data_7LNA # _entry.id 7LNA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.352 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7LNA pdb_00007lna 10.2210/pdb7lna/pdb WWPDB D_1000254649 ? ? EMDB EMD-23459 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Infectious mammalian prion fibril (263K scrapie)' _pdbx_database_related.db_id EMD-23459 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7LNA _pdbx_database_status.recvd_initial_deposition_date 2021-02-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kraus, A.' 1 0000-0001-8477-0894 'Hoyt, F.' 2 0000-0001-9020-6309 'Schwartz, C.L.' 3 0000-0002-0490-6040 'Hansen, B.' 4 0000-0001-7553-4099 'Hughson, A.G.' 5 0000-0002-1693-1315 'Artikis, E.' 6 0000-0001-8643-7403 'Race, B.' 7 0000-0002-5334-1023 'Caughey, B.' 8 0000-0002-3928-6101 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Mol.Cell _citation.journal_id_ASTM MOCEFL _citation.journal_id_CSD 2168 _citation.journal_id_ISSN 1097-2765 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 81 _citation.language ? _citation.page_first 4540 _citation.page_last ? _citation.title 'High-resolution structure and strain comparison of infectious mammalian prions.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.molcel.2021.08.011 _citation.pdbx_database_id_PubMed 34433091 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kraus, A.' 1 ? primary 'Hoyt, F.' 2 ? primary 'Schwartz, C.L.' 3 ? primary 'Hansen, B.' 4 ? primary 'Artikis, E.' 5 ? primary 'Hughson, A.G.' 6 ? primary 'Raymond, G.J.' 7 ? primary 'Race, B.' 8 ? primary 'Baron, G.S.' 9 ? primary 'Caughey, B.' 10 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7LNA _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LNA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Major prion protein' _entity.formula_weight 16264.101 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'Protease-resistant glycosylated, glycophophatidlyinositol-anchored infectious prion amyloid core (inclusive of residues 90-231).' # _entity_name_com.entity_id 1 _entity_name_com.name PrP,PrP27-30,PrP33-35C # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GQGGGTHNQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPMMHFGNDWEDRYYRENMNRYPNQVYYRPVDQY NNQNNFVHDCVNITIKQHTVTTTTKGENFTETDIKIMERVVEQMCTTQYQKESQAYYDGRRS ; _entity_poly.pdbx_seq_one_letter_code_can ;GQGGGTHNQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPMMHFGNDWEDRYYRENMNRYPNQVYYRPVDQY NNQNNFVHDCVNITIKQHTVTTTTKGENFTETDIKIMERVVEQMCTTQYQKESQAYYDGRRS ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 GLY n 1 4 GLY n 1 5 GLY n 1 6 THR n 1 7 HIS n 1 8 ASN n 1 9 GLN n 1 10 TRP n 1 11 ASN n 1 12 LYS n 1 13 PRO n 1 14 SER n 1 15 LYS n 1 16 PRO n 1 17 LYS n 1 18 THR n 1 19 ASN n 1 20 MET n 1 21 LYS n 1 22 HIS n 1 23 MET n 1 24 ALA n 1 25 GLY n 1 26 ALA n 1 27 ALA n 1 28 ALA n 1 29 ALA n 1 30 GLY n 1 31 ALA n 1 32 VAL n 1 33 VAL n 1 34 GLY n 1 35 GLY n 1 36 LEU n 1 37 GLY n 1 38 GLY n 1 39 TYR n 1 40 MET n 1 41 LEU n 1 42 GLY n 1 43 SER n 1 44 ALA n 1 45 MET n 1 46 SER n 1 47 ARG n 1 48 PRO n 1 49 MET n 1 50 MET n 1 51 HIS n 1 52 PHE n 1 53 GLY n 1 54 ASN n 1 55 ASP n 1 56 TRP n 1 57 GLU n 1 58 ASP n 1 59 ARG n 1 60 TYR n 1 61 TYR n 1 62 ARG n 1 63 GLU n 1 64 ASN n 1 65 MET n 1 66 ASN n 1 67 ARG n 1 68 TYR n 1 69 PRO n 1 70 ASN n 1 71 GLN n 1 72 VAL n 1 73 TYR n 1 74 TYR n 1 75 ARG n 1 76 PRO n 1 77 VAL n 1 78 ASP n 1 79 GLN n 1 80 TYR n 1 81 ASN n 1 82 ASN n 1 83 GLN n 1 84 ASN n 1 85 ASN n 1 86 PHE n 1 87 VAL n 1 88 HIS n 1 89 ASP n 1 90 CYS n 1 91 VAL n 1 92 ASN n 1 93 ILE n 1 94 THR n 1 95 ILE n 1 96 LYS n 1 97 GLN n 1 98 HIS n 1 99 THR n 1 100 VAL n 1 101 THR n 1 102 THR n 1 103 THR n 1 104 THR n 1 105 LYS n 1 106 GLY n 1 107 GLU n 1 108 ASN n 1 109 PHE n 1 110 THR n 1 111 GLU n 1 112 THR n 1 113 ASP n 1 114 ILE n 1 115 LYS n 1 116 ILE n 1 117 MET n 1 118 GLU n 1 119 ARG n 1 120 VAL n 1 121 VAL n 1 122 GLU n 1 123 GLN n 1 124 MET n 1 125 CYS n 1 126 THR n 1 127 THR n 1 128 GLN n 1 129 TYR n 1 130 GLN n 1 131 LYS n 1 132 GLU n 1 133 SER n 1 134 GLN n 1 135 ALA n 1 136 TYR n 1 137 TYR n 1 138 ASP n 1 139 GLY n 1 140 ARG n 1 141 ARG n 1 142 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 142 _entity_src_nat.common_name 'Golden hamster' _entity_src_nat.pdbx_organism_scientific 'Mesocricetus auratus' _entity_src_nat.pdbx_ncbi_taxonomy_id 10036 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ brain _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PRIO_MESAU _struct_ref.pdbx_db_accession P04273 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GQGGGTHNQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPMMHFGNDWEDRYYRENMNRYPNQVYYRPVDQY NNQNNFVHDCVNITIKQHTVTTTTKGENFTETDIKIMERVVEQMCTTQYQKESQAYYDGRRS ; _struct_ref.pdbx_align_begin 90 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7LNA A 1 ? 