HEADER TRANSPORT PROTEIN 02-FEB-21 7LKM TITLE THE PILB(N-TERMINAL_P70S MUTANT)-PILZ COMPLEX OF THE TYPE IV PILUS TITLE 2 FROM XANTHOMONAS CITRI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PILUS BIOGENESIS PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 12-163; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: EXPRESSED WITH AN N-TERMINAL HIS TAG; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TYPE IV FIMBRIAE ASSEMBLY PROTEIN; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI; SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: 306; SOURCE 5 GENE: PILB, XAC3239; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI; SOURCE 10 ORGANISM_TAXID: 190486; SOURCE 11 STRAIN: 306; SOURCE 12 GENE: PILZ, XAC1133; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TYPE IV PILUS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.E.LLONTOP,C.R.GUZZO,C.S.FARAH REVDAT 3 03-APR-24 7LKM 1 REMARK REVDAT 2 01-SEP-21 7LKM 1 JRNL REVDAT 1 11-AUG-21 7LKM 0 JRNL AUTH E.E.LLONTOP,W.CENENS,D.C.FAVARO,G.G.SGRO,R.K.SALINAS, JRNL AUTH 2 C.R.GUZZO,C.S.FARAH JRNL TITL THE PILB-PILZ-FIMX REGULATORY COMPLEX OF THE TYPE IV PILUS JRNL TITL 2 FROM XANTHOMONAS CITRI. JRNL REF PLOS PATHOG. V. 17 09808 2021 JRNL REFN ESSN 1553-7374 JRNL PMID 34398935 JRNL DOI 10.1371/JOURNAL.PPAT.1009808 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 39155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1935 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0300 - 4.8100 1.00 2685 153 0.1675 0.1881 REMARK 3 2 4.8100 - 3.8200 1.00 2668 142 0.1397 0.1743 REMARK 3 3 3.8200 - 3.3400 1.00 2652 164 0.1516 0.2184 REMARK 3 4 3.3400 - 3.0400 1.00 2652 153 0.1762 0.2193 REMARK 3 5 3.0400 - 2.8200 1.00 2643 149 0.1795 0.2423 REMARK 3 6 2.8200 - 2.6500 1.00 2672 135 0.1931 0.2349 REMARK 3 7 2.6500 - 2.5200 0.99 2654 124 0.1901 0.2501 REMARK 3 8 2.5200 - 2.4100 1.00 2645 147 0.1906 0.2471 REMARK 3 9 2.4100 - 2.3200 1.00 2653 106 0.1904 0.2636 REMARK 3 10 2.3200 - 2.2400 1.00 2672 134 0.2007 0.2496 REMARK 3 11 2.2400 - 2.1700 0.99 2649 113 0.2112 0.2665 REMARK 3 12 2.1700 - 2.1100 1.00 2675 137 0.2236 0.3004 REMARK 3 13 2.1100 - 2.0500 1.00 2608 137 0.2372 0.3029 REMARK 3 14 2.0500 - 2.0000 1.00 2692 141 0.2600 0.3273 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.259 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.829 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4052 REMARK 3 ANGLE : 1.500 5524 REMARK 3 CHIRALITY : 0.071 642 REMARK 3 PLANARITY : 0.011 718 REMARK 3 DIHEDRAL : 21.659 560 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 10 or resid 12 REMARK 3 through 46 or resid 48 through 95 or REMARK 3 resid 97 through 105 or resid 107 through REMARK 3 117 or (resid 118 through 119 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 120 through 123 or resid 126 REMARK 3 through 127 or resid 129 through 157)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and ((resid 10 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 12 through 40 or (resid 41 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 42 through 46 or REMARK 3 resid 48 through 95 or resid 97 through REMARK 3 105 or resid 107 through 123 or resid 126 REMARK 3 through 127 or resid 