data_7LNG # _entry.id 7LNG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7LNG pdb_00007lng 10.2210/pdb7lng/pdb WWPDB D_1000254669 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7LNG _pdbx_database_status.recvd_initial_deposition_date 2021-02-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fang, Z.' 1 0000-0001-8679-6633 'Giurgiu, C.' 2 0000-0003-0145-0110 'Szostak, J.W.' 3 0000-0003-4131-1203 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 60 _citation.language ? _citation.page_first 22925 _citation.page_last 22932 _citation.title 'Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202109714 _citation.pdbx_database_id_PubMed 34428345 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Giurgiu, C.' 1 ? primary 'Fang, Z.' 2 ? primary 'Aitken, H.R.M.' 3 ? primary 'Kim, S.C.' 4 ? primary 'Pazienza, L.' 5 ? primary 'Mittal, S.' 6 ? primary 'Szostak, J.W.' 7 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7LNG _cell.details ? _cell.formula_units_Z ? _cell.length_a 45.165 _cell.length_a_esd ? _cell.length_b 45.165 _cell.length_b_esd ? _cell.length_c 82.831 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LNG _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(TG))-3') ; 4422.683 2 ? ? ? ? 2 non-polymer syn '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' 349.234 4 ? ? ? ? 3 non-polymer syn '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' 375.231 2 ? ? ? ? 4 non-polymer syn '2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one' 332.187 2 ? ? ? ? 5 non-polymer syn '4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE' 269.254 2 ? ? ? ? 6 non-polymer syn "DIGUANOSINE-5'-TRIPHOSPHATE" 788.406 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code CCCGACUUAAGUCG _entity_poly.pdbx_seq_one_letter_code_can CCCGACUUAAGUCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 C n 1 3 C n 1 4 G n 1 5 A n 1 6 C n 1 7 U n 1 8 U n 1 9 A n 1 10 A n 1 11 G n 1 12 U n 1 13 C n 1 14 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7LNG _struct_ref.pdbx_db_accession 7LNG _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7LNG A 1 ? 14 ? 7LNG 1 ? 14 ? 1 14 2 1 7LNG B 1 ? 14 ? 7LNG 1 ? 14 ? 1 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GP3 non-polymer . "DIGUANOSINE-5'-TRIPHOSPHATE" ? 'C20 H27 N10 O18 P3' 788.406 LCC 'RNA linking' . '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H16 N3 O8 P' 349.234 LCG 'RNA linking' n '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H14 N5 O8 P' 375.231 LKC 'RNA linking' . '4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE' ? 'C11 H15 N3 O5' 269.254 TG 'RNA linking' n '2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one' ? 'C9 H11 N5 O7 P' 332.187 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7LNG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M HEPES sodium pH 7.5, 1.5 M Lithium sulfate monohydrate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2021-02-05 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.033175 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.033175 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 57.59 _reflns.entry_id 7LNG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 82.83 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5325 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.68 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.9 _reflns.pdbx_Rmerge_I_obs 0.103 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.111 _reflns.pdbx_Rpim_I_all 0.040 