30.27 -86.01 REMARK 500 ASN B 200 47.12 -90.53 REMARK 500 ASN B 239 34.40 -97.37 REMARK 500 LEU B 305 36.88 -99.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 69 OD2 REMARK 620 2 ASP A 71 OD1 101.5 REMARK 620 3 ASP A 71 OD2 62.5 47.4 REMARK 620 4 ASP A 121 OD2 129.2 69.9 115.1 REMARK 620 5 GTP A 404 O1A 76.6 95.0 61.6 151.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 69 OD2 REMARK 620 2 ASP A 71 OD2 79.2 REMARK 620 3 GTP A 404 O3G 87.1 166.0 REMARK 620 4 GTP A 404 O3B 105.6 131.6 54.9 REMARK 620 5 GTP A 404 O1A 76.4 71.3 108.3 63.7 REMARK 620 6 GTP A 404 O2B 150.4 95.6 97.7 56.6 74.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 196 OD1 REMARK 620 2 ASP A 196 OD2 48.2 REMARK 620 3 GTP A 405 O2B 93.4 102.3 REMARK 620 4 GTP A 405 O3B 60.5 103.4 55.2 REMARK 620 5 GTP A 405 O2G 79.5 123.8 99.5 52.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 69 OD1 REMARK 620 2 ASP B 69 OD2 48.8 REMARK 620 3 ASP B 71 OD1 102.4 145.8 REMARK 620 4 ASP B 71 OD2 93.9 105.0 52.2 REMARK 620 5 ASP B 121 OD2 94.9 121.6 72.1 124.2 REMARK 620 6 GTP B 404 O1A 122.8 80.4 110.4 73.2 138.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 71 OD2 REMARK 620 2 GTP B 404 O2B 103.4 REMARK 620 3 GTP B 404 O1G 134.7 84.9 REMARK 620 4 GTP B 404 O1A 62.9 87.6 73.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 196 OD1 REMARK 620 2 ASP B 196 OD2 45.7 REMARK 620 3 GTP B 405 O1G 72.2 114.5 REMARK 620 4 GTP B 405 O3B 99.8 138.1 56.8 REMARK 620 N 1 2 3 DBREF1 7LJM A 1 381 UNP A0A728KSL7_SALET DBREF2 7LJM A A0A728KSL7 1 381 DBREF1 7LJM B 1 381 UNP A0A728KSL7_SALET DBREF2 7LJM B A0A728KSL7 1 381 SEQADV 7LJM SER A 0 UNP A0A728KSL EXPRESSION TAG SEQADV 7LJM SER A 363 UNP A0A728KSL GLY 363 CONFLICT SEQADV 7LJM SER B 0 UNP A0A728KSL EXPRESSION TAG SEQADV 7LJM SER B 363 UNP A0A728KSL GLY 363 CONFLICT SEQRES 1 A 382 SER MET GLU LEU ASN SER GLN PHE ASN ALA PHE LEU THR SEQRES 2 A 382 ASN ILE ARG PRO THR ASP PRO GLN LYS GLU ASP TRP LYS SEQRES 3 A 382 GLY GLY ALA LYS THR LEU ARG GLU ARG LEU ASN ASN TYR SEQRES 4 A 382 GLU PRO LEU LYS ASP ILE VAL VAL SER THR PHE LEU GLN SEQRES 5 A 382 GLY SER ILE ARG ARG SER THR ALA ILE ARG PRO LEU ASN SEQRES 6 A 382 GLY LYS ARG PRO ASP VAL ASP ILE VAL VAL VAL THR ASN SEQRES 7 A 382 LEU ASP HIS ASN GLN ILE ALA PRO GLN GLU ALA MET ASP SEQRES 8 A 382 LEU PHE VAL PRO PHE LEU GLU LYS TYR TYR PRO GLU LYS SEQRES 9 A 382 TRP VAL PRO GLN GLY ARG SER PHE GLY ILE THR LEU SER SEQRES 10 