HEADER TRANSFERASE 03-FEB-21 7LL3 TITLE S-ADENOSYLMETHIONINE SYNTHETASE CO-CRYSTALLIZED WITH UPPNHP COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADOMET SYNTHASE,MAT,METHIONINE ADENOSYLTRANSFERASE; COMPND 5 EC: 2.5.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI 908573; SOURCE 3 ORGANISM_TAXID: 1268998; SOURCE 4 GENE: METK, HMPREF1611_00479; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS S-ADENOSYLMETHIONINE SYNTHETASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.L.TAN,C.J.JACKSON REVDAT 3 18-OCT-23 7LL3 1 REMARK REVDAT 2 02-MAR-22 7LL3 1 JRNL REVDAT 1 31-MAR-21 7LL3 0 JRNL AUTH M.GADE,L.L.TAN,A.M.DAMRY,M.SANDHU,J.S.BROCK,A.DELANEY, JRNL AUTH 2 A.VILLAR-BRIONES,C.J.JACKSON,P.LAURINO JRNL TITL SUBSTRATE DYNAMICS CONTRIBUTE TO ENZYMATIC SPECIFICITY IN JRNL TITL 2 HUMAN AND BACTERIAL METHIONINE ADENOSYLTRANSFERASES. JRNL REF JACS AU V. 1 2349 2021 JRNL REFN ESSN 2691-3704 JRNL PMID 34977903 JRNL DOI 10.1021/JACSAU.1C00464 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 63580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9800 - 6.3600 1.00 2944 128 0.2016 0.2107 REMARK 3 2 6.3600 - 5.0500 1.00 2715 174 0.1988 0.2182 REMARK 3 3 5.0500 - 4.4200 1.00 2669 152 0.1661 0.1816 REMARK 3 4 4.4200 - 4.0100 1.00 2698 130 0.1763 0.1892 REMARK 3 5 4.0100 - 3.7300 1.00 2645 146 0.1891 0.2118 REMARK 3 6 3.7200 - 3.5100 1.00 2656 129 0.2105 0.2401 REMARK 3 7 3.5100 - 3.3300 1.00 2634 128 0.2249 0.2620 REMARK 3 8 3.3300 - 3.1800 1.00 2602 151 0.2362 0.2888 REMARK 3 9 3.1800 - 3.0600 1.00 2658 110 0.2459 0.2617 REMARK 3 10 3.0600 - 2.9600 1.00 2607 135 0.2532 0.2286 REMARK 3 11 2.9600 - 2.8600 1.00 2606 131 0.2475 0.2941 REMARK 3 12 2.8600 - 2.7800 1.00 2601 141 0.2406 0.3321 REMARK 3 13 2.7800 - 2.7100 1.00 2570 158 0.2424 0.2663 REMARK 3 14 2.7100 - 2.6400 1.00 2603 128 0.2527 0.2977 REMARK 3 15 2.6400 - 2.5800 1.00 2565 150 0.2530 0.2833 REMARK 3 16 2.5800 - 2.5300 1.00 2588 144 0.2603 0.3183 REMARK 3 17 2.5300 - 2.4800 1.00 2560 149 0.2768 0.3264 REMARK 3 18 2.4800 - 2.4300 1.00 2602 132 0.2839 0.3351 REMARK 3 19 2.4300 - 2.3900 1.00 2573 133 0.2975 0.3565 REMARK 3 20 2.3900 - 2.3500 1.00 2581 147 0.3050 0.3179 REMARK 3 21 2.3500 - 2.3100 1.00 2548 142 0.3044 0.3165 REMARK 3 22 2.3100 - 2.2700 1.00 2591 136 0.3410 0.4117 REMARK 3 23 2.2700 - 2.2400 1.00 2574 116 0.3798 0.4086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.338 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6052 REMARK 3 ANGLE : 0.588 8220 REMARK 3 CHIRALITY : 0.045 911 REMARK 3 PLANARITY : 0.004 1068 REMARK 3 DIHEDRAL : 18.050 2246 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2554 