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.20 _reflns_shell.d_res_low 2.24 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.3 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 266 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.295 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.312 _reflns_shell.pdbx_Rpim_I_all 0.101 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.955 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.556 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] -0.556 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] 1.112 _refine.B_iso_max ? _refine.B_iso_mean 55.478 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.945 _refine.correlation_coeff_Fo_to_Fc_free 0.907 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7LNG _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.200 _refine.ls_d_res_low 82.83 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5324 _refine.ls_number_reflns_R_free 290 _refine.ls_number_reflns_R_work 5034 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.663 _refine.ls_percent_reflns_R_free 5.447 _refine.ls_R_factor_all 0.228 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2747 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2250 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5UEE _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.059 _refine.pdbx_overall_ESU_R_Free 0.048 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 4.994 _refine.overall_SU_ML 0.140 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 82.83 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 696 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 378 _refine_hist.pdbx_number_atoms_ligand 318 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.017 0.018 780 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.025 0.025 343 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.663 2.131 1190 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 4.041 3.213 811 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.194 0.200 140 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 1.885 0.200 22 ? r_chiral_restr_other ? ? 'X-RAY DIFFRACTION' ? 0.010 0.021 400 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.023 148 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.133 0.200 132 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.229 0.200 483 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.249 0.200 314 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.228 0.200 171 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.117 0.200 17 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.028 0.200 4 ? r_symmetry_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.178 0.200 20 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.211 0.200 38 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.374 0.200 3 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 5.028 5.818 779 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 5.025 5.821 780 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 6.744 8.710 1190 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 6.742 8.713 1191 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 8.328 57.777 1099 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 8.324 57.776 1100 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.200 2.257 . . 17 367 99.7403 . . . 0.425 . 0.214 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.257 2.319 . . 25 349 100.0000 . . . 0.264 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.319 2.386 . . 