A 382 TYR VAL GLU LEU ASP LEU VAL ILE THR ALA ILE PRO ALA SEQRES 11 A 382 SER GLY GLU GLU LYS ASN LEU LEU GLU GLN LEU TYR ARG SEQRES 12 A 382 SER GLU SER VAL LEU THR VAL ASN SER LEU GLU GLU GLN SEQRES 13 A 382 LYS ASP TRP ARG LEU ASN LYS SER TRP LYS PRO SER GLU SEQRES 14 A 382 SER GLY LEU PHE ILE SER ASN SER ALA ASN ILE GLN ASP SEQRES 15 A 382 ALA PRO LEU SER GLU TRP LYS ALA HIS PRO LEU VAL LEU SEQRES 16 A 382 PRO ASP ARG ASP GLU ASN LYS TRP GLY ARG THR HIS PRO SEQRES 17 A 382 LEU ALA GLN ILE ARG TRP THR ALA GLU LYS ASN ARG ALA SEQRES 18 A 382 CYS ASN GLY HIS TYR ILE ASN LEU VAL ARG ALA VAL LYS SEQRES 19 A 382 TRP TRP ARG GLN GLN ASN SER ASP ASN LEU PRO LYS TYR SEQRES 20 A 382 PRO LYS GLY TYR PRO LEU GLU HIS LEU ILE GLY ASN ALA SEQRES 21 A 382 LEU ASP ASP GLY THR PRO SER MET GLY LYS GLY LEU VAL SEQRES 22 A 382 GLN LEU ILE ASP THR PHE LEU SER ARG TRP ALA TYR VAL SEQRES 23 A 382 TYR SER LEU ARG SER LYS PRO SER LEU PRO ASP HIS GLY SEQRES 24 A 382 VAL GLU GLU HIS ASP VAL LEU ALA ARG LEU SER ALA GLU SEQRES 25 A 382 ASP PHE CYS LEU PHE TYR GLU GLY LEU GLU ASP ALA ALA SEQRES 26 A 382 ILE ILE ALA ARG SER ALA LEU ALA SER GLN ASP PRO LYS SEQRES 27 A 382 GLU SER ALA GLU LEU TRP ARG LYS LEU PHE GLY THR LYS SEQRES 28 A 382 PHE PRO PHE PRO GLY PRO GLN GLY GLY ASP ARG SER SER SEQRES 29 A 382 GLY PHE THR ALA PRO THR GLN PRO ALA GLU PRO GLN LYS SEQRES 30 A 382 THR GLY ARG PHE ALA SEQRES 1 B 382 SER MET GLU LEU ASN SER GLN PHE ASN ALA PHE LEU THR SEQRES 2 B 382 ASN ILE ARG PRO THR ASP PRO GLN LYS GLU ASP TRP LYS SEQRES 3 B 382 GLY GLY ALA LYS THR LEU ARG GLU ARG LEU ASN ASN TYR SEQRES 4 B 382 GLU PRO LEU LYS ASP ILE VAL VAL SER THR PHE LEU GLN SEQRES 5 B 382 GLY SER ILE ARG ARG SER THR ALA ILE ARG PRO LEU ASN SEQRES 6 B 382 GLY LYS ARG PRO ASP VAL ASP ILE VAL VAL VAL THR ASN SEQRES 7 B 382 LEU ASP HIS ASN GLN ILE ALA PRO GLN GLU ALA MET ASP SEQRES 8 B 382 LEU PHE VAL PRO PHE LEU GLU LYS TYR TYR PRO GLU LYS SEQRES 9 B 382 TRP VAL PRO GLN GLY ARG SER PHE GLY ILE THR LEU SER SEQRES 10 B 382 TYR VAL GLU LEU ASP LEU VAL ILE THR ALA ILE PRO ALA SEQRES 11 B 382 SER GLY GLU GLU LYS ASN LEU LEU GLU GLN LEU TYR ARG SEQRES 12 B 382 SER GLU SER VAL LEU THR VAL ASN SER LEU GLU GLU GLN SEQRES 13 B 382 LYS ASP TRP ARG LEU ASN LYS SER TRP LYS PRO SER GLU SEQRES 14 B 382 SER GLY LEU PHE ILE SER ASN SER ALA ASN ILE GLN ASP SEQRES 15 B 382 ALA PRO LEU SER GLU TRP LYS ALA HIS PRO LEU VAL LEU SEQRES 16 B 382 PRO ASP ARG ASP