142 ? P04273 90 ? 231 ? 90 231 2 1 7LNA B 1 ? 142 ? P04273 90 ? 231 ? 90 231 3 1 7LNA C 1 ? 142 ? P04273 90 ? 231 ? 90 231 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7LNA _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] 6.31 _refine.aniso_B[1][2] -0.49 _refine.aniso_B[1][3] -0.68 _refine.aniso_B[2][2] 0.56 _refine.aniso_B[2][3] 0.19 _refine.aniso_B[3][3] -6.87 _refine.B_iso_max ? _refine.B_iso_mean 39.924 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.808 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7LNA _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.10 _refine.ls_d_res_low 114.45 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 31660 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.00 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.42912 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.42912 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'PARAMETERS FOR MASK CACLULATION' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.544 _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high . _refine_hist.d_res_low . _refine_hist.number_atoms_solvent ? _refine_hist.number_atoms_total 3171 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein ? _refine_hist.pdbx_number_atoms_nucleic_acid ? _refine_hist.pdbx_number_atoms_ligand ? _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.012 0.012 3249 ? r_bond_refined_d ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_bond_other_d ? ? 'ELECTRON MICROSCOPY' ? 0.952 1.655 4395 ? r_angle_refined_deg ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_angle_other_deg ? ? 'ELECTRON MICROSCOPY' ? 6.356 5.000 384 ? r_dihedral_angle_1_deg ? ? 'ELECTRON MICROSCOPY' ? 37.988 23.333 198 ? r_dihedral_angle_2_deg ? ? 'ELECTRON MICROSCOPY' ? 15.792 15.000 543 ? r_dihedral_angle_3_deg ? ? 'ELECTRON MICROSCOPY' ? 19.307 15.000 18 ? r_dihedral_angle_4_deg ? ? 'ELECTRON MICROSCOPY' ? 0.045 0.200 414 ? r_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.004 0.020 2565 ? r_gen_planes_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_gen_planes_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? 0.000 4.000 1554 ? r_mcbond_it ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_mcbond_other ? ? 'ELECTRON MICROSCOPY' ? 0.000 6.000 1932 ? r_mcangle_it ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_mcangle_other ? ? 'ELECTRON MICROSCOPY' ? 0.000 4.000 1695 ? r_scbond_it ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_scbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_scangle_it ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_scangle_other ? ? 'ELECTRON MICROSCOPY' ? 0.000 70.692 9372 ? r_long_range_B_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_long_range_B_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_rigid_bond_restr ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_free ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_bonded ? ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_B_iso _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_asym_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.pdbx_rms _refine_ls_restr_ncs.pdbx_weight _refine_ls_restr_ncs.pdbx_ens_id 'ELECTRON MICROSCOPY' 1 ? ? 0.00 ? 0.05 1 'interatomic distance' ? A 6122 ? ? 1 'ELECTRON MICROSCOPY' 2 ? ? 0.00 ? 0.05 2 'interatomic distance' ? B 6122 ? ? 1 'ELECTRON MICROSCOPY' 1 ? ? 0.00 ? 0.05 3 'interatomic distance' ? A 6120 ? ? 2 'ELECTRON MICROSCOPY' 2 ? ? 0.00 ? 0.05 4 'interatomic distance' ? C 6120 ? ? 2 'ELECTRON MICROSCOPY' 1 ? ? 0.01 ? 0.05 5 'interatomic distance' ? B 6120 ? ? 3 'ELECTRON MICROSCOPY' 2 ? ? 0.01 ? 0.05 6 'interatomic distance' ? C 6120 ? ? 