HEADER TRANSPORT PROTEIN 02-FEB-21 7LKQ TITLE THE PILZ(DELTA107-117)-FIMX(GGDEF-EAL) COMPLEX FROM XANTHOMONAS CITRI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIMX(GGDEF-EAL); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: FIMX RESIDUES 255-689 (CONTAINS BOTH GGDEF AND EAL COMPND 6 DOMAINS) PRECEEDED BY 21 RESIDUE N-TERMINAL SEQUENCE CONTAINING COMPND 7 6XHIS-TAG. NO ELECTRON DENSITY OBSERVED FOR GGDEF DOMAIN.; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TYPE IV FIMBRIAE ASSEMBLY PROTEIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 OTHER_DETAILS: PILZ RESIDUES 1-106 (LACKING RESIDUES 107-117) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI; SOURCE 3 ORGANISM_TAXID: 190486; SOURCE 4 STRAIN: 306; SOURCE 5 GENE: XAC2398; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: XANTHOMONAS AXONOPODIS PV. CITRI; SOURCE 10 ORGANISM_TAXID: 190486; SOURCE 11 STRAIN: 306; SOURCE 12 GENE: PILZ, XAC1133; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TYPE IV PILUS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.E.LLONTOP,C.R.GUZZO,C.S.FARAH REVDAT 3 18-OCT-23 7LKQ 1 REMARK REVDAT 2 01-SEP-21 7LKQ 1 JRNL REVDAT 1 11-AUG-21 7LKQ 0 JRNL AUTH E.E.LLONTOP,W.CENENS,D.C.FAVARO,G.G.SGRO,R.K.SALINAS, JRNL AUTH 2 C.R.GUZZO,C.S.FARAH JRNL TITL THE PILB-PILZ-FIMX REGULATORY COMPLEX OF THE TYPE IV PILUS JRNL TITL 2 FROM XANTHOMONAS CITRI. JRNL REF PLOS PATHOG. V. 17 09808 2021 JRNL REFN ESSN 1553-7374 JRNL PMID 34398935 JRNL DOI 10.1371/JOURNAL.PPAT.1009808 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7900 - 5.3900 1.00 2510 113 0.2698 0.2881 REMARK 3 2 5.3900 - 4.2800 1.00 2356 125 0.2165 0.2380 REMARK 3 3 4.2800 - 3.7400 1.00 2309 140 0.2165 0.2671 REMARK 3 4 3.7400 - 3.4000 1.00 2287 121 0.2542 0.3865 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.497 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.065 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 95.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2798 REMARK 3 ANGLE : 1.184 3814 REMARK 3 CHIRALITY : 0.053 419 REMARK 3 PLANARITY : 0.008 491 REMARK 3 DIHEDRAL : 26.858 992 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9964 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4FOU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 0.1 M MES PH 6.5, REMARK 280 1.6 M MGSO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 48.05000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 48.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.16700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 48.05000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 48.