GLU ASN LYS TRP GLY ARG THR HIS PRO SEQRES 17 B 382 LEU ALA GLN ILE ARG TRP THR ALA GLU LYS ASN ARG ALA SEQRES 18 B 382 CYS ASN GLY HIS TYR ILE ASN LEU VAL ARG ALA VAL LYS SEQRES 19 B 382 TRP TRP ARG GLN GLN ASN SER ASP ASN LEU PRO LYS TYR SEQRES 20 B 382 PRO LYS GLY TYR PRO LEU GLU HIS LEU ILE GLY ASN ALA SEQRES 21 B 382 LEU ASP ASP GLY THR PRO SER MET GLY LYS GLY LEU VAL SEQRES 22 B 382 GLN LEU ILE ASP THR PHE LEU SER ARG TRP ALA TYR VAL SEQRES 23 B 382 TYR SER LEU ARG SER LYS PRO SER LEU PRO ASP HIS GLY SEQRES 24 B 382 VAL GLU GLU HIS ASP VAL LEU ALA ARG LEU SER ALA GLU SEQRES 25 B 382 ASP PHE CYS LEU PHE TYR GLU GLY LEU GLU ASP ALA ALA SEQRES 26 B 382 ILE ILE ALA ARG SER ALA LEU ALA SER GLN ASP PRO LYS SEQRES 27 B 382 GLU SER ALA GLU LEU TRP ARG LYS LEU PHE GLY THR LYS SEQRES 28 B 382 PHE PRO PHE PRO GLY PRO GLN GLY GLY ASP ARG SER SER SEQRES 29 B 382 GLY PHE THR ALA PRO THR GLN PRO ALA GLU PRO GLN LYS SEQRES 30 B 382 THR GLY ARG PHE ALA HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HET GTP A 404 32 HET GTP A 405 32 HET MG B 401 1 HET MG B 402 1 HET MG B 403 1 HET GTP B 404 32 HET GTP B 405 32 HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 3 MG 6(MG 2+) FORMUL 6 GTP 4(C10 H16 N5 O14 P3) FORMUL 13 HOH *91(H2 O) HELIX 1 AA1 ASN A 4 ARG A 15 1 12 HELIX 2 AA2 THR A 17 TYR A 38 1 22 HELIX 3 AA3 GLU A 39 LYS A 42 5 4 HELIX 4 AA4 GLN A 51 ARG A 56 1 6 HELIX 5 AA5 PRO A 62 LYS A 66 5 5 HELIX 6 AA6 ALA A 84 ASP A 90 1 7 HELIX 7 AA7 PHE A 92 TYR A 100 1 9 HELIX 8 AA8 SER A 130 ARG A 142 1 13 HELIX 9 AA9 SER A 143 THR A 148 1 6 HELIX 10 AB1 PRO A 183 TRP A 187 5 5 HELIX 11 AB2 HIS A 206 CYS A 221 1 16 HELIX 12 AB3 GLY A 223 ASN A 239 1 17 HELIX 13 AB4 GLY A 249 LEU A 260 1 12 HELIX 14 AB5 SER A 266 TRP A 282 1 17 HELIX 15 AB6 TRP A 282 LEU A 288 1 7 HELIX 16 AB7 SER A 309 SER A 333 1 25 HELIX 17 AB8 ASP A 335 GLY A 348 1 14 HELIX 18 AB9 SER B 5 ASN B 13 1 9 HELIX 19 AC1 THR B 17 TYR B 38 1 22 HELIX 20 AC2 TYR B 38 ASP B 43 1 6 HELIX 21 AC3 ALA B 84 LEU B 91 1 8 HELIX 22 AC4 PHE B 92 TYR B 100 1 9 HELIX 23 AC5 SER B 130 ARG B 142 1 13 HELIX 24 AC6 SER B 143 THR B 148 1 6 HELIX 25 AC7 PRO B 183 LYS B 188 1 6 HELIX 26 AC8 HIS B 206 CYS B 221 1 16 HELIX 27 AC9 GLY B 223 ASN B 239 1 17 HELIX 28 AD1 SER B 240 LEU B 243 5 4 HELIX 29 AD2 LYS B 248 LEU B 260 1 13 HELIX 30 AD3 SER B 266 TRP B 282 1 17 HELIX 31 AD4 TRP B 282 LEU B 288 1 7 HELIX 32 AD5 SER B 309 SER B 333 1 25 HELIX 33 