40.2196 16.6878 REMARK 3 T TENSOR REMARK 3 T11: 0.5607 T22: 0.6724 REMARK 3 T33: 0.4867 T12: 0.0752 REMARK 3 T13: 0.0958 T23: 0.1864 REMARK 3 L TENSOR REMARK 3 L11: 2.8634 L22: 4.3818 REMARK 3 L33: 1.0728 L12: -0.8810 REMARK 3 L13: -0.0428 L23: 0.1440 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: 0.4012 S13: 0.0178 REMARK 3 S21: -0.4082 S22: -0.4386 S23: -0.2800 REMARK 3 S31: 0.0386 S32: 0.1771 S33: 0.3925 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7277 44.1545 6.9757 REMARK 3 T TENSOR REMARK 3 T11: 0.9336 T22: 0.5729 REMARK 3 T33: 0.5924 T12: -0.0166 REMARK 3 T13: 0.1932 T23: 0.1102 REMARK 3 L TENSOR REMARK 3 L11: 7.1445 L22: 5.7811 REMARK 3 L33: 2.6019 L12: -6.4451 REMARK 3 L13: -4.2669 L23: 3.9853 REMARK 3 S TENSOR REMARK 3 S11: 0.2929 S12: 0.5968 S13: 0.3027 REMARK 3 S21: -0.7383 S22: 0.0893 S23: -0.7650 REMARK 3 S31: 0.2072 S32: -0.1814 S33: -0.6292 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.0721 22.1799 26.7588 REMARK 3 T TENSOR REMARK 3 T11: 0.6574 T22: 0.6169 REMARK 3 T33: 0.6486 T12: 0.0664 REMARK 3 T13: 0.1946 T23: 0.2187 REMARK 3 L TENSOR REMARK 3 L11: 2.3844 L22: 2.0234 REMARK 3 L33: 1.5049 L12: 0.4423 REMARK 3 L13: -0.1342 L23: 0.3125 REMARK 3 S TENSOR REMARK 3 S11: -0.2572 S12: -0.1081 S13: -0.6566 REMARK 3 S21: -0.2916 S22: 0.0038 S23: 0.1458 REMARK 3 S31: 0.4692 S32: -0.0457 S33: 0.2398 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8390 23.3874 10.3562 REMARK 3 T TENSOR REMARK 3 T11: 0.7861 T22: 0.6900 REMARK 3 T33: 0.6812 T12: 0.0433 REMARK 3 T13: 0.2509 T23: 0.1051 REMARK 3 L TENSOR REMARK 3 L11: 2.2455 L22: 3.1759 REMARK 3 L33: 3.3020 L12: 0.4024 REMARK 3 L13: -1.7074 L23: -0.7477 REMARK 3 S TENSOR REMARK 3 S11: -0.1689 S12: 0.2293 S13: -0.4034 REMARK 3 S21: -0.2244 S22: 0.2171 S23: -0.1946 REMARK 3 S31: 0.2121 S32: -0.0935 S33: -0.0691 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8440 49.4372 35.9065 REMARK 3 T TENSOR REMARK 3 T11: 0.7285 T22: 0.8522 REMARK 3 T33: 0.8542 T12: -0.1157 REMARK 3 T13: -0.2879 T23: 0.3695 REMARK 3 L TENSOR REMARK 3 L11: 2.3763 L22: 4.5711 REMARK 3 L33: 5.0813 L12: -0.8694 REMARK 3 L13: 0.9311 L23: -2.8203 REMARK 3 S TENSOR REMARK 3 S11: -0.5527 S12: 0.2681 S13: 0.5844 REMARK 3 S21: 0.6162 S22: -0.5007 S23: -0.8520 REMARK 3 S31: -0.8433 S32: 0.7096 S33: 0.4098 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4580 33.9115 35.2666 REMARK 3 T TENSOR REMARK 3 T11: 0.4732 T22: 1.2814 REMARK 3 T33: 1.2405 T12: 0.0302 REMARK 3 T13: 0.0979 T23: 0.6664 REMARK 3 L TENSOR REMARK 3 L11: 2.5483 L22: 4.2452 REMARK 3 L33: 1.6587 L12: -2.1583 REMARK 3 L13: 0.6645 L23: -0.4029 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: 0.3490 S13: 0.6201 REMARK 3 S21: -0.1244 S22: -0.6961 S23: -1.7266 REMARK 3 S31: 0.0285 S32: 0.9516 S33: 0.2725 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254613. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63722 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 43.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 32.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 8000, 0.1 M BIS-TRIS PH 6.5, REMARK 280 20% ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.46967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 192.93933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 144.70450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 241.17417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.23483 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.46967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 192.93933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 241.17417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 144.70450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 48.23483 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -61.82750 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 107.08837 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 48.23483 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 870 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLN A 98 REMARK 465 SER A 99 REMARK 465 PRO A 100 REMARK 465 ASP A 101 REMARK 465 ILE A 102 REMARK 465 ASN A 103 REMARK 465 LYS A 383 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 LYS B 2 REMARK 465 HIS B 3 REMARK 465 LEU B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 55 O HOH B 801 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 47 113.00 -35.31 REMARK 500 ALA A 94 44.59 -140.59 REMARK 500 ASP A 238 113.64 -169.96 REMARK 500 ASP A 238 116.12 -169.96 REMARK 500 THR A 250 -97.49 -115.05 REMARK 500 THR B 47 107.98 -50.17 REMARK 500 LYS B 97 -152.44 -92.05 REMARK 500 ILE B 102 -70.72 -135.18 REMARK 500 VAL B 106 -71.15 -61.22 REMARK 500 ASP B 107 -35.26 83.09 REMARK 500 ASN B 128 30.88 -84.90 REMARK 500 ARG B 147 3.18 -67.52 REMARK 500 GLN B 148 2.14 -65.63 REMARK 500 PRO B 158 -133.75 4.12 REMARK 500 ASP B 173 -68.70 -101.43 REMARK 500 ALA B 182 126.30 -173.28 REMARK 500 GLU B 192 31.82 -87.03 REMARK 500 GLU B 192 37.84 -87.56 REMARK 500 ILE B 193 138.45 -171.66 REMARK 500 LEU B 211 168.92 70.87 REMARK 500 PRO B 212 28.94 -76.46 REMARK 500 GLU B 214 40.83 -77.26 REMARK 500 TRP B 215 0.50 -66.67 REMARK 500 THR B 217 -164.55 -67.24 REMARK 500 LYS B 245 41.62 -145.51 REMARK 500 THR B 250 -103.69 -117.35 REMARK 500 ALA B 356 -76.87 -98.78 REMARK 500 TYR B 357 61.53 -118.44 REMARK 500 THR B 370 44.99 -108.