HEADER HYDROLASE 08-FEB-21 7LNO TITLE STRUCTURE OF APO-CDD-1 BETA-LACTAMASE IN IMIDAZOLE AND MPD COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CDD-1 BETA-LACTAMASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE; SOURCE 3 ORGANISM_TAXID: 1496; SOURCE 4 GENE: BLAR1_4, BLAR1_1, E5F39_11445, SAMEA2239407_03320, SOURCE 5 SAMEA3374989_01677; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-LACTAMASE, ANTIBIOTIC RESISTANCE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.A.SMITH,S.B.VAKULENKO,N.K.STEWART REVDAT 4 15-NOV-23 7LNO 1 REMARK REVDAT 3 18-OCT-23 7LNO 1 REMARK REVDAT 2 23-JUN-21 7LNO 1 JRNL REVDAT 1 12-MAY-21 7LNO 0 JRNL AUTH N.K.STEWART,M.TOTH,A.STASYUK,S.B.VAKULENKO,C.A.SMITH JRNL TITL IN CRYSTALLO TIME-RESOLVED INTERACTION OF THE CLOSTRIDIOIDES JRNL TITL 2 DIFFICILE CDD-1 ENZYME WITH AVIBACTAM PROVIDES NEW INSIGHTS JRNL TITL 3 INTO THE CATALYTIC MECHANISM OF CLASS D BETA-LACTAMASES. JRNL REF ACS INFECT DIS. V. 7 1765 2021 JRNL REFN ESSN 2373-8227 JRNL PMID 33908775 JRNL DOI 10.1021/ACSINFECDIS.1C00094 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 44301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0000 - 3.9800 1.00 2871 162 0.1501 0.1890 REMARK 3 2 3.9800 - 3.1600 1.00 2716 146 0.1461 0.1613 REMARK 3 3 3.1600 - 2.7600 1.00 2689 132 0.1800 0.1839 REMARK 3 4 2.7600 - 2.5100 1.00 2653 139 0.1680 0.1908 REMARK 3 5 2.5100 - 2.3300 1.00 2640 125 0.1669 0.1785 REMARK 3 6 2.3300 - 2.1900 1.00 2612 139 0.1576 0.2018 REMARK 3 7 2.1900 - 2.0800 1.00 2633 135 0.1555 0.1889 REMARK 3 8 2.0800 - 1.9900 1.00 2587 144 0.1463 0.1946 REMARK 3 9 1.9900 - 1.9100 1.00 2612 133 0.1562 0.2372 REMARK 3 10 1.9100 - 1.8500 0.99 2584 133 0.1955 0.2869 REMARK 3 11 1.8500 - 1.7900 1.00 2603 126 0.1661 0.2138 REMARK 3 12 1.7900 - 1.7400 1.00 2590 130 0.1524 0.1993 REMARK 3 13 1.7400 - 1.6900 1.00 2596 128 0.1498 0.2146 REMARK 3 14 1.6900 - 1.6500 1.00 2601 125 0.1520 0.2290 REMARK 3 15 1.6500 - 1.6100 1.00 2584 133 0.1620 0.1929 REMARK 3 16 1.6100 - 1.5800 0.99 2556 144 0.1933 0.2624 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2144 REMARK 3 ANGLE : 0.989 2908 REMARK 3 CHIRALITY : 0.063 307 REMARK 3 PLANARITY : 0.007 370 REMARK 3 DIHEDRAL : 10.795 296 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44557 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 42.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 6EDM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 2.4 M AMMONIUM SULFATE. REMARK 280 CRYSTALS TRANSFERRED TO 0.1 M IMIDAZOLE PH 7.0, 85% 2-METHYL-2,4- REMARK 280 PENTANDIOL (MPD), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 61.66050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.66050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.66050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.66050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.66050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.66050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 61.66050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 61.66050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 61.66050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 61.66050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 61.66050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 61.66050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 61.66050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 61.66050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 61.66050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 