HEADER TRANSFERASE 07-FEB-21 7LNH TITLE S-ADENOSYLMETHIONINE SYNTHETASE CO-CRYSTALLIZED WITH UPPNHP CAVEAT 7LNH YQP B 502 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: S-ADENOSYLMETHIONINE SYNTHASE ISOFORM TYPE-2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ADOMET SYNTHASE 2,METHIONINE ADENOSYLTRANSFERASE 2,MAT 2, COMPND 5 METHIONINE ADENOSYLTRANSFERASE II,MAT-II; COMPND 6 EC: 2.5.1.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MAT2A, AMS2, MATA2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS S-ADENOSYLMETHIONINE SYNTHETASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.L.TAN,C.J.JACKSON REVDAT 2 18-OCT-23 7LNH 1 REMARK REVDAT 1 02-MAR-22 7LNH 0 JRNL AUTH M.GADE,L.L.TAN,A.M.DAMRY,M.SANDHU,J.S.BROCK,A.DELANEY, JRNL AUTH 2 A.VILLAR-BRIONES,C.J.JACKSON,P.LAURINO JRNL TITL SUBSTRATE DYNAMICS CONTRIBUTE TO ENZYMATIC SPECIFICITY IN JRNL TITL 2 HUMAN AND BACTERIAL METHIONINE ADENOSYLTRANSFERASES. JRNL REF JACS AU V. 1 2349 2021 JRNL REFN ESSN 2691-3704 JRNL PMID 34977903 JRNL DOI 10.1021/JACSAU.1C00464 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 40352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4000 - 6.1600 1.00 2806 159 0.1836 0.2046 REMARK 3 2 6.1600 - 4.8900 1.00 2644 136 0.1861 0.2274 REMARK 3 3 4.8900 - 4.2700 1.00 2598 151 0.1651 0.1880 REMARK 3 4 4.2700 - 3.8800 1.00 2556 149 0.1888 0.2093 REMARK 3 5 3.8800 - 3.6100 1.00 2556 130 0.2117 0.2391 REMARK 3 6 3.6000 - 3.3900 0.99 2568 126 0.2444 0.2710 REMARK 3 7 3.3900 - 3.2200 1.00 2542 124 0.2596 0.3354 REMARK 3 8 3.2200 - 3.0800 0.99 2516 135 0.2773 0.3049 REMARK 3 9 3.0800 - 2.9600 1.00 2526 144 0.3014 0.3319 REMARK 3 10 2.9600 - 2.8600 1.00 2512 147 0.3216 0.3100 REMARK 3 11 2.8600 - 2.7700 1.00 2497 142 0.3225 0.3413 REMARK 3 12 2.7700 - 2.6900 1.00 2485 145 0.3554 0.3715 REMARK 3 13 2.6900 - 2.6200 0.99 2504 129 0.3999 0.3464 REMARK 3 14 2.6200 - 2.5600 0.99 2519 129 0.4307 0.4647 REMARK 3 15 2.5600 - 2.5000 0.98 2445 132 0.4857 0.5277 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.446 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.638 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 74.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 103.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6240 REMARK 3 ANGLE : 0.515 8447 REMARK 3 CHIRALITY : 0.043 941 REMARK 3 PLANARITY : 0.003 1094 REMARK 3 DIHEDRAL : 15.867 2297 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2767 -39.3219 32.2201 REMARK 3 T TENSOR REMARK 3 T11: 0.7390 T22: 0.5667 REMARK 3 T33: 0.4762 T12: 0.0749 REMARK 3 T13: 0.0557 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.2445 L22: 1.6420 REMARK 3 L33: 3.0248 L12: 1.7378 REMARK 3 L13: -0.0087 L23: -1.3033 REMARK 3 S TENSOR REMARK 3 S11: -0.2291 S12: -0.3422 