11 349 100.0000 . . . 0.307 . 0.301 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.386 2.459 . . 20 329 100.0000 . . . 0.296 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.459 2.540 . . 15 334 100.0000 . . . 0.326 . 0.322 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.540 2.629 . . 20 308 99.6960 . . . 0.478 . 0.286 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.629 2.728 . . 17 304 100.0000 . . . 0.434 . 0.266 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.728 2.839 . . 17 298 100.0000 . . . 0.453 . 0.313 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.839 2.966 . . 12 293 100.0000 . . . 0.455 . 0.272 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.966 3.110 . . 8 268 100.0000 . . . 0.369 . 0.240 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.110 3.278 . . 18 265 100.0000 . . . 0.288 . 0.258 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.278 3.477 . . 18 243 100.0000 . . . 0.309 . 0.210 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.477 3.716 . . 10 244 100.0000 . . . 0.189 . . . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.716 4.013 . . 16 205 99.5496 . . . 0.303 . 0.175 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.013 4.395 . . 13 208 100.0000 . . . 0.183 . 0.173 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.395 4.912 . . 10 182 100.0000 . . . 0.163 . 0.158 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.912 5.669 . . 19 166 100.0000 . . . 0.195 . 0.182 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.669 6.935 . . 11 137 100.0000 . . . 0.262 . 0.216 . . . . . . . . . . . 'X-RAY DIFFRACTION' 6.935 9.773 . . 7 120 99.2188 . . . 0.260 . 0.237 . . . . . . . . . . . 'X-RAY DIFFRACTION' 9.773 82.83 . . 6 65 83.5294 . . . 0.315 . 0.256 . . . . . . . . . . . # _struct.entry_id 7LNG _struct.title ;TNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7LNG _struct_keywords.text 'RNA, nonenzymatic RNA extension' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 2 ? H N N 2 ? I N N 6 ? J N N 5 ? K N N 2 ? L N N 6 ? M N N 3 ? N N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 5 P ? ? ? 1_555 D LCG . "O3'" ? ? A A 5 A LCG 102 1_555 ? ? ? ? ? ? ? 1.646 ? ? covale2 covale both ? A C 13 "O3'" ? ? ? 1_555 E TG . P ? ? A C 13 A TG 103 1_555 ? ? ? ? ? ? ? 1.634 ? ? covale3 covale both ? C LCC . "O3'" ? ? ? 1_555 D LCG . P ? ? A LCC 101 A LCG 102 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale4 covale both ? C LCC . P ? ? ? 1_555 K LCC . "O3'" ? ? A LCC 101 B LCC 102 1_555 ? ? ? ? ? ? ? 1.643 ? ? covale5 covale both ? F LKC . "O3'" ? ? ? 1_555 G LCC . P ? ? A LKC 104 A LCC 105 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale6 covale both ? G LCC . "O3'" ? ? ? 1_555 H LCC . P ? ? A LCC 105 A LCC 106 1_555 ? ? ? ? ? ? ? 1.650 ? ? covale7 covale both ? H LCC . "O3'" ? ? ? 1_555 M LCG . P ? ? A LCC 106 B LCG 104 1_555 ? ? ? ? ? ? ? 1.684 ? ? covale8 covale both ? B A 5 P ? ? ? 1_555 M LCG . "O3'" ? ? B A 5 B LCG 104 1_555 ? ? ? ? ? ? ? 1.620 ? ? covale9 covale both ? B C 13 "O3'" ? ? ? 1_555 N TG . P ? ? B C 13 B TG 105 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale10 covale both ? J LKC . "O3'" ? ? ? 1_555 K LCC . P ? ? B LKC 101 B LCC 102 1_555 ? ? ? ? ? ? ? 