3 # _refine_ls_shell.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_ls_shell.d_res_high 3.100 _refine_ls_shell.d_res_low 3.181 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 0 _refine_ls_shell.number_reflns_R_work 2326 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.000 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.570 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 1 A 2 2 C 2 1 B 3 2 C 3 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 95 A 227 0 0 ? ? ? ? ? ? ? ? 1 ? 2 B 95 B 227 0 0 ? ? ? ? ? ? ? ? 1 ? 1 A 95 A 227 0 0 ? ? ? ? ? ? ? ? 2 ? 2 C 95 C 227 0 0 ? ? ? ? ? ? ? ? 2 ? 1 B 95 B 227 0 0 ? ? ? ? ? ? ? ? 3 ? 2 C 95 C 227 0 0 ? ? ? ? ? ? ? ? 3 ? # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? 3 ? # _struct.entry_id 7LNA _struct.title 'Infectious mammalian prion fibril (263K scrapie)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7LNA _struct_keywords.text 'infectious mammalian prion, templating, glycosylated glycophophatidlyinositol-anchored amyloid, PIRIBS, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 90 SG ? ? ? 1_555 A CYS 125 SG ? ? A CYS 179 A CYS 214 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? B CYS 90 SG ? ? ? 1_555 B CYS 125 SG ? ? B CYS 179 B CYS 214 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? C CYS 90 SG ? ? ? 1_555 C CYS 125 SG ? ? C CYS 179 C CYS 214 1_555 ? ? ? ? ? ? ? 2.033 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? AA9 ? 3 ? AB1 ? 3 ? AB2 ? 3 ? AB3 ? 3 ? AB4 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB2 1 2 ? parallel AB2 2 3 ? parallel AB3 1 2 ? parallel AB3 2 3 ? parallel AB4 1 2 ? parallel AB4 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS B 7 ? GLN B 9 ? HIS B 96 GLN B 98 AA1 2 HIS A 7 ? GLN A 9 ? HIS A 96 GLN A 98 AA1 3 HIS C 7 ? GLN C 9 ? HIS C 96 GLN C 98 AA2 1 LYS B 17 ? ASN B 19 ? LYS B 106 ASN B 108 AA2 2 LYS A 17 ? ASN A 19 ? LYS A 106 ASN A 108 AA2 3 LYS C 17 ? ASN C 19 ? LYS C 106 ASN C 108 AA3 1 ALA B 26 ? ALA B 29 ? ALA B 115 ALA B 118 AA3 2 ALA A 26 ? ALA A 29 ? ALA A 115 ALA A 118 AA3 3 ALA C 26 ? ALA C 29 ? ALA C 115 ALA C 118 AA4 1 MET B 49 ? HIS B 51 ? MET B 138 HIS B 140 AA4 2 MET A 49 ? HIS A 51 ? MET A 138 HIS A 140 AA4 3 MET C 49 ? HIS C 51 ? MET C 138 HIS C 140 AA5 1 TYR B 61 ? ARG B 62 ? TYR B 150 ARG B 151 AA5 2 TYR A 61 ? ARG A 62 ? TYR A 150 ARG A 151 AA5 3 TYR C 61 ? ARG C 62 ? TYR C 150 ARG C 151 AA6 1 ASN B 70 ? TYR B 74 ? ASN B 159 TYR B 163 AA6 2 ASN A 70 ? TYR A 74 ? ASN A 159 TYR A 163 AA6 3 ASN C 70 ? TYR C 74 ? ASN C 159 TYR C 163 AA7 1 VAL B 77 ? GLN B 79 ? VAL B 166 GLN B 168 AA7 2 VAL A 77 ? GLN A 79 ? VAL A 166 GLN A 168 AA7 3 VAL C 77 ? GLN C 79 ? VAL C 166 GLN C 168 AA8 1 ASN B 82 ? VAL B 87 ? ASN B 171 VAL B 176 AA8 2 ASN A 82 ? VAL A 87 ? ASN A 171 VAL A 176 AA8 3 ASN C 82 ? VAL C 87 ? ASN C 171 VAL C 176 AA9 1 VAL B 91 ? LYS B 96 ? VAL B 180 LYS B 185 AA9 2 VAL A 91 ? LYS A 96 ? VAL A 180 LYS A 185 AA9 3 VAL C 91 ? LYS C 96 ? VAL C 180 LYS C 185 AB1 1 THR B 99 ? THR B 102 ? THR B 188 THR B 191 AB1 2 THR A 99 ? THR A 102 ? THR A 188 THR A 191 AB1 3 THR C 99 ? THR C 102 ? THR C 188 THR C 191 AB2 1 PHE B 109 ? THR B 110 ? PHE B 198 THR B 199 AB2 2 PHE A 109 ? THR A 110 ? PHE A 198 THR A 199 AB2 3 PHE C 109 ? THR C 110 ? PHE C 198 THR C 199 AB3 1 ASP B 113 ? ILE B 116 ? ASP B 202 ILE B 205 AB3 2 ASP A 113 ? ILE A 116 ? ASP A 202 ILE A 205 AB3 3 ASP C 113 ? ILE C 116 ? ASP C 202 ILE C 205 AB4 1 GLN B 134 ? TYR B 136 ? GLN B 223 TYR B 225 AB4 2 GLN A 134 ? TYR A 136 ? GLN A 223 TYR A 225 AB4 3 GLN C 134 ? TYR C 136 ? GLN C 223 TYR C 225 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O HIS B 7 ? O HIS B 96 N ASN A 8 ? N ASN A 97 AA1 2 3 N HIS A 7 ? N HIS A 96 O ASN C 8 ? O ASN C 97 AA2 1 2 O THR B 18 ? O THR B 107 N LYS A 17 ? N LYS A 106 AA2 2 3 N THR A 18 ? N THR A 107 O LYS C 17 ? O LYS C 106 AA3 1 2 O ALA B 26 ? O ALA B 115 N ALA A 27 ? N ALA A 116 AA3 2 3 N ALA A 26 ? N ALA A 115 O ALA C 27 ? O ALA C 116 AA4 1 2 O MET B 50 ? O MET B 139 N MET A 49 ? N MET A 138 AA4 2 3 N MET A 50 ? N MET A 139 O MET C 49 ? O MET C 138 AA5 1 2 O TYR B 61 ? O TYR B 150 N ARG A 62 ? N ARG A 151 AA5 2 3 N TYR A 61 ? N TYR A 150 O ARG C 62 ? O ARG C 151 AA6 1 2 O GLN B 71 ? O GLN B 160 