129 through 157)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and (resid 10 through 15 or REMARK 3 (resid 16 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 17 or REMARK 3 resid 19 through 88 or (resid 89 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 90 through 91 or REMARK 3 (resid 92 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 93 REMARK 3 through 117)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 10 through 17 or REMARK 3 resid 19 through 39 or (resid 40 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 41 through 77 or REMARK 3 (resid 78 through 81 and (name N or name REMARK 3 CA or name C or name O or name CB )) or REMARK 3 resid 82 through 117)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254480. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.45866 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44979 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PILB-PILZ_SEMET_MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5; 2.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 61.20400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 158 REMARK 465 LEU A 159 REMARK 465 GLY A 160 REMARK 465 ASP A 161 REMARK 465 ASP A 162 REMARK 465 GLU A 163 REMARK 465 MET B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 SER B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 LEU B 4 REMARK 465 VAL B 5 REMARK 465 PRO B 6 REMARK 465 ARG B 7 REMARK 465 GLY B 8 REMARK 465 SER B 9 REMARK 465 ALA B 158 REMARK 465 LEU B 159 REMARK 465 GLY B 160 REMARK 465 ASP B 161 REMARK 465 ASP B 162 REMARK 465 GLU B 163 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ALA C 3 REMARK 465 MET C 4 REMARK 465 ASN C 5 REMARK 465 ALA C 6 REMARK 465 ARG C 7 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 ALA D 3 REMARK 465 MET D 4 REMARK 465 ASN D 5 REMARK 465 ALA D 6 REMARK 465 ARG D 7 REMARK 465 GLN D 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 10 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 ARG B 118 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 40 CG CD CE NZ REMARK 470 ASN C 78 CG OD1 ND2 REMARK 470 ARG C 79 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 94 CG CD OE1 OE2 REMARK 470 LYS D 16 CG CD CE NZ REMARK 470 ASP D 89 CG OD1 OD2 REMARK 470 GLU D 92 CG CD OE1 OE2 REMARK 470 GLU D 94 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 338 O HOH D 366 2.10 REMARK 500 O HOH C 303 O HOH C 376 2.12 REMARK 500 O GLU A 66 O HOH A 201 2.14 REMARK 500 O HOH A 294 O HOH A 316 2.15 REMARK 500 O HOH B 267 O HOH B 310 2.17 REMARK 500 O GLY C 45 O HOH C 301 2.17 REMARK 500 NH2 ARG A 142 O HOH A 202 2.18 REMARK 500 O HOH B 251 O HOH B 304 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 327 O HOH B 317 2447 1.93 REMARK 500 O HOH B 279 O HOH C 307 1656 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 26 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG A 143 NE - CZ - NH1 ANGL. DEV. = -7.0 DEGREES REMARK 500 LYS B 124 CD - CE - NZ ANGL. DEV. = 14.6 DEGREES REMARK 500 ASP B 137 OD1 - CG - OD2 ANGL. DEV. = -13.5 DEGREES REMARK 500 ASP B 137 CB - CG - OD1 ANGL. DEV. = 15.7 DEGREES REMARK 500 ASP B 137 CB - CG - OD2 ANGL. DEV. = -19.0 DEGREES REMARK 500 GLU C 101 CG - CD - OE2 ANGL. DEV. = -12.7 DEGREES REMARK 500 LYS D 66 CD - CE - NZ ANGL. DEV. = 14.2 DEGREES REMARK 500 GLN D 76 CA - CB - CG ANGL. DEV. = -15.