1.640 ? ? hydrog1 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 6 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 7 B A 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 9 N1 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 9 N6 ? ? A U 8 B A 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 9 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 9 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 9 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 7 N3 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 7 O4 ? ? A A 10 B U 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 6 N3 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 6 O2 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 6 N4 ? ? A G 11 B C 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 7LNG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.022141 _atom_sites.fract_transf_matrix[1][2] 0.012783 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025566 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012073 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 P 15 15 6.435 1.907 4.179 27.157 1.780 0.526 1.491 68.164 1.273 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 ? ? ? A . n A 1 2 C 2 2 ? ? ? A . n A 1 3 C 3 3 ? ? ? A . n A 1 4 G 4 4 ? ? ? A . n A 1 5 A 5 5 5 A A A . n A 1 6 C 6 6 6 C C A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 G 14 14 ? ? ? A . n B 1 1 C 1 1 ? ? ? B . n B 1 2 C 2 2 ? ? ? B . n B 1 3 C 3 3 ? ? ? B . n B 1 4 G 4 4 ? ? ? B . n B 1 5 A 5 5 5 A A B . n B 1 6 C 6 6 6 C C B . n B 1 7 U 7 7 7 U U B . n B 1 8 U 8 8 8 U U B . n B 1 9 A 9 9 9 A A B . n B 1 10 A 10 10 10 A A B . n B 1 11 G 11 11 11 G G B . n B 1 12 U 12 12 12 U U B . n B 1 13 C 13 13 13 C C B . n B 1 14 G 14 14 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LCC 1 101 3 LCC LCC A . D 3 LCG 1 102 4 LCG LCG A . E 4 TG 1 103 14 TG TG A . F 5 LKC 1 104 1 LKC LCC A . G 2 LCC 1 105 2 LCC LCC A . H 2 LCC 1 106 3 LCC LCC A . I 6 GP3 1 107 101 GP3 GP3 A . J 5 LKC 1 101 1 LKC LCC B . K 2 LCC 1 102 2 LCC LCC B . L 6 GP3 1 103 101 GP3 GP3 B . M 3 LCG 1 104 4 LCG LCG B . N 4 TG 1 105 14 TG TG B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2870 ? 1 MORE 6 ? 1 'SSA (A^2)' 5230 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-09-08 2 'Structure model' 1 1 2021-10-20 3 'Structure model' 1 2 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _pdbx_entry_details.entry_id 7LNG _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O3'" A LKC 104 ? ? O2P A LCC 105 ? ? 1.89 2 1 "O3'" A LCC 105 ? ? O2P A LCC 106 ? ? 1.98 3 1 "O3'" A C 13 ? ? O1P A TG 103 ? ? 2.16 4 1 "O3'" B LKC 101 ? ? O1P B LCC 102 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 B A 5 ? ? P B A 5 ? ? OP2 B A 5 ? ? 102.19 119.60 -17.41 1.50 N 2 1 "O5'" B A 5 ? ? P B A 5 ? ? OP1 B A 5 ? ? 98.22 105.70 -7.48 0.90 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A C 1 ? A C 1 2 1 Y 1 A C 2 ? A C 2 3 1 Y 1 A C 3 ? A C 3 4 1 Y 1 A G 4 ? A G 4 5 1 Y 1 A G 14 ? A G 14 6 1 Y 1 B C 1 ? B C 1 7 1 Y 1 B C 2 ? B C 2 8 1 Y 1 B C 3 ? B C 3 9 1 Y 1 B G 4 ? B G 4 10 1 Y 1 B G 14 ? B G 14 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GP3 N9A N Y N 111 GP3 C8A C Y N 112 GP3 N7A N Y N 113 GP3 C5A C Y N 114 GP3 C6A C N N 115 GP3 O6A O N N 116 GP3 N1A N N N 117 GP3 C2A C N N 118 GP3 N2A N N N 119 GP3 N3A N N N 120 GP3 C4A C Y N 121 GP3 O5D O N N 122 GP3 C5D C N N 123 GP3 C4D C N R 124 GP3 O4D O N N 125 GP3 C3D C N S 126 GP3 O3D O N N 127 GP3 C2D C N R 128 GP3 O2D O N N 129 GP3 C1D C N R 130 GP3 PA P N R 131 GP3 O1A O N N 132 GP3 O2A O N N 133 GP3 O3A O N N 134 GP3 PB P N N 135 GP3 O1B O N N 136 GP3 O2B O N N 137 GP3 O3B O N N 138 GP3 PG P N R 139 GP3 O1G O N N 140 GP3 O2G O N N 141 GP3 O5E O N N 142 GP3 C5E