N ASN A 70 ? N ASN A 159 AA6 2 3 N GLN A 71 ? N GLN A 160 O ASN C 70 ? O ASN C 159 AA7 1 2 O VAL B 77 ? O VAL B 166 N ASP A 78 ? N ASP A 167 AA7 2 3 N VAL A 77 ? N VAL A 166 O ASP C 78 ? O ASP C 167 AA8 1 2 O PHE B 86 ? O PHE B 175 N ASN A 85 ? N ASN A 174 AA8 2 3 N PHE A 86 ? N PHE A 175 O ASN C 85 ? O ASN C 174 AA9 1 2 O ILE B 93 ? O ILE B 182 N THR A 94 ? N THR A 183 AA9 2 3 N ILE A 93 ? N ILE A 182 O THR C 94 ? O THR C 183 AB1 1 2 O THR B 99 ? O THR B 188 N VAL A 100 ? N VAL A 189 AB1 2 3 N THR A 99 ? N THR A 188 O VAL C 100 ? O VAL C 189 AB2 1 2 O PHE B 109 ? O PHE B 198 N THR A 110 ? N THR A 199 AB2 2 3 N PHE A 109 ? N PHE A 198 O THR C 110 ? O THR C 199 AB3 1 2 O ASP B 113 ? O ASP B 202 N ILE A 114 ? N ILE A 203 AB3 2 3 N ASP A 113 ? N ASP A 202 O ILE C 114 ? O ILE C 203 AB4 1 2 O GLN B 134 ? O GLN B 223 N ALA A 135 ? N ALA A 224 AB4 2 3 N GLN A 134 ? N GLN A 223 O ALA C 135 ? O ALA C 224 # _atom_sites.entry_id 7LNA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 90 ? ? ? A . n A 1 2 GLN 2 91 ? ? ? A . n A 1 3 GLY 3 92 ? ? ? A . n A 1 4 GLY 4 93 ? ? ? A . n A 1 5 GLY 5 94 ? ? ? A . n A 1 6 THR 6 95 95 THR THR A . n A 1 7 HIS 7 96 96 HIS HIS A . n A 1 8 ASN 8 97 97 ASN ASN A . n A 1 9 GLN 9 98 98 GLN GLN A . n A 1 10 TRP 10 99 99 TRP TRP A . n A 1 11 ASN 11 100 100 ASN ASN A . n A 1 12 LYS 12 101 101 LYS LYS A . n A 1 13 PRO 13 102 102 PRO PRO A . n A 1 14 SER 14 103 103 SER SER A . n A 1 15 LYS 15 104 104 LYS LYS A . n A 1 16 PRO 16 105 105 PRO PRO A . n A 1 17 LYS 17 106 106 LYS LYS A . n A 1 18 THR 18 107 107 THR THR A . n A 1 19 ASN 19 108 108 ASN ASN A . n A 1 20 MET 20 109 109 MET MET A . n A 1 21 LYS 21 110 110 LYS LYS A . n A 1 22 HIS 22 111 111 HIS HIS A . n A 1 23 MET 23 112 112 MET MET A . n A 1 24 ALA 24 113 113 ALA ALA A . n A 1 25 GLY 25 114 114 GLY GLY A . n A 1 26 ALA 26 115 115 ALA ALA A . n A 1 27 ALA 27 116 116 ALA ALA A . n A 1 28 ALA 28 117 117 ALA ALA A . n A 1 29 ALA 29 118 118 ALA ALA A . n A 1 30 GLY 30 119 119 GLY GLY A . n A 1 31 ALA 31 120 120 ALA ALA A . n A 1 32 VAL 32 121 121 VAL VAL A . n A 1 33 VAL 33 122 122 VAL VAL A . n A 1 34 GLY 34 123 123 GLY GLY A . n A 1 35 GLY 35 124 124 GLY GLY A . n A 1 36 LEU 36 125 125 LEU LEU A . n A 1 37 GLY 37 126 126 GLY GLY A . n A 1 38 GLY 38 127 127 GLY GLY A . n A 1 39 TYR 39 128 128 TYR TYR A . n A 1 40 MET 40 129 129 MET MET A . n A 1 41 LEU 41 130 130 LEU LEU A . n A 1 42 GLY 42 131 131 GLY GLY A . n A 1 43 SER 43 132 132 SER SER A . n A 1 44 ALA 44 133 133 ALA ALA A . n A 1 45 MET 45 134 134 MET MET A . n A 1 46 SER 46 135 135 SER SER A . n A 1 47 ARG 47 136 136 ARG ARG A . n A 1 48 PRO 48 137 137 PRO PRO A . n A 1 49 MET 49 138 138 MET MET A . n A 1 50 MET 50 139 139 MET MET A . n A 1 51 HIS 51 140 140 HIS HIS A . n A 1 52 PHE 52 141 141 PHE PHE A . n A 1 53 GLY 53 142 142 GLY GLY A . n A 1 54 ASN 54 143 143 ASN ASN A . n A 1 55 ASP 55 144 144 ASP ASP A . n A 1 56 TRP 56 145 145 TRP TRP A . n A 1 57 GLU 57 146 146 GLU GLU A . n A 1 58 ASP 58 147 147 ASP ASP A . n A 1 59 ARG 59 148 148 ARG ARG A . n A 1 60 TYR 60 149 149 TYR TYR A . n A 1 61 TYR 61 150 150 TYR TYR A . n A 1 62 ARG 62 151 151 ARG ARG A . n A 1 63 GLU 63 152 152 GLU GLU A . n A 1 64 ASN 64 153 153 ASN ASN A . n A 1 65 MET 65 154 154 MET MET A . n A 1 66 ASN 66 155 155 ASN ASN A . n A 1 67 ARG 67 156 156 ARG ARG A . n A 1 68 TYR 68 157 157 TYR TYR A . n A 1 69 PRO 69 158 158 PRO PRO A . n A 1 70 ASN 70 159 159 ASN ASN A . n A 1 71 GLN 71 160 160 GLN GLN A . n A 1 72 VAL 72 161 161 VAL VAL A . n A 1 73 TYR 73 162 162 TYR TYR A . n A 1 74 TYR 74 163 163 TYR TYR A . n A 1 75 ARG 75 164 164 ARG ARG A . n A 1 76 PRO 76 165 165 PRO PRO A . n A 1 77 VAL 77 166 166 VAL VAL A . n A 1 78 ASP 78 167 167 ASP ASP A . n A 1 79 GLN 79 168 168 GLN GLN A . n A 1 80 TYR 80 169 169 TYR TYR A . n A 1 81 ASN 81 170 170 ASN ASN A . n A 1 82 ASN 82 171 171 ASN ASN A . n A 1 83 GLN 83 172 172 GLN GLN A . n A 1 84 ASN 84 173 173 ASN ASN A . n A 1 85 ASN 85 174 174 ASN ASN A . n A 1 86 PHE 86 175 175 PHE PHE A . n A 1 87 VAL 87 176 176 VAL VAL A . n A 1 88 HIS 88 177 177 HIS HIS A . n A 1 89 ASP 89 178 178 ASP ASP A . n A 1 90 CYS 90 179 179 CYS CYS A . n A 1 91 VAL 91 180 180 VAL VAL A . n A 1 92 ASN 92 181 181 ASN ASN A . n A 1 