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 706 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PPK A 705 O1B REMARK 620 2 GLU B 42 OE2 84.7 REMARK 620 3 HOH B 801 O 123.9 124.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 707 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PPK A 705 O3G REMARK 620 2 HOH A 832 O 133.9 REMARK 620 N 1 DBREF 7LL3 A 0 383 UNP V0ZE41 V0ZE41_ECOLX 1 384 DBREF 7LL3 B 0 383 UNP V0ZE41 V0ZE41_ECOLX 1 384 SEQRES 1 A 384 MET ALA LYS HIS LEU PHE THR SER GLU SER VAL SER GLU SEQRES 2 A 384 GLY HIS PRO ASP LYS ILE ALA ASP GLN ILE SER ASP ALA SEQRES 3 A 384 VAL LEU ASP ALA ILE LEU GLU GLN ASP PRO LYS ALA ARG SEQRES 4 A 384 VAL ALA CYS GLU THR TYR VAL LYS THR GLY MET VAL LEU SEQRES 5 A 384 VAL GLY GLY GLU ILE THR THR SER ALA TRP VAL ASP ILE SEQRES 6 A 384 GLU GLU ILE THR ARG ASN THR VAL ARG GLU ILE GLY TYR SEQRES 7 A 384 VAL HIS SER ASP MET GLY PHE ASP ALA ASN SER CYS ALA SEQRES 8 A 384 VAL LEU SER ALA ILE GLY LYS GLN SER PRO ASP ILE ASN SEQRES 9 A 384 GLN GLY VAL ASP ARG ALA ASP PRO LEU GLU GLN GLY ALA SEQRES 10 A 384 GLY ASP GLN GLY LEU MET PHE GLY TYR ALA THR ASN GLU SEQRES 11 A 384 THR ASP VAL LEU MET PRO ALA PRO ILE THR TYR ALA HIS SEQRES 12 A 384 ARG LEU VAL GLN ARG GLN ALA GLU VAL ARG LYS ASN GLY SEQRES 13 A 384 THR LEU PRO TRP LEU ARG PRO ASP ALA LYS SER GLN VAL SEQRES 14 A 384 THR PHE GLN TYR ASP ASP GLY LYS ILE VAL GLY ILE ASP SEQRES 15 A 384 ALA VAL VAL LEU SER THR GLN HIS SER GLU GLU ILE ASP SEQRES 16 A 384 GLN LYS SER LEU GLN GLU ALA VAL MET GLU GLU ILE ILE SEQRES 17 A 384 LYS PRO ILE LEU PRO ALA GLU TRP LEU THR SER ALA THR SEQRES 18 A 384 LYS PHE PHE ILE ASN PRO THR GLY ARG PHE VAL ILE GLY SEQRES 19 A 384 GLY PRO MET GLY ASP CYS GLY LEU THR GLY ARG LYS ILE SEQRES 20 A 384 ILE VAL ASP THR TYR GLY GLY MET ALA ARG HIS GLY GLY SEQRES 21 A 384 GLY ALA PHE SER GLY LYS ASP PRO SER LYS VAL ASP ARG SEQRES 22 A 384 SER ALA ALA TYR ALA ALA ARG TYR VAL ALA LYS ASN ILE SEQRES 23 A 384 VAL ALA ALA GLY LEU ALA ASP ARG CYS GLU ILE GLN VAL SEQRES 24 A 384 SER TYR ALA ILE GLY VAL ALA GLU PRO THR SER ILE MET SEQRES 25 A 384 VAL GLU THR PHE GLY THR GLU LYS VAL PRO SER GLU GLN SEQRES 26 A 384 LEU THR LEU LEU VAL ARG GLU PHE PHE ASP LEU ARG PRO SEQRES 27 A 384 TYR GLY LEU ILE GLN MET LEU ASP LEU LEU HIS PRO ILE SEQRES 28 A 384 TYR LYS GLU THR ALA ALA TYR GLY HIS PHE GLY ARG GLU SEQRES 29 A 384 HIS PHE PRO TRP GLU LYS THR ASP LYS ALA GLN LEU LEU SEQRES 30 A 384 ARG ASP ALA ALA GLY