S13: 0.2186 REMARK 3 S21: 0.1450 S22: -0.0161 S23: 0.2172 REMARK 3 S31: -0.3779 S32: 0.1114 S33: 0.2290 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9431 -37.9622 29.5208 REMARK 3 T TENSOR REMARK 3 T11: 1.0180 T22: 0.6079 REMARK 3 T33: 0.7699 T12: 0.0270 REMARK 3 T13: 0.0249 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 4.8944 L22: 1.6721 REMARK 3 L33: 2.9806 L12: 1.4253 REMARK 3 L13: -1.4450 L23: -0.5444 REMARK 3 S TENSOR REMARK 3 S11: -0.1839 S12: -0.4500 S13: 0.6403 REMARK 3 S21: 0.0410 S22: -0.0303 S23: -0.1319 REMARK 3 S31: -0.6495 S32: 0.2539 S33: 0.2133 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9608 -51.5809 8.7003 REMARK 3 T TENSOR REMARK 3 T11: 1.1682 T22: 1.1568 REMARK 3 T33: 0.6578 T12: -0.2845 REMARK 3 T13: 0.2197 T23: -0.0931 REMARK 3 L TENSOR REMARK 3 L11: 6.1594 L22: 1.6304 REMARK 3 L33: 4.4512 L12: -0.9140 REMARK 3 L13: -0.9503 L23: 0.9592 REMARK 3 S TENSOR REMARK 3 S11: -0.8946 S12: 1.3182 S13: -0.7362 REMARK 3 S21: 0.0104 S22: 0.0804 S23: 0.2547 REMARK 3 S31: 0.9806 S32: -0.8158 S33: 0.7486 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.4827 -35.9425 24.2826 REMARK 3 T TENSOR REMARK 3 T11: 1.0033 T22: 0.7573 REMARK 3 T33: 0.6568 T12: -0.1683 REMARK 3 T13: 0.1020 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 3.7926 L22: 2.3898 REMARK 3 L33: 4.2458 L12: -0.2184 REMARK 3 L13: -1.3655 L23: -0.3247 REMARK 3 S TENSOR REMARK 3 S11: -0.3051 S12: 0.1768 S13: 0.6004 REMARK 3 S21: 0.0002 S22: 0.3122 S23: -0.3107 REMARK 3 S31: -0.5855 S32: 0.5755 S33: -0.0324 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2338 -56.8699 45.4584 REMARK 3 T TENSOR REMARK 3 T11: 0.6263 T22: 0.8915 REMARK 3 T33: 0.6273 T12: -0.2191 REMARK 3 T13: 0.1216 T23: 0.1414 REMARK 3 L TENSOR REMARK 3 L11: 1.2930 L22: 0.7402 REMARK 3 L33: 1.5375 L12: -0.6426 REMARK 3 L13: 0.6702 L23: 0.2910 REMARK 3 S TENSOR REMARK 3 S11: 0.0542 S12: -0.0322 S13: -0.0397 REMARK 3 S21: 0.0821 S22: -0.0069 S23: -0.1162 REMARK 3 S31: -0.1377 S32: -0.1446 S33: -0.0384 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0658 -65.9659 26.0226 REMARK 3 T TENSOR REMARK 3 T11: 1.0156 T22: 1.5343 REMARK 3 T33: 0.6685 T12: -0.0464 REMARK 3 T13: -0.0471 T23: -0.0680 REMARK 3 L TENSOR REMARK 3 L11: 5.0845 L22: 4.3626 REMARK 3 L33: 5.4886 L12: -4.7330 REMARK 3 L13: -5.3203 L23: 4.9351 REMARK 3 S TENSOR REMARK 3 S11: 0.3214 S12: 1.5107 S13: -0.6411 REMARK 3 S21: -0.3704 S22: -1.2949 S23: 1.8373 REMARK 3 S31: -0.0687 S32: -2.9565 S33: 0.8228 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 139 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.3017 -51.6098 37.5827 REMARK 3 T TENSOR REMARK 3 T11: 0.6163 T22: 0.9322 REMARK 3 T33: 0.7323 T12: -0.3221 REMARK 3 T13: 0.1104 T23: 0.1076 REMARK 3 L TENSOR REMARK 3 L11: 