93 ILE 93 182 182 ILE ILE A . n A 1 94 THR 94 183 183 THR THR A . n A 1 95 ILE 95 184 184 ILE ILE A . n A 1 96 LYS 96 185 185 LYS LYS A . n A 1 97 GLN 97 186 186 GLN GLN A . n A 1 98 HIS 98 187 187 HIS HIS A . n A 1 99 THR 99 188 188 THR THR A . n A 1 100 VAL 100 189 189 VAL VAL A . n A 1 101 THR 101 190 190 THR THR A . n A 1 102 THR 102 191 191 THR THR A . n A 1 103 THR 103 192 192 THR THR A . n A 1 104 THR 104 193 193 THR THR A . n A 1 105 LYS 105 194 ? ? ? A . n A 1 106 GLY 106 195 ? ? ? A . n A 1 107 GLU 107 196 ? ? ? A . n A 1 108 ASN 108 197 197 ASN ASN A . n A 1 109 PHE 109 198 198 PHE PHE A . n A 1 110 THR 110 199 199 THR THR A . n A 1 111 GLU 111 200 200 GLU GLU A . n A 1 112 THR 112 201 201 THR THR A . n A 1 113 ASP 113 202 202 ASP ASP A . n A 1 114 ILE 114 203 203 ILE ILE A . n A 1 115 LYS 115 204 204 LYS LYS A . n A 1 116 ILE 116 205 205 ILE ILE A . n A 1 117 MET 117 206 206 MET MET A . n A 1 118 GLU 118 207 207 GLU GLU A . n A 1 119 ARG 119 208 208 ARG ARG A . n A 1 120 VAL 120 209 209 VAL VAL A . n A 1 121 VAL 121 210 210 VAL VAL A . n A 1 122 GLU 122 211 211 GLU GLU A . n A 1 123 GLN 123 212 212 GLN GLN A . n A 1 124 MET 124 213 213 MET MET A . n A 1 125 CYS 125 214 214 CYS CYS A . n A 1 126 THR 126 215 215 THR THR A . n A 1 127 THR 127 216 216 THR THR A . n A 1 128 GLN 128 217 217 GLN GLN A . n A 1 129 TYR 129 218 218 TYR TYR A . n A 1 130 GLN 130 219 219 GLN GLN A . n A 1 131 LYS 131 220 220 LYS LYS A . n A 1 132 GLU 132 221 221 GLU GLU A . n A 1 133 SER 133 222 222 SER SER A . n A 1 134 GLN 134 223 223 GLN GLN A . n A 1 135 ALA 135 224 224 ALA ALA A . n A 1 136 TYR 136 225 225 TYR TYR A . n A 1 137 TYR 137 226 226 TYR TYR A . n A 1 138 ASP 138 227 227 ASP ASP A . n A 1 139 GLY 139 228 ? ? ? A . n A 1 140 ARG 140 229 ? ? ? A . n A 1 141 ARG 141 230 ? ? ? A . n A 1 142 SER 142 231 ? ? ? A . n B 1 1 GLY 1 90 ? ? ? B . n B 1 2 GLN 2 91 ? ? ? B . n B 1 3 GLY 3 92 ? ? ? B . n B 1 4 GLY 4 93 ? ? ? B . n B 1 5 GLY 5 94 ? ? ? B . n B 1 6 THR 6 95 95 THR THR B . n B 1 7 HIS 7 96 96 HIS HIS B . n B 1 8 ASN 8 97 97 ASN ASN B . n B 1 9 GLN 9 98 98 GLN GLN B . n B 1 10 TRP 10 99 99 TRP TRP B . n B 1 11 ASN 11 100 100 ASN ASN B . n B 1 12 LYS 12 101 101 LYS LYS B . n B 1 13 PRO 13 102 102 PRO PRO B . n B 1 14 SER 14 103 103 SER SER B . n B 1 15 LYS 15 104 104 LYS LYS B . n B 1 16 PRO 16 105 105 PRO PRO B . n B 1 17 LYS 17 106 106 LYS LYS B . n B 1 18 THR 18 107 107 THR THR B . n B 1 19 ASN 19 108 108 ASN ASN B . n B 1 20 MET 20 109 109 MET MET B . n B 1 21 LYS 21 110 110 LYS LYS B . n B 1 22 HIS 22 111 111 HIS HIS B . n B 1 23 MET 23 112 112 MET MET B . n B 1 24 ALA 24 113 113 ALA ALA B . n B 1 25 GLY 25 114 114 GLY GLY B . n B 1 26 ALA 26 115 115 ALA ALA B . n B 1 27 ALA 27 116 116 ALA ALA B . n B 1 28 ALA 28 117 117 ALA ALA B . n B 1 29 ALA 29 118 118 ALA ALA B . n B 1 30 GLY 30 119 119 GLY GLY B . n B 1 31 ALA 31 120 120 ALA ALA B . n B 1 32 VAL 32 121 121 VAL VAL B . n B 1 33 VAL 33 122 122 VAL VAL B . n B 1 34 GLY 34 123 123 GLY GLY B . n B 1 35 GLY 35 124 124 GLY GLY B . n B 1 36 LEU 36 125 125 LEU LEU B . n B 1 37 GLY 37 126 126 GLY GLY B . n B 1 38 GLY 38 127 127 GLY GLY B . n B 1 39 TYR 39 128 128 TYR TYR B . n B 1 40 MET 40 129 129 MET MET B . n B 1 41 LEU 41 130 130 LEU LEU B . n B 1 42 GLY 42 131 131 GLY GLY B . n B 1 43 SER 43 132 132 SER SER B . n B 1 44 ALA 44 133 133 ALA ALA B . n B 1 45 MET 45 134 134 MET MET B . n B 1 46 SER 46 135 135 SER SER B . n B 1 47 ARG 47 136 136 ARG ARG B . n B 1 48 PRO 48 137 137 PRO PRO B . n B 1 49 MET 49 138 138 MET MET B . n B 1 50 MET 50 139 139 MET MET B . n B 1 51 HIS 51 140 140 HIS HIS B . n B 1 52 PHE 52 141 141 PHE PHE B . n B 1 53 GLY 53 142 142 GLY GLY B . n B 1 54 ASN 54 143 143 ASN ASN B . n B 1 55 ASP 55 144 144 ASP ASP B . n B 1 56 TRP 56 145 145 TRP TRP B . n B 1 57 GLU 57 146 146 GLU GLU B . n B 1 58 ASP 58 147 147 ASP ASP B . n B 1 59 ARG 59 148 148 ARG ARG B . n B 1 60 TYR 60 149 149 TYR TYR B . n B 1 61 TYR 61 150 150 TYR TYR B . n B 1 62 ARG 62 151 151 ARG ARG B . n B 1 63 GLU 63 152 152 GLU GLU B . n B 1 64 ASN 64 153 153 ASN ASN B . n B 1 65 MET 65 154 154 MET MET B . n B 1 66 ASN 66 155 155 ASN ASN B . n B 1 67 ARG 67 156 156 ARG ARG B . n B 1 68 TYR 68 157 157 TYR TYR B . n B 1 69 