LEU LYS SEQRES 1 B 384 MET ALA LYS HIS LEU PHE THR SER GLU SER VAL SER GLU SEQRES 2 B 384 GLY HIS PRO ASP LYS ILE ALA ASP GLN ILE SER ASP ALA SEQRES 3 B 384 VAL LEU ASP ALA ILE LEU GLU GLN ASP PRO LYS ALA ARG SEQRES 4 B 384 VAL ALA CYS GLU THR TYR VAL LYS THR GLY MET VAL LEU SEQRES 5 B 384 VAL GLY GLY GLU ILE THR THR SER ALA TRP VAL ASP ILE SEQRES 6 B 384 GLU GLU ILE THR ARG ASN THR VAL ARG GLU ILE GLY TYR SEQRES 7 B 384 VAL HIS SER ASP MET GLY PHE ASP ALA ASN SER CYS ALA SEQRES 8 B 384 VAL LEU SER ALA ILE GLY LYS GLN SER PRO ASP ILE ASN SEQRES 9 B 384 GLN GLY VAL ASP ARG ALA ASP PRO LEU GLU GLN GLY ALA SEQRES 10 B 384 GLY ASP GLN GLY LEU MET PHE GLY TYR ALA THR ASN GLU SEQRES 11 B 384 THR ASP VAL LEU MET PRO ALA PRO ILE THR TYR ALA HIS SEQRES 12 B 384 ARG LEU VAL GLN ARG GLN ALA GLU VAL ARG LYS ASN GLY SEQRES 13 B 384 THR LEU PRO TRP LEU ARG PRO ASP ALA LYS SER GLN VAL SEQRES 14 B 384 THR PHE GLN TYR ASP ASP GLY LYS ILE VAL GLY ILE ASP SEQRES 15 B 384 ALA VAL VAL LEU SER THR GLN HIS SER GLU GLU ILE ASP SEQRES 16 B 384 GLN LYS SER LEU GLN GLU ALA VAL MET GLU GLU ILE ILE SEQRES 17 B 384 LYS PRO ILE LEU PRO ALA GLU TRP LEU THR SER ALA THR SEQRES 18 B 384 LYS PHE PHE ILE ASN PRO THR GLY ARG PHE VAL ILE GLY SEQRES 19 B 384 GLY PRO MET GLY ASP CYS GLY LEU THR GLY ARG LYS ILE SEQRES 20 B 384 ILE VAL ASP THR TYR GLY GLY MET ALA ARG HIS GLY GLY SEQRES 21 B 384 GLY ALA PHE SER GLY LYS ASP PRO SER LYS VAL ASP ARG SEQRES 22 B 384 SER ALA ALA TYR ALA ALA ARG TYR VAL ALA LYS ASN ILE SEQRES 23 B 384 VAL ALA ALA GLY LEU ALA ASP ARG CYS GLU ILE GLN VAL SEQRES 24 B 384 SER TYR ALA ILE GLY VAL ALA GLU PRO THR SER ILE MET SEQRES 25 B 384 VAL GLU THR PHE GLY THR GLU LYS VAL PRO SER GLU GLN SEQRES 26 B 384 LEU THR LEU LEU VAL ARG GLU PHE PHE ASP LEU ARG PRO SEQRES 27 B 384 TYR GLY LEU ILE GLN MET LEU ASP LEU LEU HIS PRO ILE SEQRES 28 B 384 TYR LYS GLU THR ALA ALA TYR GLY HIS PHE GLY ARG GLU SEQRES 29 B 384 HIS PHE PRO TRP GLU LYS THR ASP LYS ALA GLN LEU LEU SEQRES 30 B 384 ARG ASP ALA ALA GLY LEU LYS HET EDO A 701 4 HET EDO A 702 4 HET EDO A 703 4 HET UNP A 704 29 HET PPK A 705 14 HET MG A 706 1 HET MG A 707 1 HET EDO B 701 4 HET EDO B 702 4 HET PPK B 703 13 HETNAM EDO 1,2-ETHANEDIOL HETNAM UNP 5'-O-[(R)-HYDROXY{[(S)-HYDROXY(PHOSPHONOAMINO) HETNAM 2 UNP PHOSPHORYL]OXY}PHOSPHORYL]URIDINE HETNAM PPK (DIPHOSPHONO)AMINOPHOSPHONIC ACID HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 6 UNP C9 H16 N3 O14 P3 FORMUL 7 PPK 2(H6 N O9 P3) FORMUL 8 MG 2(MG 2+) FORMUL 13 HOH *133(H2 O) HELIX 1 AA1 HIS A 14 GLU A 32 1 19 HELIX 2 AA2 ASP A 63 GLY A 76 1 14 HELIX 3 AA3 SER A 80 GLY A 83 5 4 HELIX 4 