C N N 143 GP3 C4E C N R 144 GP3 O4E O N N 145 GP3 C3E C N S 146 GP3 O3E O N N 147 GP3 C2E C N R 148 GP3 O2E O N N 149 GP3 C1E C N R 150 GP3 N9B N Y N 151 GP3 C8B C Y N 152 GP3 N7B N Y N 153 GP3 C5B C Y N 154 GP3 C6B C N N 155 GP3 O6B O N N 156 GP3 N1B N N N 157 GP3 C2B C N N 158 GP3 N2B N N N 159 GP3 N3B N N N 160 GP3 C4B C Y N 161 GP3 H8A H N N 162 GP3 H1A H N N 163 GP3 H21A H N N 164 GP3 H22A H N N 165 GP3 H51A H N N 166 GP3 H52A H N N 167 GP3 H4D H N N 168 GP3 H3D H N N 169 GP3 HO3A H N N 170 GP3 H2D H N N 171 GP3 HO2A H N N 172 GP3 H1D H N N 173 GP3 HOA2 H N N 174 GP3 HOB2 H N N 175 GP3 HOG2 H N N 176 GP3 H51B H N N 177 GP3 H52B H N N 178 GP3 H4E H N N 179 GP3 H3E H N N 180 GP3 HO3B H N N 181 GP3 H2E H N N 182 GP3 HO2B H N N 183 GP3 H1E H N N 184 GP3 H8B H N N 185 GP3 H1B H N N 186 GP3 H21B H N N 187 GP3 H22B H N N 188 LCC "O5'" O N N 189 LCC "C5'" C N N 190 LCC "C4'" C N R 191 LCC "O4'" O N N 192 LCC "C1'" C N R 193 LCC N1 N N N 194 LCC C6 C N N 195 LCC C5 C N N 196 LCC C5M C N N 197 LCC C4 C N N 198 LCC N4 N N N 199 LCC N3 N N N 200 LCC C2 C N N 201 LCC O2 O N N 202 LCC "C3'" C N S 203 LCC "C2'" C N R 204 LCC "O2'" O N N 205 LCC "O3'" O N N 206 LCC "C6'" C N N 207 LCC P P N N 208 LCC O1P O N N 209 LCC O2P O N N 210 LCC OXT O N N 211 LCC "H5'1" H N N 212 LCC "H5'2" H N N 213 LCC "H1'" H N N 214 LCC H6 H N N 215 LCC H5M1 H N N 216 LCC H5M2 H N N 217 LCC H5M3 H N N 218 LCC H41 H N N 219 LCC H42 H N N 220 LCC "H3'" H N N 221 LCC "H2'1" H N N 222 LCC H3T H N N 223 LCC "H6'1" H N N 224 LCC "H6'2" H N N 225 LCC H1P H N N 226 LCC HXT H N N 227 LCG P P N N 228 LCG OP1 O N N 229 LCG "O5'" O N N 230 LCG "C5'" C N N 231 LCG "C3'" C N S 232 LCG "C6'" C N N 233 LCG N9 N Y N 234 LCG C8 C Y N 235 LCG C4 C Y N 236 LCG N7 N Y N 237 LCG C5 C Y N 238 LCG C6 C N N 239 LCG "C2'" C N R 240 LCG O6 O N N 241 LCG "C4'" C N R 242 LCG "C1'" C N R 243 LCG C2 C N N 244 LCG N1 N N N 245 LCG "O4'" O N N 246 LCG OP2 O N N 247 LCG N2 N N N 248 LCG N3 N N N 249 LCG "O2'" O N N 250 LCG "O3'" O N N 251 LCG OP3 O N N 252 LCG "H5'" H N N 253 LCG "H5''" H N N 254 LCG "H3'" H N N 255 LCG "H6'1" H N N 256 LCG "H6'2" H N N 257 LCG H8 H N N 258 LCG "H2'" H N N 259 LCG "H1'" H N N 260 LCG H1 H N N 261 LCG HOP2 H N N 262 LCG H21 H N N 263 LCG H22 H N N 264 LCG "HO3'" H N N 265 LCG HOP3 H N N 266 LKC N1 N N N 267 LKC C2 C N N 268 LKC N3 N N N 269 LKC C4 C N N 270 LKC C5 C N N 271 LKC C6 C N N 272 LKC O2 O N N 273 LKC N4 N N N 274 LKC "C1'" C N R 275 LKC "C2'" C N R 276 LKC "C3'" C N S 277 LKC "C4'" C N S 278 LKC "O4'" O N N 279 LKC "O3'" O N N 280 LKC "C5'" C N N 281 LKC "O5'" O N N 282 LKC C5A C N N 283 LKC "O2'" O N N 284 LKC "C6'" C N N 285 LKC H6 H N N 286 LKC H41 H N N 287 LKC H42 H N N 288 LKC "H1'" H N N 289 LKC "H2'1" H N N 290 LKC "H3'" H N N 291 LKC H3T H N N 292 LKC "H5'1" H N N 293 LKC "H5'2" H N N 294 LKC H5T H N N 295 LKC H5M1 H N N 296 LKC H5M2 H N N 297 LKC H5M3 H N N 298 LKC "H6'1" H N N 299 LKC "H6'2" H N N 300 TG "C1'" C N R 301 TG C2 C N N 302 TG "C2'" C N R 303 TG "C3'" C N S 304 TG C4 C Y N 305 TG "C4'" C N N 306 TG C5 C Y N 307 TG C6 C N N 308 TG C8 C Y N 309 TG N1 N N N 310 TG N2 N N N 311 TG N3 N N N 312 TG N7 N Y N 313 TG N9 N Y N 314 TG O1P O N N 315 TG "O2'" O N N 316 TG O2P O N N 317 TG "O3'" O N N 318 TG "O4'" O N N 319 TG O6 O N N 320 TG P P N N 321 TG H1 H N N 322 TG H2 H N N 323 TG H3 H N N 324 TG H4 H N N 325 TG H5 H N N 326 TG H6 H N N 327 TG H7 H N N 328 TG H8 H N N 329 TG H9 H N N 330 TG H11 H N N 331 TG O3P O N N 332 TG H10 H N N 333 U OP3 O N N 334 