PRO 69 158 158 PRO PRO B . n B 1 70 ASN 70 159 159 ASN ASN B . n B 1 71 GLN 71 160 160 GLN GLN B . n B 1 72 VAL 72 161 161 VAL VAL B . n B 1 73 TYR 73 162 162 TYR TYR B . n B 1 74 TYR 74 163 163 TYR TYR B . n B 1 75 ARG 75 164 164 ARG ARG B . n B 1 76 PRO 76 165 165 PRO PRO B . n B 1 77 VAL 77 166 166 VAL VAL B . n B 1 78 ASP 78 167 167 ASP ASP B . n B 1 79 GLN 79 168 168 GLN GLN B . n B 1 80 TYR 80 169 169 TYR TYR B . n B 1 81 ASN 81 170 170 ASN ASN B . n B 1 82 ASN 82 171 171 ASN ASN B . n B 1 83 GLN 83 172 172 GLN GLN B . n B 1 84 ASN 84 173 173 ASN ASN B . n B 1 85 ASN 85 174 174 ASN ASN B . n B 1 86 PHE 86 175 175 PHE PHE B . n B 1 87 VAL 87 176 176 VAL VAL B . n B 1 88 HIS 88 177 177 HIS HIS B . n B 1 89 ASP 89 178 178 ASP ASP B . n B 1 90 CYS 90 179 179 CYS CYS B . n B 1 91 VAL 91 180 180 VAL VAL B . n B 1 92 ASN 92 181 181 ASN ASN B . n B 1 93 ILE 93 182 182 ILE ILE B . n B 1 94 THR 94 183 183 THR THR B . n B 1 95 ILE 95 184 184 ILE ILE B . n B 1 96 LYS 96 185 185 LYS LYS B . n B 1 97 GLN 97 186 186 GLN GLN B . n B 1 98 HIS 98 187 187 HIS HIS B . n B 1 99 THR 99 188 188 THR THR B . n B 1 100 VAL 100 189 189 VAL VAL B . n B 1 101 THR 101 190 190 THR THR B . n B 1 102 THR 102 191 191 THR THR B . n B 1 103 THR 103 192 192 THR THR B . n B 1 104 THR 104 193 193 THR THR B . n B 1 105 LYS 105 194 ? ? ? B . n B 1 106 GLY 106 195 ? ? ? B . n B 1 107 GLU 107 196 ? ? ? B . n B 1 108 ASN 108 197 197 ASN ASN B . n B 1 109 PHE 109 198 198 PHE PHE B . n B 1 110 THR 110 199 199 THR THR B . n B 1 111 GLU 111 200 200 GLU GLU B . n B 1 112 THR 112 201 201 THR THR B . n B 1 113 ASP 113 202 202 ASP ASP B . n B 1 114 ILE 114 203 203 ILE ILE B . n B 1 115 LYS 115 204 204 LYS LYS B . n B 1 116 ILE 116 205 205 ILE ILE B . n B 1 117 MET 117 206 206 MET MET B . n B 1 118 GLU 118 207 207 GLU GLU B . n B 1 119 ARG 119 208 208 ARG ARG B . n B 1 120 VAL 120 209 209 VAL VAL B . n B 1 121 VAL 121 210 210 VAL VAL B . n B 1 122 GLU 122 211 211 GLU GLU B . n B 1 123 GLN 123 212 212 GLN GLN B . n B 1 124 MET 124 213 213 MET MET B . n B 1 125 CYS 125 214 214 CYS CYS B . n B 1 126 THR 126 215 215 THR THR B . n B 1 127 THR 127 216 216 THR THR B . n B 1 128 GLN 128 217 217 GLN GLN B . n B 1 129 TYR 129 218 218 TYR TYR B . n B 1 130 GLN 130 219 219 GLN GLN B . n B 1 131 LYS 131 220 220 LYS LYS B . n B 1 132 GLU 132 221 221 GLU GLU B . n B 1 133 SER 133 222 222 SER SER B . n B 1 134 GLN 134 223 223 GLN GLN B . n B 1 135 ALA 135 224 224 ALA ALA B . n B 1 136 TYR 136 225 225 TYR TYR B . n B 1 137 TYR 137 226 226 TYR TYR B . n B 1 138 ASP 138 227 227 ASP ASP B . n B 1 139 GLY 139 228 ? ? ? B . n B 1 140 ARG 140 229 ? ? ? B . n B 1 141 ARG 141 230 ? ? ? B . n B 1 142 SER 142 231 ? ? ? B . n C 1 1 GLY 1 90 ? ? ? C . n C 1 2 GLN 2 91 ? ? ? C . n C 1 3 GLY 3 92 ? ? ? C . n C 1 4 GLY 4 93 ? ? ? C . n C 1 5 GLY 5 94 ? ? ? C . n C 1 6 THR 6 95 95 THR THR C . n C 1 7 HIS 7 96 96 HIS HIS C . n C 1 8 ASN 8 97 97 ASN ASN C . n C 1 9 GLN 9 98 98 GLN GLN C . n C 1 10 TRP 10 99 99 TRP TRP C . n C 1 11 ASN 11 100 100 ASN ASN C . n C 1 12 LYS 12 101 101 LYS LYS C . n C 1 13 PRO 13 102 102 PRO PRO C . n C 1 14 SER 14 103 103 SER SER C . n C 1 15 LYS 15 104 104 LYS LYS C . n C 1 16 PRO 16 105 105 PRO PRO C . n C 1 17 LYS 17 106 106 LYS LYS C . n C 1 18 THR 18 107 107 THR THR C . n C 1 19 ASN 19 108 108 ASN ASN C . n C 1 20 MET 20 109 109 MET MET C . n C 1 21 LYS 21 110 110 LYS LYS C . n C 1 22 HIS 22 111 111 HIS HIS C . n C 1 23 MET 23 112 112 MET MET C . n C 1 24 ALA 24 113 113 ALA ALA C . n C 1 25 GLY 25 114 114 GLY GLY C . n C 1 26 ALA 26 115 115 ALA ALA C . n C 1 27 ALA 27 116 116 ALA ALA C . n C 1 28 ALA 28 117 117 ALA ALA C . n C 1 29 ALA 29 118 118 ALA ALA C . n C 1 30 GLY 30 119 119 GLY GLY C . n C 1 31 ALA 31 120 120 ALA ALA C . n C 1 32 VAL 32 121 121 VAL VAL C . n C 1 33 VAL 33 122 122 VAL VAL C . n C 1 34 GLY 34 123 123 GLY GLY C . n C 1 35 GLY 35 124 124 GLY GLY C . n C 1 36 LEU 36 125 125 LEU LEU C . n C 1 37 GLY 37 126 126 GLY GLY C . n C 1 38 GLY 38 127 127 GLY GLY C . n C 1 39 TYR 39 128 128 TYR TYR C . n C 1 40 MET 40 129 129 MET MET C . n C 1 41 LEU 41 130 130 LEU LEU C . n C 1 42 GLY 42 131 131 GLY GLY C . n C 1 43 SER 43 132 132 SER SER C . n C 1 44 ALA 44 133 133 ALA ALA C . n C 1 45 MET 