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.16700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 48.05000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.05000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.16700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 48.05000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.05000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.16700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 96.10000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 96.10000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 255 REMARK 465 GLU A 256 REMARK 465 PHE A 257 REMARK 465 ASP A 258 REMARK 465 PRO A 259 REMARK 465 GLU A 260 REMARK 465 LEU A 261 REMARK 465 ALA A 262 REMARK 465 ARG A 263 REMARK 465 GLU A 264 REMARK 465 VAL A 265 REMARK 465 GLU A 266 REMARK 465 ASP A 267 REMARK 465 LEU A 268 REMARK 465 ARG A 269 REMARK 465 GLN A 270 REMARK 465 ARG A 271 REMARK 465 ASP A 272 REMARK 465 GLN A 273 REMARK 465 VAL A 274 REMARK 465 THR A 275 REMARK 465 GLY A 276 REMARK 465 LEU A 277 REMARK 465 LEU A 278 REMARK 465 ASN A 279 REMARK 465 ARG A 280 REMARK 465 PRO A 281 REMARK 465 THR A 282 REMARK 465 PHE A 283 REMARK 465 MET A 284 REMARK 465 VAL A 285 REMARK 465 ALA A 286 REMARK 465 LEU A 287 REMARK 465 GLU A 288 REMARK 465 GLN A 289 REMARK 465 ALA A 290 REMARK 465 VAL A 291 REMARK 465 ALA A 292 REMARK 465 GLN A 293 REMARK 465 ALA A 294 REMARK 465 GLY A 295 REMARK 465 ARG A 296 REMARK 465 SER A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 GLN A 300 REMARK 465 SER A 301 REMARK 465 GLY A 302 REMARK 465 PHE A 303 REMARK 465 LEU A 304 REMARK 465 LEU A 305 REMARK 465 ILE A 306 REMARK 465 GLU A 307 REMARK 465 PRO A 308 REMARK 465 ASP A 309 REMARK 465 HIS A 310 REMARK 465 TYR A 311 REMARK 465 ALA A 312 REMARK 465 ARG A 313 REMARK 465 ILE A 314 REMARK 465 LEU A 315 REMARK 465 PRO A 316 REMARK 465 GLU A 317 REMARK 465 PHE A 318 REMARK 465 GLY A 319 REMARK 465 LEU A 320 REMARK 465 ASP A 321 REMARK 465 SER A 322 REMARK 465 ALA A 323 REMARK 465 ASP A 324 REMARK 465 ALA A 325 REMARK 465 LEU A 326 REMARK 465 ILE A 327 REMARK 465 ALA A 328 REMARK 465 ALA A 329 REMARK 465 LEU A 330 REMARK 465 ALA A 331 REMARK 465 ALA A 332 REMARK 465 HIS A 333 REMARK 465 VAL A 334 REMARK 465 ALA A 335 REMARK 465 SER A 336 REMARK 465 VAL A 337 REMARK 465 LEU A 338 REMARK 465 ASP A 339 REMARK 465 ASP A 340 REMARK 465 SER A 341 REMARK 465 VAL A 342 REMARK 465 LEU A 343 REMARK 465 ALA A 344 REMARK 465 ALA A 345 REMARK 465 ARG A 346 REMARK 465 PHE A 347 REMARK 465 GLY A 348 REMARK 465 GLU A 349 REMARK 465 HIS A 350 REMARK 465 SER A 351 REMARK 465 PHE A 352 REMARK 465 ALA A 353 REMARK 465 LEU A 354 REMARK 465 LEU A 355 REMARK 465 LEU A 356 REMARK 465 ASN A 357 REMARK 465 GLY A 358 REMARK 465 ASN A 359 REMARK 465 TYR A 360 REMARK 465 ALA A 361 REMARK 465 ARG A 