U P P N N 335 U OP1 O N N 336 U OP2 O N N 337 U "O5'" O N N 338 U "C5'" C N N 339 U "C4'" C N R 340 U "O4'" O N N 341 U "C3'" C N S 342 U "O3'" O N N 343 U "C2'" C N R 344 U "O2'" O N N 345 U "C1'" C N R 346 U N1 N N N 347 U C2 C N N 348 U O2 O N N 349 U N3 N N N 350 U C4 C N N 351 U O4 O N N 352 U C5 C N N 353 U C6 C N N 354 U HOP3 H N N 355 U HOP2 H N N 356 U "H5'" H N N 357 U "H5''" H N N 358 U "H4'" H N N 359 U "H3'" H N N 360 U "HO3'" H N N 361 U "H2'" H N N 362 U "HO2'" H N N 363 U "H1'" H N N 364 U H3 H N N 365 U H5 H N N 366 U H6 H N N 367 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GP3 N9A C8A sing Y N 116 GP3 N9A C4A sing Y N 117 GP3 N9A C1D sing N N 118 GP3 C8A N7A doub Y N 119 GP3 C8A H8A sing N N 120 GP3 N7A C5A sing Y N 121 GP3 C5A C6A sing N N 122 GP3 C5A C4A doub Y N 123 GP3 C6A O6A doub N N 124 GP3 C6A N1A sing N N 125 GP3 N1A C2A sing N N 126 GP3 N1A H1A sing N N 127 GP3 C2A N2A sing N N 128 GP3 C2A N3A doub N N 129 GP3 N2A H21A sing N N 130 GP3 N2A H22A sing N N 131 GP3 N3A C4A sing N N 132 GP3 O5D C5D sing N N 133 GP3 O5D PA sing N N 134 GP3 C5D C4D sing N N 135 GP3 C5D H51A sing N N 136 GP3 C5D H52A sing N N 137 GP3 C4D O4D sing N N 138 GP3 C4D C3D sing N N 139 GP3 C4D H4D sing N N 140 GP3 O4D C1D sing N N 141 GP3 C3D O3D sing N N 142 GP3 C3D C2D sing N N 143 GP3 C3D H3D sing N N 144 GP3 O3D HO3A sing N N 145 GP3 C2D O2D sing N N 146 GP3 C2D C1D sing N N 147 GP3 C2D H2D sing N N 148 GP3 O2D HO2A sing N N 149 GP3 C1D H1D sing N N 150 GP3 PA O1A doub N N 151 GP3 PA O2A sing N N 152 GP3 PA O3A sing N N 153 GP3 O2A HOA2 sing N N 154 GP3 O3A PB sing N N 155 GP3 PB O1B doub N N 156 GP3 PB O2B sing N N 157 GP3 PB O3B sing N N 158 GP3 O2B HOB2 sing N N 159 GP3 O3B PG sing N N 160 GP3 PG O1G doub N N 161 GP3 PG O2G sing N N 162 GP3 PG O5E sing N N 163 GP3 O2G HOG2 sing N N 164 GP3 O5E C5E sing N N 165 GP3 C5E C4E sing N N 166 GP3 C5E H51B sing N N 167 GP3 C5E H52B sing N N 168 GP3 C4E O4E sing N N 169 GP3 C4E C3E sing N N 170 GP3 C4E H4E sing N N 171 GP3 O4E C1E sing N N 172 GP3 C3E O3E sing N N 173 GP3 C3E C2E sing N N 174 GP3 C3E H3E sing N N 175 GP3 O3E HO3B sing N N 176 GP3 C2E O2E sing N N 177 GP3 C2E C1E sing N N 178 GP3 C2E H2E sing N N 179 GP3 O2E HO2B sing N N 180 GP3 C1E N9B sing N N 181 GP3 C1E H1E sing N N 182 GP3 N9B C8B sing Y N 183 GP3 N9B C4B sing Y N 184 GP3 C8B N7B doub Y N 185 GP3 C8B H8B sing N N 186 GP3 N7B C5B sing Y N 187 GP3 C5B C6B sing N N 188 GP3 C5B C4B doub Y N 189 GP3 C6B O6B doub N N 190 GP3 C6B N1B sing N N 191 GP3 N1B C2B sing N N 192 GP3 N1B H1B sing N N 193 GP3 C2B N2B sing N N 194 GP3 C2B N3B doub N N 195 GP3 N2B H21B sing N N 196 GP3 N2B H22B sing N N 197 GP3 N3B C4B sing N N 198 LCC "O5'" "C5'" sing N N 199 LCC "O5'" P sing N N 200 LCC "C5'" "C4'" sing N N 201 LCC "C5'" "H5'1" sing N N 202 LCC "C5'" "H5'2" sing N N 203 LCC "C4'" "O4'" sing N N 204 LCC "C4'" "C3'" sing N N 205 LCC "C4'" "C6'" sing N N 206 LCC "O4'" "C1'" sing N N 207 LCC "C1'" N1 sing N N 208 LCC "C1'" "C2'" sing N N 209 LCC "C1'" "H1'" sing N N 210 LCC N1 C6 sing N N 211 LCC N1 C2 sing N N 212 LCC C6 C5 doub N N 213 LCC C6 H6 sing N N 214 LCC C5 C5M sing N N 215 LCC C5 C4 sing N N 216 LCC C5M H5M1 sing N N 217 LCC C5M H5M2 sing N N 218 LCC C5M H5M3 sing N N 219 LCC C4 N4 sing N N 220 LCC C4 N3 doub N N 221 LCC N4 H41 sing N N 222 LCC N4 H42 sing N N 223 LCC N3 C2 sing N N 224 LCC C2 O2 doub N N 225 LCC "C3'" "C2'" sing N N 226 LCC "C3'" "O3'" sing N N 227 LCC "C3'" "H3'" sing N N 228 LCC "C2'" "O2'" sing N N 229 LCC "C2'" "H2'1" sing N N 230 LCC "O2'" "C6'" sing N N 231 LCC "O3'" H3T sing N N 232 LCC "C6'" "H6'1" sing N N 233 LCC "C6'" "H6'2" sing N N 234 LCC P O1P sing N N 235 LCC P O2P doub N N 236 LCC P OXT sing N N 237 LCC O1P H1P sing N N 238 LCC OXT HXT sing N N 239 LCG P OP1 doub N N 240 LCG P "O5'" sing N N 241 LCG P OP2 sing N N 242 LCG P OP3 sing N N 243 LCG "O5'" "C5'" sing N N 244 LCG "C5'" "C4'" sing N N 245 LCG "C5'" "H5'" sing N N 246 LCG "C5'" "H5''" sing N N 247 LCG "C3'" "C2'" sing N N 248 LCG "C3'" "C4'" sing N N 249 LCG "C3'" "O3'" sing N N 250 LCG "C3'" "H3'" sing N N 251 LCG "C6'" "C4'" sing N N 252 LCG "C6'" "O2'" sing N N 253 LCG "C6'" "H6'1" sing N N 254 LCG "C6'" "H6'2" sing N N 255 LCG N9 C8 sing Y N 256 LCG N9 C4 sing Y N 257 LCG N9 "C1'" sing N N 258 LCG C8 N7 doub Y N 259 LCG C8 H8 sing N N 260 LCG C4 C5 doub Y N 261 LCG C4 N3 sing N N 262 LCG N7 C5 sing Y N 263 LCG C5 C6 sing N N 264 LCG C6 O6 doub N N 265 LCG C6 N1 sing N N 266 LCG "C2'" "C1'" sing N N 267 LCG "C2'" "O2'" sing N N 268 LCG "C2'" "H2'" sing N N 269 LCG "C4'" "O4'" sing N N 270 LCG "C1'" "O4'" sing N N 271 LCG "C1'" "H1'" sing N N 272 LCG C2 N1 sing N N 273 LCG C2 N2 sing N N 274 LCG C2 N3 doub N N 275 LCG N1 H1 sing N N 276 LCG OP2 HOP2 sing N N 277 LCG N2 H21 sing N N 278 LCG N2 H22 sing N N 279 LCG "O3'" "HO3'" sing N N 280 LCG OP3 HOP3 sing N N 281 LKC N1 C2 sing N N 282 LKC N1 C6 sing N N 283 LKC N1 "C1'" sing N N 284 LKC C2 N3 sing N N 285 LKC C2 O2 doub N N 286 LKC N3 C4 doub N N 287 LKC C4 C5 sing N N 288 LKC C4 N4 sing N N 289 LKC C5 C6 doub N N 290 LKC C5 C5A sing N N 291 LKC C6 H6 sing N N 292 LKC N4 H41 sing N N 293 LKC N4 H42 sing N N 294 LKC "C1'" "C2'" sing N N 295 LKC "C1'" "O4'" sing N N 296 LKC "C1'" "H1'" sing N N 297 LKC "C2'" "C3'" sing N N 298 LKC "C2'" "O2'" sing N N 299 LKC "C2'" "H2'1" sing N N 300 LKC "C3'" "C4'" sing N N 301 LKC "C3'" "O3'" sing N N 302 LKC "C3'" "H3'" sing N N 303 LKC "C4'" "O4'" sing N N 304 LKC "C4'" "C5'" sing N N 305 LKC "C4'" "C6'" sing N N 306 LKC "O3'" H3T sing N N 307 LKC "C5'" "O5'" sing N N 308 LKC "C5'" "H5'1" sing N N 309 LKC "C5'" "H5'2" sing N N 310 LKC "O5'" H5T sing N N 311 LKC C5A H5M1 sing N N 312 LKC C5A H5M2 sing N N 313 LKC C5A H5M3 sing N N 314 LKC "O2'" "C6'" sing N N 315 LKC "C6'" "H6'1" sing N N 316 LKC "C6'" "H6'2" sing N N 317 TG N2 C2 sing N N 318 TG N1 C2 sing N N 319 TG N1 C6 sing N N 320 TG O6 C6 doub N N 321 TG C2 N3 doub N N 322 TG C6 C5 sing N N 323 TG N3 C4 sing N N 324 TG C5 C4 doub Y N 325 TG C5 N7 sing Y N 326 TG C4 N9 sing Y N 327 TG N7 C8 doub Y N 328 TG N9 C8 sing Y N 329 TG N9 "C1'" sing N N 330 TG "C1'" "O4'" sing N N 331 TG "C1'" "C2'" sing N N 332 TG "O4'" "C4'" sing N N 333 TG "C2'" "O2'" sing N N 334 TG "C2'" "C3'" sing N N 335 TG "C4'" "C3'" sing N N 336 TG "C3'" "O3'" sing N N 337 TG "O3'" P sing N N 338 TG P O1P doub N N 339 TG P O2P doub N N 340 TG "C1'" H1 sing N N 341 TG "C2'" H2 sing N N 342 TG "C3'" H3 sing N N 343 TG "C4'" H4 sing N N 344 TG "C4'" H5 sing N N 345 TG C8 H6 sing N N 346 TG N1 H7 sing N N 347 TG N2 H8 sing N N 348 TG N2 H9 sing N N 349 TG "O2'" H11 sing N N 350 TG P O3P sing N N 351 TG O3P H10 sing N N 352 U OP3 P sing N N 353 U OP3 HOP3 sing N N 354 U P OP1 doub N N 355 U P OP2 sing N N 356 U P "O5'" sing N N 357 U OP2 HOP2 sing N N 358 U "O5'" "C5'" sing N N 359 U "C5'" "C4'" sing N N 360 U "C5'" "H5'" sing N N 361 U "C5'" "H5''" sing N N 362 U "C4'" "O4'" sing N N 363 U "C4'" "C3'" sing N N 364 U "C4'" "H4'" sing N N 365 U "O4'" "C1'" sing N N 366 U "C3'" "O3'" sing N N 367 U "C3'" "C2'" sing N N 368 U "C3'" "H3'" sing N N 369 U "O3'" "HO3'" sing N N 370 U "C2'" "O2'" sing N N 371 U "C2'" "C1'" sing N N 372 U "C2'" "H2'" sing N N 373 U "O2'" "HO2'" sing N N 374 U "C1'" N1 sing N N 375 U "C1'" "H1'" sing N N 376 U N1 C2 sing N N 377 U N1 C6 sing N N 378 U C2 O2 doub N N 379 U C2 N3 sing N N 380 U N3 C4 sing N N 381 U N3 H3 sing N N 382 U C4 O4 doub N N 383 U C4 C5 sing N N 384 U C5 C6 doub N N 385 U C5 H5 sing N N 386 U C6 H6 sing N N 387 # _ndb_struct_conf_na.entry_id 7LNG _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 5 1_555 B U 12 1_555 0.054 -0.264 -0.201 2.576 -14.048 -5.335 1 A_A5:U12_B A 5 ? B 12 ? 20 1 1 A C 6 1_555 B G 11 1_555 0.355 -0.022 0.010 10.975 -15.027 2.668 2 A_C6:G11_B A 6 ? B 11 ? 19 1 1 A U 7 1_555 B A 10 1_555 0.178 -0.032 -0.119 11.204 -13.618 1.994 3 A_U7:A10_B A 7 ? B 10 ? 20 1 1 A U 8 1_555 B A 9 1_555 -0.049 -0.233 -0.090 -0.838 -17.192 3.524 4 A_U8:A9_B A 8 ? B 9 ? 20 1 1 A A 9 1_555 B U 8 1_555 -0.401 -0.300 0.254 -5.318 -10.358 4.412 5 A_A9:U8_B A 9 ? B 8 ? 20 1 1 A A 10 1_555 B U 7 1_555 0.369 -0.274 -0.261 -2.092 -25.630 -1.819 6 A_A10:U7_B A 10 ? B 7 ? 20 1 1 A G 11 1_555 B C 6 1_555 -0.515 -0.116 -0.033 -10.718 -12.308 -4.958 7 A_G11:C6_B A 11 ? B 6 ? 19 1 1 A U 12 1_555 B A 5 1_555 -0.001 -0.041 0.412 -8.022 -9.803 -10.142 8 A_U12:A5_B A 12 ? B 5 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 5 1_555 B U 12 1_555 A C 6 1_555 B G 11 1_555 0.538 -1.625 3.180 -3.445 2.538 31.080 -3.456 -1.606 2.966 4.708 6.391 31.366 1 AA_A5C6:G11U12_BB A 5 ? B 12 ? A 6 ? B 11 ? 1 A C 6 1_555 B G 11 1_555 A U 7 1_555 B A 10 1_555 -0.376 -1.565 3.309 -1.309 1.806 32.115 -3.145 0.444 3.231 3.259 2.362 32.190 2 AA_C6U7:A10G11_BB A 6 ? B 11 ? A 7 ? B 10 ? 1 A U 7 1_555 B A 10 1_555 A U 8 1_555 B A 9 1_555 0.181 -1.523 3.407 1.552 12.642 33.135 -4.291 -0.078 2.672 21.216 -2.604 35.434 3 AA_U7U8:A9A10_BB A 7 ? B 10 ? A 8 ? B 9 ? 1 A U 8 1_555 B A 9 1_555 A A 9 1_555 B U 8 1_555 -0.055 -1.438 3.190 -2.264 16.422 30.078 -4.695 -0.217 2.141 29.038 4.003 34.251 4 AA_U8A9:U8A9_BB A 8 ? B 9 ? A 9 ? B 8 ? 1 A A 9 1_555 B U 8 1_555 A A 10 1_555 B U 7 1_555 0.134 -1.201 3.226 6.195 10.041 34.510 -3.237 0.596 2.764 16.345 -10.084 36.413 5 AA_A9A10:U7U8_BB A 9 ? B 8 ? A 10 ? B 7 ? 1 A A 10 1_555 B U 7 1_555 A G 11 1_555 B C 6 1_555 0.358 -2.200 3.358 -1.289 11.751 26.032 -6.828 -0.985 2.161 24.540 2.691 28.548 6 AA_A10G11:C6U7_BB A 10 ? B 7 ? A 11 ? B 6 ? 1 A G 11 1_555 B C 6 1_555 A U 12 1_555 B A 5 1_555 0.021 -1.925 3.246 -0.445 1.325 32.641 -3.648 -0.112 3.167 2.356 0.791 32.670 7 AA_G11U12:A5C6_BB A 11 ? B 6 ? A 12 ? B 5 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' 1607034 1 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 2 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 GP3 ? ? GP3 ? ? 'SUBJECT OF INVESTIGATION' ? 2 TG ? ? TG ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' LCC 3 '[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' LCG 4 '2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one' TG 5 '4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE' LKC 6 "DIGUANOSINE-5'-TRIPHOSPHATE" GP3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5UEE _pdbx_initial_refinement_model.details ? # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.operator _pdbx_reflns_twin.fraction _pdbx_reflns_twin.type _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id 1 'H, K, L' 0.5652 pseudo-merohedral 1 1 2 '-K, -H, -L' 0.4348 pseudo-merohedral 2 2 #