61.66050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 61.66050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 61.66050 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 30.83025 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 92.49075 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 92.49075 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 30.83025 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 30.83025 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 30.83025 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 92.49075 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 92.49075 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 30.83025 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 92.49075 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 30.83025 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 92.49075 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 30.83025 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 92.49075 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 92.49075 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 92.49075 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 30.83025 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 92.49075 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 30.83025 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 30.83025 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 30.83025 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 92.49075 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 92.49075 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 30.83025 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 30.83025 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 92.49075 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 92.49075 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 92.49075 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 92.49075 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 30.83025 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 92.49075 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 30.83025 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 92.49075 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 30.83025 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 30.83025 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 30.83025 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 402 LIES ON A SPECIAL POSITION. REMARK 375 O4 SO4 A 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 655 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 ASN A 6 REMARK 465 PHE A 7 REMARK 465 ILE A 8 REMARK 465 TRP A 9 REMARK 465 ILE A 10 REMARK 465 ALA A 11 REMARK 465 ILE A 12 REMARK 465 LEU A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 GLY A 16 REMARK 465 VAL A 17 REMARK 465 VAL A 18 REMARK 465 MET A 19 REMARK 465 VAL A 20 REMARK 465 MET A 21 REMARK 465 TYR A 22 REMARK 465 TYR A 23 REMARK 465 ALA A 24 REMARK 465 VAL A 25 REMARK 465 LYS A 26 REMARK 465 LYS A 27 REMARK 465 HIS A 28 REMARK 465 ASN A 29 REMARK 465 ASP A 30 REMARK 465 ILE A 31 REMARK 465 ASN A 32 REMARK 465 GLN A 33 REMARK 465 LYS A 34 REMARK 465 THR A 35 REMARK 465 ASP A 36 REMARK 465 LYS A 37 REMARK 465 ASN A 38 REMARK 465 TYR A 39 REMARK 465 ILE A 40 REMARK 465 LYS A 41 REMARK 465 SER A 42 REMARK 465 GLU A 43 REMARK 465 LEU A 44 REMARK 465 ASN A 45 REMARK 465 LYS A 46 REMARK 465 SER A 47 REMARK 465 LYS A 48 REMARK 465 ILE A 49 REMARK 465 LYS A 50 REMARK 465 ASN A 51 REMARK 465 ASN A 52 REMARK 465 ASP A 53 REMARK 465 LYS A 54 REMARK 