45 134 134 MET MET C . n C 1 46 SER 46 135 135 SER SER C . n C 1 47 ARG 47 136 136 ARG ARG C . n C 1 48 PRO 48 137 137 PRO PRO C . n C 1 49 MET 49 138 138 MET MET C . n C 1 50 MET 50 139 139 MET MET C . n C 1 51 HIS 51 140 140 HIS HIS C . n C 1 52 PHE 52 141 141 PHE PHE C . n C 1 53 GLY 53 142 142 GLY GLY C . n C 1 54 ASN 54 143 143 ASN ASN C . n C 1 55 ASP 55 144 144 ASP ASP C . n C 1 56 TRP 56 145 145 TRP TRP C . n C 1 57 GLU 57 146 146 GLU GLU C . n C 1 58 ASP 58 147 147 ASP ASP C . n C 1 59 ARG 59 148 148 ARG ARG C . n C 1 60 TYR 60 149 149 TYR TYR C . n C 1 61 TYR 61 150 150 TYR TYR C . n C 1 62 ARG 62 151 151 ARG ARG C . n C 1 63 GLU 63 152 152 GLU GLU C . n C 1 64 ASN 64 153 153 ASN ASN C . n C 1 65 MET 65 154 154 MET MET C . n C 1 66 ASN 66 155 155 ASN ASN C . n C 1 67 ARG 67 156 156 ARG ARG C . n C 1 68 TYR 68 157 157 TYR TYR C . n C 1 69 PRO 69 158 158 PRO PRO C . n C 1 70 ASN 70 159 159 ASN ASN C . n C 1 71 GLN 71 160 160 GLN GLN C . n C 1 72 VAL 72 161 161 VAL VAL C . n C 1 73 TYR 73 162 162 TYR TYR C . n C 1 74 TYR 74 163 163 TYR TYR C . n C 1 75 ARG 75 164 164 ARG ARG C . n C 1 76 PRO 76 165 165 PRO PRO C . n C 1 77 VAL 77 166 166 VAL VAL C . n C 1 78 ASP 78 167 167 ASP ASP C . n C 1 79 GLN 79 168 168 GLN GLN C . n C 1 80 TYR 80 169 169 TYR TYR C . n C 1 81 ASN 81 170 170 ASN ASN C . n C 1 82 ASN 82 171 171 ASN ASN C . n C 1 83 GLN 83 172 172 GLN GLN C . n C 1 84 ASN 84 173 173 ASN ASN C . n C 1 85 ASN 85 174 174 ASN ASN C . n C 1 86 PHE 86 175 175 PHE PHE C . n C 1 87 VAL 87 176 176 VAL VAL C . n C 1 88 HIS 88 177 177 HIS HIS C . n C 1 89 ASP 89 178 178 ASP ASP C . n C 1 90 CYS 90 179 179 CYS CYS C . n C 1 91 VAL 91 180 180 VAL VAL C . n C 1 92 ASN 92 181 181 ASN ASN C . n C 1 93 ILE 93 182 182 ILE ILE C . n C 1 94 THR 94 183 183 THR THR C . n C 1 95 ILE 95 184 184 ILE ILE C . n C 1 96 LYS 96 185 185 LYS LYS C . n C 1 97 GLN 97 186 186 GLN GLN C . n C 1 98 HIS 98 187 187 HIS HIS C . n C 1 99 THR 99 188 188 THR THR C . n C 1 100 VAL 100 189 189 VAL VAL C . n C 1 101 THR 101 190 190 THR THR C . n C 1 102 THR 102 191 191 THR THR C . n C 1 103 THR 103 192 192 THR THR C . n C 1 104 THR 104 193 193 THR THR C . n C 1 105 LYS 105 194 ? ? ? C . n C 1 106 GLY 106 195 ? ? ? C . n C 1 107 GLU 107 196 ? ? ? C . n C 1 108 ASN 108 197 197 ASN ASN C . n C 1 109 PHE 109 198 198 PHE PHE C . n C 1 110 THR 110 199 199 THR THR C . n C 1 111 GLU 111 200 200 GLU GLU C . n C 1 112 THR 112 201 201 THR THR C . n C 1 113 ASP 113 202 202 ASP ASP C . n C 1 114 ILE 114 203 203 ILE ILE C . n C 1 115 LYS 115 204 204 LYS LYS C . n C 1 116 ILE 116 205 205 ILE ILE C . n C 1 117 MET 117 206 206 MET MET C . n C 1 118 GLU 118 207 207 GLU GLU C . n C 1 119 ARG 119 208 208 ARG ARG C . n C 1 120 VAL 120 209 209 VAL VAL C . n C 1 121 VAL 121 210 210 VAL VAL C . n C 1 122 GLU 122 211 211 GLU GLU C . n C 1 123 GLN 123 212 212 GLN GLN C . n C 1 124 MET 124 213 213 MET MET C . n C 1 125 CYS 125 214 214 CYS CYS C . n C 1 126 THR 126 215 215 THR THR C . n C 1 127 THR 127 216 216 THR THR C . n C 1 128 GLN 128 217 217 GLN GLN C . n C 1 129 TYR 129 218 218 TYR TYR C . n C 1 130 GLN 130 219 219 GLN GLN C . n C 1 131 LYS 131 220 220 LYS LYS C . n C 1 132 GLU 132 221 221 GLU GLU C . n C 1 133 SER 133 222 222 SER SER C . n C 1 134 GLN 134 223 223 GLN GLN C . n C 1 135 ALA 135 224 224 ALA ALA C . n C 1 136 TYR 136 225 225 TYR TYR C . n C 1 137 TYR 137 226 226 TYR TYR C . n C 1 138 ASP 138 227 227 ASP ASP C . n C 1 139 GLY 139 228 ? ? ? C . n C 1 140 ARG 140 229 ? ? ? C . n C 1 141 ARG 141 230 ? ? ? C . n C 1 142 SER 142 231 ? ? ? C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-09-01 2 'Structure model' 1 1 2021-09-08 3 'Structure model' 1 2 2021-11-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 3 'Structure model' '_citation.journal_volume' 4 3 'Structure model' '_citation.page_first' # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name REFMAC _software.os ? _software.os_version ? _software.type ? _software.version 5.8.0258 _software.pdbx_ordinal 1 # _em_3d_fitting.entry_id 7LNA _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'AB INITIO MODEL' _em_3d_fitting.ref_space RECIPROCAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7LNA _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ;Auto-refinement