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 10 63.57 -161.13 REMARK 500 HIS A 10 64.17 -161.13 REMARK 500 GLU A 27 -71.05 14.02 REMARK 500 LEU A 100 -63.92 -96.42 REMARK 500 LEU B 100 -66.93 -98.17 REMARK 500 THR C 116 -96.12 -124.85 REMARK 500 THR D 116 -91.51 -123.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 26 0.08 SIDE CHAIN REMARK 500 ARG A 143 0.14 SIDE CHAIN REMARK 500 ASP B 137 0.13 SIDE CHAIN REMARK 500 GLU C 101 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 401 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH D 384 DISTANCE = 6.86 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 202 DBREF 7LKM A 12 163 UNP Q8PHL2 Q8PHL2_XANAC 12 163 DBREF 7LKM B 12 163 UNP Q8PHL2 Q8PHL2_XANAC 12 163 DBREF 7LKM C 1 117 UNP Q8PND9 Q8PND9_XANAC 1 117 DBREF 7LKM D 1 117 UNP Q8PND9 Q8PND9_XANAC 1 117 SEQADV 7LKM MET A -9 UNP Q8PHL2 INITIATING METHIONINE SEQADV 7LKM GLY A -8 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM SER A -7 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM SER A -6 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS A -5 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS A -4 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS A -3 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS A -2 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS A -1 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS A 0 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM SER A 1 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM SER A 2 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM GLY A 3 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM LEU A 4 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM VAL A 5 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM PRO A 6 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM ARG A 7 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM GLY A 8 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM SER A 9 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS A 10 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM MET A 11 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM SER A 70 UNP Q8PHL2 PRO 70 ENGINEERED MUTATION SEQADV 7LKM MET B -9 UNP Q8PHL2 INITIATING METHIONINE SEQADV 7LKM GLY B -8 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM SER B -7 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM SER B -6 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS B -5 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS B -4 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS B -3 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS B -2 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS B -1 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS B 0 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM SER B 1 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM SER B 2 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM GLY B 3 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM LEU B 4 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM VAL B 5 