2.2271 L22: 2.1567 REMARK 3 L33: 3.1447 L12: -0.1692 REMARK 3 L13: -0.7491 L23: -0.2006 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: 0.2812 S13: 0.2057 REMARK 3 S21: -0.1317 S22: 0.2140 S23: -0.1657 REMARK 3 S31: -0.3304 S32: 0.5528 S33: -0.1730 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 334 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8321 -67.3150 26.2375 REMARK 3 T TENSOR REMARK 3 T11: 0.8279 T22: 1.1079 REMARK 3 T33: 0.7311 T12: -0.2587 REMARK 3 T13: 0.1059 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 3.0783 L22: 3.2493 REMARK 3 L33: 3.3755 L12: 0.1913 REMARK 3 L13: -0.2689 L23: 0.2224 REMARK 3 S TENSOR REMARK 3 S11: -0.3620 S12: 0.6277 S13: -0.0387 REMARK 3 S21: -0.6983 S22: 0.5632 S23: -0.0190 REMARK 3 S31: 0.5715 S32: 0.6595 S33: -0.0588 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000254615. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40572 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 39.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 39.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5A1G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5 10% ETHYLENE REMARK 280 GLYCOL PEG3350 10%, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 94.09800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 94.09800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 94.09800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 94.09800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 94.09800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 94.09800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 94.09800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 ASN A 6 REMARK 465 GLY A 7 REMARK 465 PHE A 8 REMARK 465 HIS A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 465 PHE A 12 REMARK 465 ILE A 13 REMARK 465 GLU A 14 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 GLY B 3 REMARK 465 GLN B 4 REMARK 465 LEU B 5 REMARK 465 ASN B 6 REMARK 465 GLY B 7 REMARK 465 PHE B 8 REMARK 465 HIS B 9 REMARK 465 GLU B 10 REMARK 465 ALA B 11 REMARK 465 PHE B 12 REMARK 465 ILE B 13 REMARK 465 GLU B 14 REMARK 465 GLU B 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 51 33.61 -87.33 REMARK 500 THR A 62 105.22 -47.55 REMARK 500 GLU A 111 -157.72 -125.39 REMARK 500 VAL A 121 -56.68 -130.92 REMARK 500 ASP A 124 -5.01 71.20 REMARK 500 ILE A 198 -61.45 -97.85 REMARK 500 GLU A 212 31.56 -96.88 REMARK 500 VAL A 230 -38.75 -138.60 REMARK 500 ASP A 237 -145.23 -128.46 REMARK 500 THR A 270 -101.10 -116.66 REMARK 500 TYR A 335 15.95 54.12 REMARK 500 PRO A 357 5.79 -68.51 REMARK 500 SER A 384 -12.58 112.20 REMARK 500 GLU B 111 -160.70 -117.01 REMARK 500 VAL B 121 -66.66 -120.10 REMARK 500 HIS B 122 -147.37 -109.02 REMARK 500 HIS B 122 -22.80 -147.68 REMARK 500 LEU B 123 99.62 60.52 REMARK 500 ASP B 124 45.26 70.70 REMARK 500 ASN B 126 41.29 -108.07 REMARK 500 GLU B 127 -81.57 48.93 REMARK 500 ASP B 129 77.55 -110.60 REMARK 500 ALA B 132 146.24 -174.10 REMARK 500 GLN B 135 -153.93 -105.29 REMARK 500 LEU B 137 -128.37 34.76 REMARK 500 MET B 138 109.18 61.93 REMARK 500 PHE B 250 56.14 -157.55 REMARK 500 THR B 270 -100.75 -114.87 REMARK 500 TYR B 335 3.37 57.20 REMARK 500 ALA B 375 23.53 -77.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YQP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YQP B 502 DBREF 7LNH A 1 395 UNP P31153 METK2_HUMAN 1 395 DBREF 7LNH B 1 395 UNP P31153 METK2_HUMAN 1 395 SEQRES 1 A 395 MET ASN GLY GLN LEU ASN GLY PHE HIS GLU ALA PHE ILE SEQRES 2 A 395 GLU GLU GLY THR PHE LEU PHE THR SER GLU SER VAL GLY SEQRES 3 A 395 GLU GLY HIS PRO ASP LYS ILE CYS ASP GLN ILE SER ASP SEQRES 4 A 395 ALA VAL LEU ASP ALA HIS LEU GLN GLN ASP PRO ASP ALA SEQRES 5 A 395 LYS VAL ALA CYS GLU THR VAL ALA LYS THR GLY MET ILE SEQRES 6 A 395 LEU LEU ALA GLY GLU ILE THR SER ARG ALA ALA VAL ASP SEQRES 7 A 395 TYR GLN LYS VAL VAL ARG GLU ALA VAL LYS HIS ILE GLY SEQRES 8 A 395 TYR ASP ASP SER SER LYS GLY PHE ASP TYR LYS THR CYS SEQRES 9 A 395 ASN VAL LEU VAL ALA LEU GLU GLN GLN SER PRO ASP ILE SEQRES 10 A 395 ALA GLN GLY VAL HIS LEU ASP ARG ASN GLU GLU ASP ILE SEQRES 11 A 395 GLY ALA GLY ASP GLN GLY LEU MET PHE GLY TYR ALA THR SEQRES 12 A 395 ASP GLU THR GLU GLU CYS MET PRO LEU THR ILE VAL LEU SEQRES 13 A 395 ALA HIS LYS LEU ASN ALA LYS LEU ALA GLU LEU ARG ARG SEQRES 14 A 395 ASN GLY THR LEU PRO TRP LEU ARG PRO ASP SER LYS THR SEQRES 15 A 395 GLN VAL THR VAL GLN TYR MET GLN ASP ARG GLY ALA VAL SEQRES 16 A 395 LEU PRO ILE ARG VAL HIS THR ILE VAL ILE SER VAL GLN SEQRES 17 A 395 HIS ASP GLU GLU VAL CYS LEU ASP GLU MET ARG ASP ALA SEQRES 18 A 395 LEU LYS GLU LYS VAL ILE LYS ALA VAL VAL PRO ALA LYS SEQRES 19 A 395 TYR LEU ASP GLU ASP THR ILE TYR HIS LEU GLN PRO SER SEQRES 20 A 395 GLY ARG PHE VAL ILE GLY GLY PRO GLN GLY ASP ALA GLY SEQRES 21 A 395 LEU THR GLY ARG LYS ILE ILE VAL ASP THR TYR GLY GLY SEQRES 22 A 395 TRP GLY ALA HIS GLY GLY GLY ALA PHE SER GLY LYS ASP SEQRES 23 A 395 TYR THR LYS VAL ASP ARG SER ALA ALA TYR ALA ALA ARG SEQRES 24 A 395 TRP VAL ALA LYS SER LEU VAL LYS GLY GLY LEU CYS ARG SEQRES 25 A 395 ARG VAL LEU VAL GLN VAL SER TYR ALA ILE GLY VAL SER SEQRES 26 A 395 HIS PRO LEU SER ILE SER ILE PHE HIS TYR GLY THR SER SEQRES 27 A 395 GLN LYS SER GLU ARG GLU LEU LEU GLU ILE VAL LYS LYS SEQRES 28 A 395 ASN PHE ASP LEU ARG PRO GLY VAL ILE VAL ARG ASP LEU SEQRES 29 A 395 ASP LEU LYS LYS PRO ILE TYR GLN ARG THR ALA ALA TYR SEQRES 30 A 395 GLY HIS PHE GLY ARG ASP SER PHE PRO TRP GLU VAL PRO SEQRES 31 A 395 LYS LYS LEU LYS TYR SEQRES 1 B 395 MET ASN