465 ASN A 55 REMARK 465 LYS A 56 REMARK 465 LYS A 57 REMARK 465 GLU A 58 REMARK 465 SER A 59 REMARK 465 VAL A 310 REMARK 465 ARG A 311 REMARK 465 GLU A 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 90 75.84 67.89 REMARK 500 CYS A 101 -143.31 50.17 REMARK 500 ASN A 138 48.16 -89.46 REMARK 500 GLU A 183 67.68 -101.28 REMARK 500 SER A 202 -143.48 -141.51 REMARK 500 GLU A 274 69.76 36.80 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7LNO A 1 312 UNP A0A160YKM3_CLODI DBREF2 7LNO A A0A160YKM3 1 312 SEQADV 7LNO ALA A 238 UNP A0A160YKM LYS 238 ENGINEERED MUTATION SEQADV 7LNO ALA A 244 UNP A0A160YKM LYS 244 ENGINEERED MUTATION SEQRES 1 A 312 MET LYS ARG LYS LYS ASN PHE ILE TRP ILE ALA ILE LEU SEQRES 2 A 312 LEU VAL GLY VAL VAL MET VAL MET TYR TYR ALA VAL LYS SEQRES 3 A 312 LYS HIS ASN ASP ILE ASN GLN LYS THR ASP LYS ASN TYR SEQRES 4 A 312 ILE LYS SER GLU LEU ASN LYS SER LYS ILE LYS ASN ASN SEQRES 5 A 312 ASP LYS ASN LYS LYS GLU SER VAL ASN ILE VAL ASP TYR SEQRES 6 A 312 SER ASP CYS PHE GLU GLY ILE SER GLY GLY ALA ILE PHE SEQRES 7 A 312 CYS ASN THR LYS ASN LYS GLU TYR ASN ILE TYR ASN LYS SEQRES 8 A 312 GLU LEU ILE GLU THR ARG ARG SER PRO CYS SER THR PHE SEQRES 9 A 312 KCX ILE VAL SER THR LEU ILE GLY LEU GLU LYS GLY VAL SEQRES 10 A 312 ILE ASN SER LYS GLU SER VAL MET GLY TYR ASP GLY THR SEQRES 11 A 312 ASP TYR PRO ASN LYS ASN TRP ASN LYS ASN LEU SER LEU SEQRES 12 A 312 GLU GLU ALA PHE LYS GLU SER CYS VAL TRP TYR TYR LYS SEQRES 13 A 312 LYS LEU ILE ASN LYS VAL ASP ALA LYS SER VAL GLN ASN SEQRES 14 A 312 ILE LEU ASP ASP LEU LYS TYR GLY ASN CYS ASP ILE SER SEQRES 15 A 312 GLU TRP GLU GLY ASP LEU LYS ASN GLY LYS GLY HIS LEU SEQRES 16 A 312 ASN GLY PHE TRP LEU GLU SER SER LEU GLN ILE SER PRO SEQRES 17 A 312 LYS GLU GLN VAL GLN THR MET ALA LYS ILE PHE GLU GLY SEQRES 18 A 312 ASP THR ASN PHE LYS LYS GLU HIS ILE ASN ILE LEU ARG SEQRES 19 A 312 ASP ILE MET ALA ILE ASP VAL ASN ASP ALA ASN ILE ASN SEQRES 20 A 312 VAL TYR GLY LYS THR GLY THR GLY PHE ASP GLU LYS ASN SEQRES 21 A 312 LYS ARG VAL ASP ALA TRP PHE VAL GLY MET LEU GLU ARG SEQRES 22 A 312 GLU GLY ASP THR TYR TYR PHE ALA ILE LYS SER ASP ASP SEQRES 23 A 312 SER ASN LYS GLU ILE THR GLY PRO LYS VAL LYS GLU ILE SEQRES 24 A 312 ALA ILE ASN ILE ILE LYS LYS TYR TYR SER VAL ARG GLU MODRES 7LNO KCX A 105 LYS MODIFIED RESIDUE HET KCX A 105 12 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET MPD A 408 8 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 MPD C6 H14 O2 FORMUL 10 HOH *229(H2 O) HELIX 1 AA1 TYR A 65 GLU A 70 5 6 HELIX 2 AA2 ASN A 90 GLU A 95 1 6 HELIX 3 AA3 PRO A 100 THR A 103 5 4 HELIX 4 AA4 PHE A 104 LYS A 115 1 12 HELIX 5 AA5 ASN A 134 ASN A 138 5 5 HELIX 6 AA6 SER A 142 SER A 150 1 9 HELIX 7 AA7 CYS A 151 ASN A 160 1 10 HELIX 8 AA8 ASP A 163 LYS A 175 1 13 HELIX 9 AA9 ASP A 187 GLY A 191 5 5 HELIX 10 AB1 SER A 207 GLU A 220 1 14 HELIX 11 AB2 LYS A 226 MET A 237 1 12 HELIX 12 AB3 THR A 292 TYR A 308 1 17 SHEET 1 AA1 7 ASN A 61 ILE A 62 0 SHEET 2 AA1 7 GLU A 85 TYR A 89 1 O TYR A 86 N ASN A 61 SHEET 3 AA1 7 GLY A 74 ASN A 80 -1 N PHE A 78 O ASN A 87 SHEET 4 AA1 7 ASP A 276 SER A 284 -1 O TYR A 279 N CYS A 79 SHEET 5 AA1 7 ARG A 262 ARG A 273 -1 N LEU A 271 O TYR A 278 SHEET 6 AA1 7 ASN A 247 ASP A 257 -1 N ASP A 257 O ARG A 262 SHEET 7 AA1 7 ALA A 238 ILE A 239 -1 N ILE A 239 O VAL A 248 LINK C PHE A 104 N KCX A 105 1555 1555 1.33 LINK C KCX A 105 N ILE A 106 1555 1555 1.33 CRYST1 123.321 123.321 123.321 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008109 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008109 0.00000