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM PRO B 6 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM ARG B 7 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM GLY B 8 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM SER B 9 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM HIS B 10 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM MET B 11 UNP Q8PHL2 EXPRESSION TAG SEQADV 7LKM SER B 70 UNP Q8PHL2 PRO 70 ENGINEERED MUTATION SEQRES 1 A 173 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 173 LEU VAL PRO ARG GLY SER HIS MET ILE THR GLY ILE ALA SEQRES 3 A 173 ARG ARG LEU VAL GLN ASP GLY ALA VAL GLU GLU ALA VAL SEQRES 4 A 173 ALA ARG SER ALA MET ASP GLN ALA SER ALA ALA LYS VAL SEQRES 5 A 173 PRO LEU PRO GLN TRP PHE ALA GLU LYS LYS LEU VAL THR SEQRES 6 A 173 ALA SER GLN LEU ALA ALA ALA ASN ALA VAL GLU PHE GLY SEQRES 7 A 173 MET SER LEU LEU ASP VAL SER ALA PHE ASP ALA SER GLN SEQRES 8 A 173 ASN ALA VAL LYS LEU VAL SER GLU GLU LEU LEU GLN LYS SEQRES 9 A 173 HIS GLN VAL LEU PRO LEU PHE LYS ARG GLY ASN ARG LEU SEQRES 10 A 173 PHE VAL GLY VAL SER ASN PRO THR GLN THR ARG ALA LEU SEQRES 11 A 173 ASP ASP ILE LYS PHE HIS THR ASN LEU VAL VAL GLU PRO SEQRES 12 A 173 ILE LEU VAL ASP GLU ASP GLN ILE ARG ARG THR LEU GLU SEQRES 13 A 173 GLN TRP GLN ALA SER ASN ALA ALA LEU GLY SER ALA LEU SEQRES 14 A 173 GLY ASP ASP GLU SEQRES 1 B 173 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 173 LEU VAL PRO ARG GLY SER HIS MET ILE THR GLY ILE ALA SEQRES 3 B 173 ARG ARG LEU VAL GLN ASP GLY ALA VAL GLU GLU ALA VAL SEQRES 4 B 173 ALA ARG SER ALA MET ASP GLN ALA SER ALA ALA LYS VAL SEQRES 5 B 173 PRO LEU PRO GLN TRP PHE ALA GLU LYS LYS LEU VAL THR SEQRES 6 B 173 ALA SER GLN LEU ALA ALA ALA ASN ALA VAL GLU PHE GLY SEQRES 7 B 173 MET SER LEU LEU ASP VAL SER ALA PHE ASP ALA SER GLN SEQRES 8 B 173 ASN ALA VAL LYS LEU VAL SER GLU GLU LEU LEU GLN LYS SEQRES 9 B 173 HIS GLN VAL LEU PRO LEU PHE LYS ARG GLY ASN ARG LEU SEQRES 10 B 173 PHE VAL GLY VAL SER ASN PRO THR GLN THR ARG ALA LEU SEQRES 11 B 173 ASP ASP ILE LYS PHE HIS THR ASN LEU VAL VAL GLU PRO SEQRES 12 B 173 ILE LEU VAL ASP GLU ASP GLN ILE ARG ARG THR LEU GLU SEQRES 13 B 173 GLN TRP GLN ALA SER ASN ALA ALA LEU GLY SER ALA LEU SEQRES 14 B 173 GLY ASP ASP GLU SEQRES 1 C 117 MET SER ALA MET ASN ALA ARG GLN GLY ILE LEU SER LEU SEQRES 2 C 117 ALA LEU LYS ASP LYS PRO ALA LEU TYR SER ALA TYR MET SEQRES 3 C 117 PRO PHE VAL LYS GLY GLY GLY ILE PHE VAL PRO THR PRO SEQRES 4 C 117 LYS ARG TYR MET LEU GLY ASP GLU VAL PHE LEU LEU LEU SEQRES 5 C 117 THR LEU PRO ASP SER SER GLU ARG LEU PRO VAL ALA GLY SEQRES 6 C 117 LYS VAL ILE TRP THR THR PRO ALA GLY ALA GLN GLY ASN SEQRES 7 C 117 ARG ALA ALA GLY ILE GLY VAL GLN PHE PRO ASP GLY PRO SEQRES 8 C 117 GLU GLY GLU ALA VAL ARG ASN LYS ILE GLU THR LEU LEU SEQRES 9 C 117 ALA GLY LEU THR THR SER ASP LYS PRO THR HIS THR MET SEQRES 1 D 117 MET SER ALA MET ASN ALA ARG GLN GLY ILE LEU SER LEU SEQRES 2 D 117 ALA LEU LYS ASP LYS PRO ALA LEU TYR SER ALA TYR MET SEQRES 3 D 117 PRO PHE VAL LYS GLY GLY GLY ILE PHE VAL PRO THR PRO SEQRES 4 D 117 LYS ARG TYR MET LEU GLY ASP GLU VAL PHE LEU LEU LEU SEQRES 5 D 117 THR LEU PRO ASP SER SER GLU ARG LEU PRO VAL ALA GLY SEQRES 6 D 117 LYS VAL ILE