HEADER VIRAL PROTEIN 05-FEB-21 7LM4 TITLE THE CRYSTAL STRUCTURE OF THE I38T MUTANT PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH SJ000988503 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SWL SOURCE 3 A/CALIFORNIA/04/2009 H1N1); SOURCE 4 ORGANISM_TAXID: 641501; SOURCE 5 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 6 GENE: PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,P.J.SLAVISH,S.JAYARAMAN,Z.RANKOVIC,S.W.WHITE REVDAT 3 18-OCT-23 7LM4 1 REMARK REVDAT 2 11-OCT-23 7LM4 1 JRNL REVDAT 1 09-FEB-22 7LM4 0 JRNL AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, JRNL AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, JRNL AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, JRNL AUTH 4 S.W.WHITE JRNL TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF JRNL TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS JRNL TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE JRNL TITL 4 RESISTANCE POTENTIAL. JRNL REF EUR.J.MED.CHEM. V. 247 15035 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36603507 JRNL DOI 10.1016/J.EJMECH.2022.115035 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX. REMARK 1 REF ACTA CRYSTALLOGR D STRUCT V. 75 861 2019 REMARK 1 REF 2 BIOL REMARK 1 REFN ISSN 2059-7983 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 11434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4100 - 3.7300 1.00 2845 146 0.1821 0.2260 REMARK 3 2 3.7300 - 2.9600 1.00 2703 138 0.2167 0.2550 REMARK 3 3 2.9600 - 2.5900 1.00 2699 112 0.2645 0.2781 REMARK 3 4 2.5900 - 2.3500 1.00 2651 140 0.2671 0.3316 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.287 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.787 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1588 REMARK 3 ANGLE : 0.614 2147 REMARK 3 CHIRALITY : 0.043 223 REMARK 3 PLANARITY : 0.004 270 REMARK 3 DIHEDRAL : 19.599 579 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1661 -28.7736 -1.0892 REMARK 3 T TENSOR REMARK 3 T11: 0.7738 T22: 0.6311 REMARK 3 T33: 0.6349 T12: 0.0109 REMARK 3 T13: -0.1259 T23: 0.0946 REMARK 3 L TENSOR REMARK 3 L11: 8.3170 L22: 6.4041 REMARK 3 L33: 3.3911 L12: 2.2514 REMARK 3 L13: -4.7839 L23: 0.5676 REMARK 3 S TENSOR REMARK 3 S11: 0.2904 S12: -0.6485 S13: -0.4143 REMARK 3 S21: 2.0137 S22: 0.6839 S23: -0.6108 REMARK 3 S31: -0.1646 S32: 0.4798 S33: -1.0287 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5496 -39.2342 -4.1445 REMARK 3 T TENSOR REMARK 3 T11: 0.6938 T22: 0.8706 REMARK 3 T33: 0.6692 T12: 0.0510 REMARK 3 T13: -0.0665 T23: 0.2926 REMARK 3 L TENSOR REMARK 3 L11: 6.0976 L22: 9.4658 REMARK 3 L33: 2.7401 L12: -1.3630 REMARK 3 L13: 1.8322 L23: 4.1246 REMARK 3 S TENSOR REMARK 3 S11: 0.1814 S12: -0.4266 S13: -0.4042 REMARK 3 S21: 1.1343 S22: 0.0485 S23: -1.3620 REMARK 3 S31: 0.9660 S32: 1.2981 S33: -0.2629 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8640 -36.0585 -14.0914 REMARK 3 T TENSOR REMARK 3 T11: 0.3769 T22: 0.4299 REMARK 3 T33: 0.4756 T12: -0.0632 REMARK 3 T13: 0.0386 T23: 0.1795 REMARK 3 L TENSOR REMARK 3 L11: 5.7760 L22: 4.9389 REMARK 3 L33: 7.6358 L12: 1.7374 REMARK 3 L13: 5.1494 L23: 3.7850 REMARK 3 S TENSOR REMARK 3 S11: -0.1755 S12: -0.1879 S13: 0.1931 REMARK 3 S21: 0.2081 S22: -0.0193 S23: 0.1412 REMARK 3 S31: 0.4784 S32: -0.0584 S33: 0.1232 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1797 -48.4116 -22.0406 REMARK 3 T TENSOR REMARK 3 T11: 0.4142 T22: 0.5517 REMARK 3 T33: 0.4092 T12: -0.0493 REMARK 3 T13: 0.1741 T23: 0.1264 REMARK 3 L TENSOR REMARK 3 L11: 2.9017 L22: 7.4418 REMARK 3 L33: 2.5938 L12: -0.6697 REMARK 3 L13: -0.8371 L23: -0.3977 REMARK 3 S TENSOR REMARK 3 S11: -0.3608 S12: 0.3183 S13: -0.2955 REMARK 3 S21: -0.4570 S22: 0.1795 S23: -0.1632 REMARK 3 S31: 0.3250 S32: 0.5073 S33: 0.1617 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6504 -35.6851 -26.8620 REMARK 3 T