362 REMARK 465 THR A 363 REMARK 465 HIS A 364 REMARK 465 ALA A 365 REMARK 465 LEU A 366 REMARK 465 ALA A 367 REMARK 465 GLU A 368 REMARK 465 THR A 369 REMARK 465 VAL A 370 REMARK 465 ARG A 371 REMARK 465 ASN A 372 REMARK 465 ALA A 373 REMARK 465 PHE A 374 REMARK 465 ALA A 375 REMARK 465 GLN A 376 REMARK 465 HIS A 377 REMARK 465 VAL A 378 REMARK 465 PHE A 379 REMARK 465 SER A 380 REMARK 465 VAL A 381 REMARK 465 GLY A 382 REMARK 465 THR A 383 REMARK 465 ARG A 384 REMARK 465 SER A 385 REMARK 465 ALA A 386 REMARK 465 THR A 387 REMARK 465 VAL A 388 REMARK 465 THR A 389 REMARK 465 VAL A 390 REMARK 465 SER A 391 REMARK 465 ILE A 392 REMARK 465 GLY A 393 REMARK 465 GLY A 394 REMARK 465 VAL A 395 REMARK 465 GLN A 396 REMARK 465 ILE A 397 REMARK 465 GLY A 398 REMARK 465 GLU A 399 REMARK 465 LYS A 400 REMARK 465 ILE A 401 REMARK 465 ALA A 402 REMARK 465 SER A 403 REMARK 465 ILE A 404 REMARK 465 GLY A 405 REMARK 465 GLN A 406 REMARK 465 VAL A 407 REMARK 465 LEU A 408 REMARK 465 ASN A 409 REMARK 465 ARG A 410 REMARK 465 GLY A 411 REMARK 465 THR A 412 REMARK 465 GLU A 413 REMARK 465 ALA A 414 REMARK 465 VAL A 415 REMARK 465 ARG A 416 REMARK 465 THR A 417 REMARK 465 THR A 418 REMARK 465 ALA A 419 REMARK 465 GLU A 420 REMARK 465 LEU A 421 REMARK 465 GLY A 422 REMARK 465 GLY A 423 REMARK 465 ASN A 424 REMARK 465 ALA A 425 REMARK 465 VAL A 426 REMARK 465 SER A 427 REMARK 465 ILE A 428 REMARK 465 TYR A 429 REMARK 465 ASP A 430 REMARK 465 PRO A 431 REMARK 465 ALA A 432 REMARK 465 ALA A 433 REMARK 465 ALA A 434 REMARK 465 ASP A 435 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 MET B 4 REMARK 465 ASN B 5 REMARK 465 ALA B 6 REMARK 465 ARG B 7 REMARK 465 GLN B 8 REMARK 465 ALA B 73 REMARK 465 GLY B 74 REMARK 465 ALA B 75 REMARK 465 GLN B 76 REMARK 465 GLY B 77 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 436 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 484 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 499 CG CD OE1 OE2 REMARK 470 ARG A 630 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 631 CG OD1 OD2 REMARK 470 GLU A 634 CG CD OE1 OE2 REMARK 470 GLU A 638 CG CD OE1 OE2 REMARK 470 ARG A 642 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 56 CG OD1 OD2 REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 LYS B 99 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 447 CG CD OE1 OE2 REMARK 480 GLU A 451 CG CD OE1 OE2 REMARK 480 GLU A 471 CG CD OE1 OE2 REMARK 480 GLU A 506 CG CD OE1 OE2 REMARK 480 ASN A 685 OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 438 OH TYR B 22 1.98 REMARK 500 O GLN A 544 OG1 THR A 548 2.11 REMARK 500 OD1 ASP A 625 OG SER A 632 2.15 REMARK 500 O LEU A 583 OG SER A 587 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 471 75.06 -117.62 REMARK 500 GLU A 474 95.79 -66.54 REMARK 500 HIS A 575 79.07 -118.70 REMARK 500 SER A 600 -113.78 53.91 REMARK 500 SER A 628 64.24 -152.00 REMARK 500 ALA A 678 140.08 -173.41 REMARK 500 ASN A 685 14.78 -140.24 REMARK 500 PHE A 688 -75.62 -63.40 REMARK 500 LYS B 30 99.80 -64.56 REMARK 500 ILE B 68 10.82 -140.83 REMARK 500 ALA B 80 161.73 63.