GLY GLN LEU ASN GLY PHE HIS GLU ALA PHE ILE SEQRES 2 B 395 GLU GLU GLY THR PHE LEU PHE THR SER GLU SER VAL GLY SEQRES 3 B 395 GLU GLY HIS PRO ASP LYS ILE CYS ASP GLN ILE SER ASP SEQRES 4 B 395 ALA VAL LEU ASP ALA HIS LEU GLN GLN ASP PRO ASP ALA SEQRES 5 B 395 LYS VAL ALA CYS GLU THR VAL ALA LYS THR GLY MET ILE SEQRES 6 B 395 LEU LEU ALA GLY GLU ILE THR SER ARG ALA ALA VAL ASP SEQRES 7 B 395 TYR GLN LYS VAL VAL ARG GLU ALA VAL LYS HIS ILE GLY SEQRES 8 B 395 TYR ASP ASP SER SER LYS GLY PHE ASP TYR LYS THR CYS SEQRES 9 B 395 ASN VAL LEU VAL ALA LEU GLU GLN GLN SER PRO ASP ILE SEQRES 10 B 395 ALA GLN GLY VAL HIS LEU ASP ARG ASN GLU GLU ASP ILE SEQRES 11 B 395 GLY ALA GLY ASP GLN GLY LEU MET PHE GLY TYR ALA THR SEQRES 12 B 395 ASP GLU THR GLU GLU CYS MET PRO LEU THR ILE VAL LEU SEQRES 13 B 395 ALA HIS LYS LEU ASN ALA LYS LEU ALA GLU LEU ARG ARG SEQRES 14 B 395 ASN GLY THR LEU PRO TRP LEU ARG PRO ASP SER LYS THR SEQRES 15 B 395 GLN VAL THR VAL GLN TYR MET GLN ASP ARG GLY ALA VAL SEQRES 16 B 395 LEU PRO ILE ARG VAL HIS THR ILE VAL ILE SER VAL GLN SEQRES 17 B 395 HIS ASP GLU GLU VAL CYS LEU ASP GLU MET ARG ASP ALA SEQRES 18 B 395 LEU LYS GLU LYS VAL ILE LYS ALA VAL VAL PRO ALA LYS SEQRES 19 B 395 TYR LEU ASP GLU ASP THR ILE TYR HIS LEU GLN PRO SER SEQRES 20 B 395 GLY ARG PHE VAL ILE GLY GLY PRO GLN GLY ASP ALA GLY SEQRES 21 B 395 LEU THR GLY ARG LYS ILE ILE VAL ASP THR TYR GLY GLY SEQRES 22 B 395 TRP GLY ALA HIS GLY GLY GLY ALA PHE SER GLY LYS ASP SEQRES 23 B 395 TYR THR LYS VAL ASP ARG SER ALA ALA TYR ALA ALA ARG SEQRES 24 B 395 TRP VAL ALA LYS SER LEU VAL LYS GLY GLY LEU CYS ARG SEQRES 25 B 395 ARG VAL LEU VAL GLN VAL SER TYR ALA ILE GLY VAL SER SEQRES 26 B 395 HIS PRO LEU SER ILE SER ILE PHE HIS TYR GLY THR SER SEQRES 27 B 395 GLN LYS SER GLU ARG GLU LEU LEU GLU ILE VAL LYS LYS SEQRES 28 B 395 ASN PHE ASP LEU ARG PRO GLY VAL ILE VAL ARG ASP LEU SEQRES 29 B 395 ASP LEU LYS LYS PRO ILE TYR GLN ARG THR ALA ALA TYR SEQRES 30 B 395 GLY HIS PHE GLY ARG ASP SER PHE PRO TRP GLU VAL PRO SEQRES 31 B 395 LYS LYS LEU LYS TYR HET YQP A 601 25 HET EDO B 501 4 HET YQP B 502 25 HETNAM YQP (2~{S})-2-AZANYL-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[2,4- HETNAM 2 YQP BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-3,4-BIS(OXIDANYL) HETNAM 3 YQP OXOLAN-2-YL]METHYL-METHYL-$L^{3}-SULFANYL]BUTANOIC HETNAM 4 YQP ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 YQP 2(C14 H21 N3 O7 S) FORMUL 4 EDO C2 H6 O2 FORMUL 6 HOH *28(H2 O) HELIX 1 AA1 HIS A 29 GLN A 47 1 19 HELIX 2 AA2 ASP A 78 GLY A 91 1 14 HELIX 3 AA3 SER A 95 GLY A 98 5 4 HELIX 4 AA4 SER A 114 GLN A 119 1 6 HELIX 5 AA5 ASN A 126 ILE A 130 5 5 HELIX 6 AA6 PRO A 151 GLY A 171 1 21 HELIX 7 AA7 CYS A 214 LYS A 225 1 12 HELIX 8 AA8 PRO A 232 LEU A 236 5 5 HELIX 