AD6 ASP B 335 GLY B 348 1 14 SHEET 1 AA1 5 VAL A 45 LEU A 50 0 SHEET 2 AA1 5 ASP A 69 THR A 76 -1 O VAL A 75 N SER A 47 SHEET 3 AA1 5 GLU A 119 ALA A 126 1 O ASP A 121 N ILE A 72 SHEET 4 AA1 5 SER A 110 THR A 114 -1 N PHE A 111 O LEU A 122 SHEET 5 AA1 5 TRP A 104 GLN A 107 -1 N GLN A 107 O SER A 110 SHEET 1 AA2 2 LEU A 192 PRO A 195 0 SHEET 2 AA2 2 TRP A 202 THR A 205 -1 O GLY A 203 N LEU A 194 SHEET 1 AA3 5 VAL B 45 GLN B 51 0 SHEET 2 AA3 5 ASP B 69 THR B 76 -1 O VAL B 75 N VAL B 46 SHEET 3 AA3 5 GLU B 119 ALA B 126 1 O THR B 125 N VAL B 74 SHEET 4 AA3 5 SER B 110 THR B 114 -1 N PHE B 111 O LEU B 122 SHEET 5 AA3 5 TRP B 104 GLN B 107 -1 N GLN B 107 O SER B 110 SHEET 1 AA4 2 LEU B 192 PRO B 195 0 SHEET 2 AA4 2 TRP B 202 THR B 205 -1 O GLY B 203 N LEU B 194 LINK OD2 ASP A 69 MG MG A 401 1555 1555 2.39 LINK OD2 ASP A 69 MG MG A 402 1555 1555 2.21 LINK OD1 ASP A 71 MG MG A 401 1555 1555 2.34 LINK OD2 ASP A 71 MG MG A 401 1555 1555 2.94 LINK OD2 ASP A 71 MG MG A 402 1555 1555 2.19 LINK OD2 ASP A 121 MG MG A 401 1555 1555 2.73 LINK OD1 ASP A 196 MG MG A 403 1555 1555 2.66 LINK OD2 ASP A 196 MG MG A 403 1555 1555 2.71 LINK MG MG A 401 O1A GTP A 404 1555 1555 2.35 LINK MG MG A 402 O3G GTP A 404 1555 1555 2.75 LINK MG MG A 402 O3B GTP A 404 1555 1555 2.79 LINK MG MG A 402 O1A GTP A 404 1555 1555 2.52 LINK MG MG A 402 O2B GTP A 404 1555 1555 2.70 LINK MG MG A 403 O2B GTP A 405 1555 1555 2.66 LINK MG MG A 403 O3B GTP A 405 1555 1555 2.81 LINK MG MG A 403 O2G GTP A 405 1555 1555 2.93 LINK OD1 ASP B 69 MG MG B 402 1555 1555 2.88 LINK OD2 ASP B 69 MG MG B 402 1555 1555 2.20 LINK OD2 ASP B 71 MG MG B 401 1555 1555 2.14 LINK OD1 ASP B 71 MG MG B 402 1555 1555 2.55 LINK OD2 ASP B 71 MG MG B 402 1555 1555 2.44 LINK OD2 ASP B 121 MG MG B 402 1555 1555 2.42 LINK OD1 ASP B 196 MG MG B 403 1555 1555 2.65 LINK OD2 ASP B 196 MG MG B 403 1555 1555 2.96 LINK MG MG B 401 O2B GTP B 404 1555 1555 2.18 LINK MG MG B 401 O1G GTP B 404 1555 1555 2.34 LINK MG MG B 401 O1A GTP B 404 1555 1555 2.91 LINK MG MG B 402 O1A GTP B 404 1555 1555 2.09 LINK MG MG B 403 O1G GTP B 405 1555 1555 2.15 LINK MG MG B 403 O3B GTP B 405 1555 1555 2.94 CISPEP 1 TYR A 246 PRO A 247 0 3.03 CISPEP 2 TYR B 246 PRO B 247 0 9.78 CRYST1 74.473 69.781 88.697 90.00 110.35 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013428 0.000000 0.004981 0.00000 SCALE2 0.000000 0.014331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012025 0.00000