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 7LKQ A 255 689 UNP Q8PJX9 Q8PJX9_XANAC 255 689 DBREF 7LKQ B 1 106 UNP Q8PND9 Q8PND9_XANAC 1 106 SEQRES 1 A 435 GLU GLU PHE ASP PRO GLU LEU ALA ARG GLU VAL GLU ASP SEQRES 2 A 435 LEU ARG GLN ARG ASP GLN VAL THR GLY LEU LEU ASN ARG SEQRES 3 A 435 PRO THR PHE MET VAL ALA LEU GLU GLN ALA VAL ALA GLN SEQRES 4 A 435 ALA GLY ARG SER GLU GLY GLN SER GLY PHE LEU LEU ILE SEQRES 5 A 435 GLU PRO ASP HIS TYR ALA ARG ILE LEU PRO GLU PHE GLY SEQRES 6 A 435 LEU ASP SER ALA ASP ALA LEU ILE ALA ALA LEU ALA ALA SEQRES 7 A 435 HIS VAL ALA SER VAL LEU ASP ASP SER VAL LEU ALA ALA SEQRES 8 A 435 ARG PHE GLY GLU HIS SER PHE ALA LEU LEU LEU ASN GLY SEQRES 9 A 435 ASN TYR ALA ARG THR HIS ALA LEU ALA GLU THR VAL ARG SEQRES 10 A 435 ASN ALA PHE ALA GLN HIS VAL PHE SER VAL GLY THR ARG SEQRES 11 A 435 SER ALA THR VAL THR VAL SER ILE GLY GLY VAL GLN ILE SEQRES 12 A 435 GLY GLU LYS ILE ALA SER ILE GLY GLN VAL LEU ASN ARG SEQRES 13 A 435 GLY THR GLU ALA VAL ARG THR THR ALA GLU LEU GLY GLY SEQRES 14 A 435 ASN ALA VAL SER ILE TYR ASP PRO ALA ALA ALA ASP ARG SEQRES 15 A 435 ALA GLU GLU GLU ARG ILE GLU ARG TRP VAL GLU GLN LEU SEQRES 16 A 435 ARG GLU ALA LEU VAL GLY ASP GLY PHE LEU LEU HIS TYR SEQRES 17 A 435 GLN PRO VAL LEU ASN LEU GLN GLY GLU PRO LEU GLU LEU SEQRES 18 A 435 TYR GLN ALA PHE LEU ARG LEU GLU ARG ASN GLY GLU MET SEQRES 19 A 435 MET SER PRO ASN ALA PHE MET ALA ILE ALA GLU GLU HIS SEQRES 20 A 435 ASP LEU VAL THR GLU ILE ASP ARG TRP VAL VAL ALA ARG SEQRES 21 A 435 ALA ILE ARG GLN LEU GLY GLU ARG GLN ARG ALA GLY HIS SEQRES 22 A 435 LYS THR HIS LEU LEU VAL ARG ILE GLY PRO ASN SER PHE SEQRES 23 A 435 SER ASP PRO GLN MET ILE ASP THR ILE ARG GLU GLN LEU SEQRES 24 A 435 ALA VAL TYR GLY VAL PRO GLY GLU ARG LEU TRP LEU GLN SEQRES 25 A 435 THR PRO GLU SER LYS VAL PHE THR HIS LEU ARG ASN ALA SEQRES 26 A 435 GLN GLN PHE LEU ALA ALA VAL SER ALA MET ASP CYS LYS SEQRES 27 A 435 VAL GLY LEU GLU GLN PHE GLY SER GLY LEU ASP SER PHE SEQRES 28 A 435 GLN LEU LEU ALA HIS PHE HIS PRO ALA PHE LEU LYS LEU SEQRES 29 A 435 ASP ARG GLY ILE THR GLY ASP ILE ALA SER ALA ARG ASP SEQRES 30 A 435 SER GLN GLU LYS ILE ARG GLU ILE THR SER ARG ALA GLN SEQRES 31 A 435 PRO ALA GLY ILE LEU THR MET ALA GLU PHE VAL ALA ASP SEQRES 32 A 435 ALA GLN SER MET SER SER PHE PHE SER ALA GLY VAL ASP SEQRES 33 A 435 TYR VAL GLN GLY ASP PHE VAL ALA PRO THR GLY