TRP THR THR PRO ALA GLY ALA GLN GLY ASN SEQRES 7 D 117 ARG ALA ALA GLY ILE GLY VAL GLN PHE PRO ASP GLY PRO SEQRES 8 D 117 GLU GLY GLU ALA VAL ARG ASN LYS ILE GLU THR LEU LEU SEQRES 9 D 117 ALA GLY LEU THR THR SER ASP LYS PRO THR HIS THR MET HET SO4 C 201 5 HET SO4 C 202 5 HET SO4 C 203 5 HET SO4 D 201 5 HET SO4 D 202 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 HOH *443(H2 O) HELIX 1 AA1 THR A 13 ASP A 22 1 10 HELIX 2 AA2 GLU A 26 LYS A 41 1 16 HELIX 3 AA3 PRO A 43 LYS A 52 1 10 HELIX 4 AA4 THR A 55 GLY A 68 1 14 HELIX 5 AA5 VAL A 74 PHE A 77 5 4 HELIX 6 AA6 ASP A 78 ASN A 82 5 5 HELIX 7 AA7 ALA A 83 VAL A 87 5 5 HELIX 8 AA8 SER A 88 GLN A 96 1 9 HELIX 9 AA9 THR A 117 ASN A 128 1 12 HELIX 10 AB1 ASP A 137 ALA A 154 1 18 HELIX 11 AB2 THR B 13 ASP B 22 1 10 HELIX 12 AB3 GLU B 26 LYS B 41 1 16 HELIX 13 AB4 PRO B 43 LYS B 52 1 10 HELIX 14 AB5 THR B 55 GLY B 68 1 14 HELIX 15 AB6 VAL B 74 PHE B 77 5 4 HELIX 16 AB7 ASP B 78 ASN B 82 5 5 HELIX 17 AB8 ALA B 83 VAL B 87 5 5 HELIX 18 AB9 SER B 88 HIS B 95 1 8 HELIX 19 AC1 THR B 117 ASN B 128 1 12 HELIX 20 AC2 ASP B 137 ALA B 154 1 18 HELIX 21 AC3 ASP C 17 ALA C 24 1 8 HELIX 22 AC4 GLY C 90 LEU C 104 1 15 HELIX 23 AC5 ASP D 17 ALA D 24 1 8 HELIX 24 AC6 GLY D 90 LEU D 104 1 15 SHEET 1 AA1 4 LEU A 71 LEU A 72 0 SHEET 2 AA1 4 ARG C 60 THR C 71 -1 O THR C 70 N LEU A 71 SHEET 3 AA1 4 GLU C 47 THR C 53 -1 N LEU C 52 O LEU C 61 SHEET 4 AA1 4 LEU C 11 ALA C 14 1 N LEU C 13 O THR C 53 SHEET 1 AA2 5 LEU A 71 LEU A 72 0 SHEET 2 AA2 5 ARG C 60 THR C 71 -1 O THR C 70 N LEU A 71 SHEET 3 AA2 5 GLY C 82 GLN C 86 -1 O GLN C 86 N LYS C 66 SHEET 4 AA2 5 GLY C 33 PRO C 37 -1 N VAL C 36 O ILE C 83 SHEET 5 AA2 5 TYR C 25 MET C 26 -1 N MET C 26 O GLY C 33 SHEET 1 AA3 3 LEU A 98 ARG A 103 0 SHEET 2 AA3 3 ARG A 106 VAL A 111 -1 O GLY A 110 N LEU A 98 SHEET 3 AA3 3 VAL A 130 LEU A 135 1 O VAL A 130 N LEU A 107 SHEET 1 AA4 4 LEU B 71 LEU B 72 0 SHEET 2 AA4 4 ARG D 60 THR D 71 -1 O THR D 70 N LEU B 71 SHEET 3 AA4 4 GLU D 47 THR D 53 -1 N LEU D 52 O LEU D 61 SHEET 4 AA4 4 LEU D 11 ALA D 14 1 N LEU D 13 O THR D 53 SHEET 1 AA5 5 LEU B 71 LEU B 72 0 SHEET 2 AA5 5 ARG D 60 THR D 71 -1 O THR D 70 N LEU B 71 SHEET 3 AA5 5 GLY D 82 GLN D 86 -1 O GLN D 86 N LYS D 66 SHEET 4 AA5 5 GLY D 33 PRO D 37 -1 N VAL D 36 O ILE D 83 SHEET 5 AA5 5 TYR D 25 MET D 26 -1 N MET D 26 O GLY D 33 SHEET 1 AA6 3 VAL B 97 ARG B 103 0 SHEET 2 AA6 3 ARG B 106 VAL B 111 -1 O GLY B 110 N LEU B 98 SHEET 3 AA6 3 VAL B 130 LEU B 135 1 O VAL B 130 N LEU B 107 SITE 1 AC1 3 ASP C 17 LYS C 18 HOH C 305 SITE 1 AC2 3 SER C 110 ASP C 111 LYS C 112 SITE 1 AC3 3 LYS C 30 GLY C 31 HOH C 340 SITE 1 AC4 4 LYS D 30 GLY D 31 ARG D 97 HOH D 302 SITE 1 AC5 3 ASP D 56 SER D 57 SER D 58 CRYST1 39.063 122.408 62.730 90.00 98.98 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025600 0.000000 0.004045 0.00000 SCALE2 0.000000 0.008169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016139 0.00000 MTRIX1 1 -0.999414 -0.017614 0.029361 -52.31400 1 MTRIX2 1 -0.018711 -0.437203 -0.899168 57.11640 1 MTRIX3 1 0.028675 -0.899190 0.436617 38.37431 1 MTRIX1 2 -0.999706 0.024047 -0.002979 -51.35481 1 MTRIX2 2 -0.007108 -0.408561 -0.912703 58.09416 1 MTRIX3 2 -0.023165 -0.912414 0.408612 37.01668 1