TENSOR REMARK 3 T11: 0.6601 T22: 1.2987 REMARK 3 T33: 0.6840 T12: -0.2141 REMARK 3 T13: 0.1796 T23: 0.1233 REMARK 3 L TENSOR REMARK 3 L11: 8.7542 L22: 2.1340 REMARK 3 L33: 7.2835 L12: -3.7294 REMARK 3 L13: 1.6634 L23: -0.4520 REMARK 3 S TENSOR REMARK 3 S11: 0.4928 S12: 0.1124 S13: 0.2841 REMARK 3 S21: -0.8950 S22: 0.2367 S23: -0.4316 REMARK 3 S31: -0.1261 S32: -0.7094 S33: -0.8079 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6715 -36.6219 -29.2397 REMARK 3 T TENSOR REMARK 3 T11: 0.4734 T22: 0.6637 REMARK 3 T33: 0.4496 T12: -0.1936 REMARK 3 T13: 0.1043 T23: 0.2063 REMARK 3 L TENSOR REMARK 3 L11: 3.0996 L22: 8.0303 REMARK 3 L33: 8.2987 L12: -1.1706 REMARK 3 L13: -0.1932 L23: 4.5733 REMARK 3 S TENSOR REMARK 3 S11: -0.0762 S12: 0.4837 S13: 0.4151 REMARK 3 S21: -0.8745 S22: -0.0142 S23: -0.8684 REMARK 3 S31: -0.4988 S32: -0.0719 S33: 0.0914 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2003 -25.0872 -16.7743 REMARK 3 T TENSOR REMARK 3 T11: 0.4130 T22: 0.5617 REMARK 3 T33: 0.4556 T12: -0.2203 REMARK 3 T13: -0.0624 T23: 0.3091 REMARK 3 L TENSOR REMARK 3 L11: 0.8216 L22: 4.2557 REMARK 3 L33: 4.6113 L12: -1.9601 REMARK 3 L13: 0.0834 L23: 2.2617 REMARK 3 S TENSOR REMARK 3 S11: -0.2235 S12: -0.1490 S13: 0.4687 REMARK 3 S21: -0.2056 S22: -0.1035 S23: 0.0184 REMARK 3 S31: -0.6669 S32: 0.5019 S33: 0.1709 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LM4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254653. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11436 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 45.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.94900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.60800 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.60800 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 65.88950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.60800 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.60800 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 65.88950 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.60800 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.60800 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 65.88950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.60800 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.60800 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 65.88950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.60800 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.60800 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 65.88950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.60800 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.60800 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 65.88950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.60800 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.60800 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 65.88950 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.60800 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.60800 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 65.88950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -6 CG CD1 CD2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 ARG A 84 NE CZ NH1 NH2 REMARK 470 ILE A 85 CD1 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 137 CD CE NZ REMARK 470 ILE A 138 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 125 -168.12 -103.74 REMARK 500 LYS A 139 -100.43 56.43 REMARK 500 SER A 140 100.16 -17.80 REMARK 500 LYS A 158 19.48 56.91 REMARK 500 THR A 162 -65.52 61.03 REMARK 500 SER A 194 -7.73 -155.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 204 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 93.0 REMARK 620 3 GLU A 119 OE2 170.3 92.6 REMARK 620 4 ILE A 120 O 83.3 93.0 88.4 REMARK 620 5 Y5V A 203 O13 98.4 100.4 88.4 166.3 REMARK 620 6 Y5V A 203 O15 86.8 175.3 87.0 82.3 84.