PRO LEU SEQRES 34 A 435 MET ASN TYR GLU PHE GLY SEQRES 1 B 106 MET SER ALA MET ASN ALA ARG GLN GLY ILE LEU SER LEU SEQRES 2 B 106 ALA LEU LYS ASP LYS PRO ALA LEU TYR SER ALA TYR MET SEQRES 3 B 106 PRO PHE VAL LYS GLY GLY GLY ILE PHE VAL PRO THR PRO SEQRES 4 B 106 LYS ARG TYR MET LEU GLY ASP GLU VAL PHE LEU LEU LEU SEQRES 5 B 106 THR LEU PRO ASP SER SER GLU ARG LEU PRO VAL ALA GLY SEQRES 6 B 106 LYS VAL ILE TRP THR THR PRO ALA GLY ALA GLN GLY ASN SEQRES 7 B 106 ARG ALA ALA GLY ILE GLY VAL GLN PHE PRO ASP GLY PRO SEQRES 8 B 106 GLU GLY GLU ALA VAL ARG ASN LYS ILE GLU THR LEU LEU SEQRES 9 B 106 ALA GLY HET C2E A 701 46 HET SO4 A 702 5 HET SO4 A 703 5 HET MG A 704 1 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E C20 H24 N10 O14 P2 FORMUL 4 SO4 5(O4 S 2-) FORMUL 6 MG MG 2+ HELIX 1 AA1 GLU A 438 GLY A 455 1 18 HELIX 2 AA2 SER A 490 GLU A 500 1 11 HELIX 3 AA3 LEU A 503 ALA A 525 1 23 HELIX 4 AA4 PRO A 537 SER A 541 5 5 HELIX 5 AA5 ASP A 542 GLY A 557 1 16 HELIX 6 AA6 PRO A 559 GLU A 561 5 3 HELIX 7 AA7 GLU A 569 HIS A 575 1 7 HELIX 8 AA8 HIS A 575 ALA A 588 1 14 HELIX 9 AA9 ASP A 603 PHE A 611 1 9 HELIX 10 AB1 ASP A 619 GLY A 624 1 6 HELIX 11 AB2 ASP A 625 ALA A 629 5 5 HELIX 12 AB3 ARG A 630 GLN A 644 1 15 HELIX 13 AB4 ASP A 657 ALA A 667 1 11 HELIX 14 AB5 ASP B 17 ALA B 24 1 8 HELIX 15 AB6 GLY B 90 ALA B 105 1 16 SHEET 1 AA1 8 ILE B 10 ALA B 14 0 SHEET 2 AA1 8 GLU B 47 THR B 53 1 O THR B 53 N LEU B 13 SHEET 3 AA1 8 ARG B 60 THR B 70 -1 O LEU B 61 N LEU B 52 SHEET 4 AA1 8 GLU A 487 MET A 489 -1 N MET A 488 O THR B 70 SHEET 5 AA1 8 LEU A 475 ARG A 484 -1 N ARG A 484 O GLU A 487 SHEET 6 AA1 8 GLY B 82 GLN B 86 0 SHEET 7 AA1 8 GLY B 33 PRO B 37 -1 N VAL B 36 O ILE B 83 SHEET 8 AA1 8 TYR B 25 MET B 26 -1 N MET B 26 O GLY B 33 SHEET 1 AA214 ILE B 10 ALA B 14 0 SHEET 2 AA214 GLU B 47 THR B 53 1 O THR B 53 N LEU B 13 SHEET 3 AA214 ARG B 60 THR B 70 -1 O LEU B 61 N LEU B 52 SHEET 4 AA214 HIS A 530 ARG A 534 0 SHEET 5 AA214 LEU A 563 PRO A 568 1 O GLN A 566 N VAL A 533 SHEET 6 AA214 LYS A 592 PHE A 598 1 O LYS A 592 N LEU A 565 SHEET 7 AA214 PHE A 615 LEU A 618 1 O LYS A 617 N PHE A 598 SHEET 8 AA214 LEU A 649 ALA A 652 1 O LEU A 649 N LEU A 616 SHEET 9 AA214 TYR A 671 VAL A 672 1 O TYR A 671 N ALA A 652 SHEET 10 AA214 PHE A 458 ASN A 467 -1 N LEU A 466 O VAL A 672 SHEET 11 AA214 LEU A 475 ARG A 484 -1 O PHE A 479 N HIS A 461 SHEET 12 AA214 GLY B 82 GLN B 86 0 SHEET 13 AA214 GLY B 33 PRO B 37 -1 N VAL B 36 O ILE B 83 SHEET 14 AA214 TYR B 25 MET B 26 -1 N MET B 26 O GLY B 33 CRYST1 96.100 96.100 146.334 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010406 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010406 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006834 0.00000