was then performed while optimizing the helical twist and rise. Auto-refinement with refinement of twist and rise yielded a final map with a twist of -0.847 degree and rise of 4.874 angstrom. Iterative cycles of CTF refinement, Bayesian polishing, and auto refinement were used until resolution estimates stabilized. Post processing in RELION was performed with a soft-edged mask representing 10% of the central Z length of the fibril. Sharpening was applied with a B-factor of -31 square angstrom. ; _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 15884 _em_3d_reconstruction.resolution 3.14 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Purified from brains of hamsters with clinical scrapie prion disease.' _em_entity_assembly.name 'infectious mammalian prion fibril (263K scrapie)' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7LNA _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'Solarus 950 (Gatan, Pleasanton CA)' _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type C-flat-1.2/1.3 _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 295 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 90 _em_vitrification.instrument 'LEICA EM GP' _em_vitrification.entry_id 7LNA _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7LNA _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7LNA _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 147 ? ? -98.37 -64.09 2 1 ASP B 147 ? ? -98.63 -64.40 3 1 ASP C 147 ? ? -98.28 -63.66 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 90 ? A GLY 1 2 1 Y 1 A GLN 91 ? A GLN 2 3 1 Y 1 A GLY 92 ? A GLY 3 4 1 Y 1 A GLY 93 ? A GLY 4 5 1 Y 1 A GLY 94 ? A GLY 5 6 1 Y 1 A LYS 194 ? A LYS 105 7 1 Y 1 A GLY 195 ? A GLY 106 8 1 Y 1 A GLU 196 ? A GLU 107 9 1 Y 1 A GLY 228 ? A GLY 139 10 1 Y 1 A ARG 229 ? A ARG 140 11 1 Y 1 A ARG 230 ? A ARG 141 12 1 Y 1 A SER 231 ? A SER 142 13 1 Y 1 B GLY 90 ? B GLY 1 14 1 Y 1 B GLN 91 ? B GLN 2 15 1 Y 1 B GLY 92 ? B GLY 3 16 1 Y 1 B GLY 93 ? B GLY 4 17 1 Y 1 B GLY 94 ? B GLY 5 18 1 Y 1 B LYS 194 ? B LYS 105 19 1 Y 1 B GLY 195 ? B GLY 106 20 1 Y 1 B GLU 196 ? B GLU 107 21 1 Y 1 B GLY 228 ? B GLY 139 22 1 Y 1 B ARG 229 ? B ARG 140 23 1 Y 1 B ARG 230 ? B ARG 141 24 1 Y 1 B SER 231 ? B SER 142 25 1 Y 1 C GLY 90 ? C GLY 1 26 1 Y 1 C GLN 91 ? C GLN 2 27 1 Y 1 C GLY 92 ? C GLY 3 28 1 Y 1 C GLY 93 ? C GLY 4 29 1 Y 1 C GLY 94 ? C GLY 5 30 1 Y 1 C LYS 194 ? C LYS 105 31 1 Y 1 C GLY 195 ? C GLY 106 32 1 Y 1 C GLU 196 ? C GLU 107 33 1 Y 1 C GLY 228 ? C GLY 139 34 1 Y 1 C ARG 229 ? C ARG 140 35 1 Y 1 C ARG 230 ? C ARG 141 36 1 Y 1 C SER 231 ? C SER 142 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 10036 _em_entity_assembly_naturalsource.organ brain _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Mesocricetus auratus' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue brain # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details 'Processing and reconstruction was conducted in Relion as per Scheres, Acta Cryst. (2020). D76, 94-101' # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ;Filament start and end positions were picked manually in RELION. Particles were extracted with an interbox distance of 14.7A along the filament axis. ; _em_particle_selection.method ? _em_particle_selection.num_particles_selected 337368 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? RELION 3.1 1 ? ? 2 'IMAGE ACQUISITION' ? SerialEM ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4.1 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot 0.9.2pre ? 1 ? 8 'MODEL FITTING' ? PHENIX 1.19 ? 1 ? 9 OTHER ? ? ? ? ? ? 10 'MODEL REFINEMENT' ? PHENIX 1.19 ? 1 ? 11 'MODEL REFINEMENT' ? REFMAC 5 ? 1 ? 12 'INITIAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 13 'FINAL EULER ASSIGNMENT' ? RELION 3.1 1 ? ? 14 CLASSIFICATION ? RELION 3.1 1 ? ? 15 RECONSTRUCTION ;RELION was used for 2D and 3D classification of particles, refinement, Bayesian polishing and post-processing with a soft-edged mask. ; RELION 3.1 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' 'United States' AI000580 1 'Other private' 'United States' ? 2 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support microscopy _pdbx_struct_assembly_auth_evidence.details ? #