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 86.5 REMARK 620 3 Y5V A 203 O13 138.6 85.2 REMARK 620 4 Y5V A 203 O10 107.5 164.2 79.4 REMARK 620 5 HOH A 302 O 71.7 85.2 147.3 105.8 REMARK 620 6 HOH A 303 O 144.2 76.2 71.6 95.3 75.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6VL3 RELATED DB: PDB DBREF 7LM4 A 1 196 UNP C3W5S0 C3W5S0_I09A0 1 196 SEQADV 7LM4 MET A -19 UNP C3W5S0 INITIATING METHIONINE SEQADV 7LM4 GLY A -18 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 SER A -17 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 SER A -16 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 HIS A -15 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 HIS A -14 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 HIS A -13 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 HIS A -12 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 HIS A -11 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 HIS A -10 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 SER A -9 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 SER A -8 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 GLY A -7 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 LEU A -6 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 VAL A -5 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 PRO A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 ARG A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 HIS A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 7LM4 THR A 38 UNP C3W5S0 ILE 38 ENGINEERED MUTATION SEQADV 7LM4 A UNP C3W5S0 PHE 51 DELETION SEQADV 7LM4 A UNP C3W5S0 HIS 52 DELETION SEQADV 7LM4 A UNP C3W5S0 PHE 53 DELETION SEQADV 7LM4 A UNP C3W5S0 ILE 54 DELETION SEQADV 7LM4 A UNP C3W5S0 ASP 55 DELETION SEQADV 7LM4 A UNP C3W5S0 GLU 56 DELETION SEQADV 7LM4 A UNP C3W5S0 ARG 57 DELETION SEQADV 7LM4 A UNP C3W5S0 GLY 58 DELETION SEQADV 7LM4 A UNP C3W5S0 GLU 59 DELETION SEQADV 7LM4 A UNP C3W5S0 SER 60 DELETION SEQADV 7LM4 A UNP C3W5S0 ILE 61 DELETION SEQADV 7LM4 A UNP C3W5S0 ILE 62 DELETION SEQADV 7LM4 A UNP C3W5S0 VAL 63 DELETION SEQADV 7LM4 A UNP C3W5S0 GLU 64 DELETION SEQADV 7LM4 A UNP C3W5S0 SER 65 DELETION SEQADV 7LM4 A UNP C3W5S0 GLY 66 DELETION SEQADV 7LM4 A UNP C3W5S0 ASP 67 DELETION SEQADV 7LM4 A UNP C3W5S0 PRO 68 DELETION SEQADV 7LM4 A UNP C3W5S0 ASN 69 DELETION SEQADV 7LM4 GLY A 51 UNP C3W5S0 ALA 70 CONFLICT SEQADV 7LM4 GLY A 52 UNP C3W5S0 LEU 71 CONFLICT SEQADV 7LM4 SER A 53 UNP C3W5S0 LEU 72 CONFLICT SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET Y5V A 203 29 HET QQ4 A 204 41 HET SO4 A 205 5 HET SO4 A 206 5 HET SO4 A 207 5 HETNAM MN MANGANESE (II) ION HETNAM Y5V 5-HYDROXY-N-[2-(4-HYDROXY-3-METHOXYPHENYL)ETHYL]-2-(2- HETNAM 2 Y5V METHYLPHENYL)-6-OXO-1,6-DIHYDROPYRIMIDINE-4- HETNAM 3 Y5V CARBOXAMIDE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 Y5V C21 H21 N3 O5 FORMUL 5 QQ4 C36 H56 N6 O6 FORMUL 6 SO4 3(O4 S 2-) FORMUL 9 HOH *35(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O PHE A 148 N GLY A 121 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.24 LINK OE1 GLU A 80 MN MN A 202 1555 1555 2.23 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.12 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.26 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.08 LINK O ILE A 120 MN MN A 201 1555 1555 2.10 LINK MN MN A 201 O13 Y5V A 203 1555 1555 2.17 LINK MN MN A 201 O15 Y5V A 203 1555 1555 2.00 LINK MN MN A 202 O13 Y5V A 203 1555 1555 2.11 LINK MN MN A 202 O10 Y5V A 203 1555 1555 2.43 LINK MN MN A 202 O HOH A 302 1555 1555 2.25 LINK MN MN A 202 O HOH A 303 1555 1555 2.28 CRYST1 89.216 89.216 131.779 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011209 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011209 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007588 0.00000