9 AA9 GLY A 253 GLY A 257 5 5 HELIX 10 AB1 LYS A 265 THR A 270 1 6 HELIX 11 AB2 LYS A 289 GLY A 308 1 20 HELIX 12 AB3 SER A 341 LYS A 351 1 11 HELIX 13 AB4 GLY A 358 ASP A 365 1 8 HELIX 14 AB5 TYR A 371 ALA A 376 5 6 HELIX 15 AB6 PHE A 385 VAL A 389 5 5 HELIX 16 AB7 HIS B 29 ASP B 49 1 21 HELIX 17 AB8 ASP B 78 GLY B 91 1 14 HELIX 18 AB9 SER B 95 GLY B 98 5 4 HELIX 19 AC1 SER B 114 GLY B 120 1 7 HELIX 20 AC2 ASN B 126 ILE B 130 5 5 HELIX 21 AC3 PRO B 151 ASN B 170 1 20 HELIX 22 AC4 CYS B 214 LYS B 225 1 12 HELIX 23 AC5 VAL B 226 VAL B 231 1 6 HELIX 24 AC6 PRO B 232 LEU B 236 5 5 HELIX 25 AC7 GLY B 253 GLY B 257 5 5 HELIX 26 AC8 LYS B 265 THR B 270 1 6 HELIX 27 AC9 LYS B 289 GLY B 308 1 20 HELIX 28 AD1 ARG B 343 PHE B 353 1 11 HELIX 29 AD2 ARG B 356 LEU B 364 1 9 HELIX 30 AD3 PHE B 385 VAL B 389 5 5 SHEET 1 AA1 4 THR A 17 VAL A 25 0 SHEET 2 AA1 4 LEU A 176 ASP A 191 -1 O TYR A 188 N PHE A 18 SHEET 3 AA1 4 ALA A 194 HIS A 209 -1 O ARG A 199 N GLN A 187 SHEET 4 AA1 4 ILE A 241 LEU A 244 1 O ILE A 241 N HIS A 201 SHEET 1 AA2 4 ASN A 105 GLU A 111 0 SHEET 2 AA2 4 MET A 64 THR A 72 1 N LEU A 67 O ALA A 109 SHEET 3 AA2 4 LYS A 53 LYS A 61 -1 N VAL A 59 O LEU A 66 SHEET 4 AA2 4 GLY A 260 LEU A 261 -1 O GLY A 260 N ALA A 60 SHEET 1 AA3 2 ASP A 93 ASP A 94 0 SHEET 2 AA3 2 PHE A 99 ASP A 100 -1 O PHE A 99 N ASP A 94 SHEET 1 AA4 3 GLY A 136 THR A 143 0 SHEET 2 AA4 3 ARG A 313 TYR A 320 -1 O VAL A 316 N GLY A 140 SHEET 3 AA4 3 SER A 329 PHE A 333 -1 O PHE A 333 N LEU A 315 SHEET 1 AA5 4 THR B 17 VAL B 25 0 SHEET 2 AA5 4 LEU B 176 ASP B 191 -1 O TYR B 188 N PHE B 18 SHEET 3 AA5 4 ALA B 194 HIS B 209 -1 O GLN B 208 N ASP B 179 SHEET 4 AA5 4 ILE B 241 LEU B 244 1 O HIS B 243 N ILE B 203 SHEET 1 AA6 4 ASN B 105 GLU B 111 0 SHEET 2 AA6 4 MET B 64 THR B 72 1 N LEU B 67 O ALA B 109 SHEET 3 AA6 4 LYS B 53 LYS B 61 -1 N LYS B 61 O MET B 64 SHEET 4 AA6 4 GLY B 260 LEU B 261 -1 O GLY B 260 N ALA B 60 SHEET 1 AA7 2 ASP B 93 ASP B 94 0 SHEET 2 AA7 2 PHE B 99 ASP B 100 -1 O PHE B 99 N ASP B 94 SHEET 1 AA8 3 PHE B 139 THR B 143 0 SHEET 2 AA8 3 ARG B 313 SER B 319 -1 O VAL B 316 N GLY B 140 SHEET 3 AA8 3 SER B 329 PHE B 333 -1 O SER B 329 N SER B 319 SITE 1 AC1 12 HIS A 29 PRO A 30 ASP A 179 LYS A 181 SITE 2 AC1 12 SER A 247 PHE A 250 ASP A 258 GLU B 70 SITE 3 AC1 12 GLN B 113 ASP B 116 ILE B 117 ASP B 134 SITE 1 AC2 1 GLN B 112 SITE 1 AC3 16 ALA A 55 GLU A 70 GLN A 113 ILE A 117 SITE 2 AC3 16 GLY A 133 ASP A 134 HIS B 29 PRO B 30 SITE 3 AC3 16 ASP B 179 LYS B 181 SER B 247 ARG B 249 SITE 4 AC3 16 PHE B 250 GLY B 257 ASP B 258 HOH B 612 CRYST1 144.191 144.191 188.196 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006935 0.004004 0.000000 0.00000 SCALE2 0.000000 0.008008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005314 0.00000