AA4 ASP A 110 GLN A 114 5 5 HELIX 5 AA5 PRO A 135 ASN A 154 1 20 HELIX 6 AA6 ASP A 194 ILE A 206 1 13 HELIX 7 AA7 PRO A 212 LEU A 216 5 5 HELIX 8 AA8 LYS A 269 ALA A 288 1 20 HELIX 9 AA9 PRO A 321 PHE A 333 1 13 HELIX 10 AB1 ARG A 336 ASP A 345 1 10 HELIX 11 AB2 TYR A 351 ALA A 356 5 6 HELIX 12 AB3 PHE A 365 LYS A 369 5 5 HELIX 13 AB4 LYS A 372 ALA A 379 1 8 HELIX 14 AB5 HIS B 14 ASP B 34 1 21 HELIX 15 AB6 ASP B 63 GLY B 76 1 14 HELIX 16 AB7 SER B 80 GLY B 83 5 4 HELIX 17 AB8 ASP B 110 GLN B 114 5 5 HELIX 18 AB9 PRO B 135 ARG B 147 1 13 HELIX 19 AC1 GLN B 148 ARG B 152 5 5 HELIX 20 AC2 ASP B 194 GLU B 205 1 12 HELIX 21 AC3 LYS B 245 THR B 250 1 6 HELIX 22 AC4 LYS B 269 ALA B 288 1 20 HELIX 23 AC5 PRO B 321 PHE B 333 1 13 HELIX 24 AC6 ARG B 336 ASP B 345 1 10 HELIX 25 AC7 PHE B 365 LYS B 369 5 5 HELIX 26 AC8 LYS B 372 GLY B 381 1 10 SHEET 1 AA1 4 HIS A 3 VAL A 10 0 SHEET 2 AA1 4 LEU A 160 ASP A 173 -1 O TYR A 172 N HIS A 3 SHEET 3 AA1 4 LYS A 176 HIS A 189 -1 O GLN A 188 N ASP A 163 SHEET 4 AA1 4 LYS A 221 ILE A 224 1 O PHE A 223 N VAL A 183 SHEET 1 AA2 4 ALA A 90 GLY A 96 0 SHEET 2 AA2 4 MET A 49 THR A 57 1 N VAL A 52 O ALA A 94 SHEET 3 AA2 4 ARG A 38 LYS A 46 -1 N GLU A 42 O GLY A 53 SHEET 4 AA2 4 GLY A 240 LEU A 241 -1 O GLY A 240 N VAL A 45 SHEET 1 AA3 2 VAL A 78 HIS A 79 0 SHEET 2 AA3 2 PHE A 84 ASP A 85 -1 O PHE A 84 N HIS A 79 SHEET 1 AA4 3 GLY A 120 THR A 127 0 SHEET 2 AA4 3 ARG A 293 TYR A 300 -1 O VAL A 298 N MET A 122 SHEET 3 AA4 3 SER A 309 GLU A 313 -1 O GLU A 313 N GLU A 295 SHEET 1 AA5 4 THR B 6 VAL B 10 0 SHEET 2 AA5 4 ALA B 164 TYR B 172 -1 O SER B 166 N SER B 9 SHEET 3 AA5 4 ILE B 177 THR B 187 -1 O VAL B 184 N GLN B 167 SHEET 4 AA5 4 LEU B 216 ILE B 224 1 O PHE B 223 N VAL B 183 SHEET 1 AA6 4 ALA B 90 GLY B 96 0 SHEET 2 AA6 4 MET B 49 THR B 57 1 N VAL B 52 O LEU B 92 SHEET 3 AA6 4 ARG B 38 LYS B 46 -1 N TYR B 44 O LEU B 51 SHEET 4 AA6 4 GLY B 240 LEU B 241 -1 O GLY B 240 N VAL B 45 SHEET 1 AA7 2 VAL B 78 HIS B 79 0 SHEET 2 AA7 2 PHE B 84 ASP B 85 -1 O PHE B 84 N HIS B 79 SHEET 1 AA8 3 GLY B 120 THR B 127 0 SHEET 2 AA8 3 ARG B 293 TYR B 300 -1 O VAL B 298 N MET B 122 SHEET 3 AA8 3 SER B 309 GLU B 313 -1 O GLU B 313 N GLU B 295 LINK O1B PPK A 705 MG MG A 706 1555 1555 2.56 LINK O3G PPK A 705 MG MG A 707 1555 1555 2.95 LINK MG MG A 706 OE2 GLU B 42 1555 1555 2.78 LINK MG MG A 706 O HOH B 801 1555 1555 2.48 LINK MG MG A 707 O HOH A 832 1555 1555 2.91 CRYST1 123.655 123.655 289.409 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008087 0.004669 0.000000 0.00000 SCALE2 0.000000 0.009338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003455 0.00000