HEADER HYDROLASE 10-FEB-21 7LOL TITLE THE STRUCTURE OF AGMATINASE FROM E. COLI AT 1.8 A DISPLAYING UREA AND TITLE 2 AGMATINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGMATINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AGMATINE UREOHYDROLASE,AUH; COMPND 5 EC: 3.5.3.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: SPEB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.MATURANA,M.FIGUEROA,F.GONZALEZ-ORDENES,P.VILLALOBOS,J.MARTINEZ- AUTHOR 2 OYANEDEL,E.A.URIBE,V.CASTRO-FERNANDEZ REVDAT 3 18-OCT-23 7LOL 1 REMARK REVDAT 2 19-MAY-21 7LOL 1 JRNL REVDAT 1 12-MAY-21 7LOL 0 JRNL AUTH P.MATURANA,M.S.ORELLANA,S.M.HERRERA,I.MARTINEZ,M.FIGUEROA, JRNL AUTH 2 J.MARTINEZ-OYANEDEL,V.CASTRO-FERNANDEZ,E.URIBE JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI AGMATINASE: CATALYTIC JRNL TITL 2 MECHANISM AND RESIDUES RELEVANT FOR SUBSTRATE SPECIFICITY. JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 33946272 JRNL DOI 10.3390/IJMS22094769 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.0000 - 3.7400 0.99 2762 162 0.1533 0.1619 REMARK 3 2 3.7400 - 2.9700 1.00 2720 105 0.1699 0.1927 REMARK 3 3 2.9700 - 2.6000 1.00 2670 133 0.1807 0.1917 REMARK 3 4 2.6000 - 2.3600 1.00 2617 153 0.1760 0.2086 REMARK 3 5 2.3600 - 2.1900 1.00 2642 148 0.1688 0.2316 REMARK 3 6 2.1900 - 2.0600 1.00 2649 116 0.1767 0.2235 REMARK 3 7 2.0600 - 1.9600 1.00 2599 139 0.1815 0.2583 REMARK 3 8 1.9600 - 1.8700 1.00 2615 148 0.2036 0.2399 REMARK 3 9 1.8700 - 1.8000 1.00 2609 140 0.2354 0.2643 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.127 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.634 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2330 REMARK 3 ANGLE : 1.354 3160 REMARK 3 CHIRALITY : 0.091 348 REMARK 3 PLANARITY : 0.007 416 REMARK 3 DIHEDRAL : 16.901 833 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LOL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25154 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.90 REMARK 200 R MERGE (I) : 0.06576 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.89200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3NPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AGMATINASE AT 12 MG/ML IN BUFFER 25 MM REMARK 280 TRIS-HCL PH 8.0, 2 MM MNCL2. CONDITION: 0.1 M PHOSPHATE/CITRATE REMARK 280 PH 4.2 AND 40% PEG 300, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 40.87300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 23.59804 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 69.14533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 40.87300 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 23.59804 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 69.14533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 40.87300 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 23.59804 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 69.14533 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 40.87300 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 23.59804 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 69.14533 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 40.87300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 23.59804 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 69.14533 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 40.87300 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 23.59804 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 69.14533 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 47.19608 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 138.29067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 47.19608 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 138.29067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 47.19608 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 138.29067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 47.19608 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 138.29067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 47.19608 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 138.29067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 47.19608 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 138.29067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -40.87300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -70.79411 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 40.87300 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -70.79411 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 40.87300 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -23.59804 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -69.14533 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 -94.39215 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -69.14533 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 -40.87300 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 -23.59804 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -69.14533 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MN MN A 404 LIES ON A SPECIAL POSITION. REMARK 375 C TRS A 406 LIES ON A SPECIAL POSITION. REMARK 375 N TRS A 406 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 HIS A 6 REMARK 465 GLN A 7 REMARK 465 TYR A 8 REMARK 465 ASP A 9 REMARK 465 ASN A 10 REMARK 465 GLY A 305 REMARK 465 GLU A 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 46 OG1 CG2 REMARK 470 SER A 47 OG REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 ASN A 157 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C URE A 405 O HOH A 501 1.54 REMARK 500 N2 URE A 405 O HOH A 501 1.84 REMARK 500 O URE A 405 O HOH A 501 1.95 REMARK 500 O HOH A 634 O HOH A 637 2.04 REMARK 500 O HOH A 636 O HOH A 644 2.04 REMARK 500 O HOH A 508 O HOH A 635 2.14 REMARK 500 N1 URE A 405 O HOH A 501 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 641 O HOH A 641 18444 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 56 N PRO A 56 CA 0.203 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 56 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 16 56.93 -152.38 REMARK 500 ARG A 187 28.30 -149.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 126 ND1 REMARK 620 2 ASP A 149 OD2 94.4 REMARK 620 3 ASP A 153 OD2 94.6 90.1 REMARK 620 4 ASP A 230 OD2 103.5 83.8 161.2 REMARK 620 5 URE A 405 O 109.0 155.3 95.8 82.9 REMARK 620 6 HOH A 501 O 160.5 105.0 87.1 77.5 51.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 149 OD1 REMARK 620 2 HIS A 151 ND1 95.2 REMARK 620 3 ASP A 230 OD2 86.0 172.0 REMARK 620 4 ASP A 232 OD1 78.3 100.8 87.2 REMARK 620 5 ASP A 232 OD2 134.1 92.7 92.2 55.8 REMARK 620 6 HOH A 501 O 95.5 93.0 79.0 165.3 129.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 404 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 281 OE1 REMARK 620 2 GLN A 281 OE1 0.0 REMARK 620 3 HOH A 614 O 90.8 90.8 REMARK 620 4 HOH A 614 O 87.0 87.0 94.8 REMARK 620 N 1 2 3 DBREF1 7LOL A 1 306 UNP A0A4S5B4F2_ECOLI DBREF2 7LOL A A0A4S5B4F2 1 306 SEQRES 1 A 306 MET SER THR LEU GLY HIS GLN TYR ASP ASN SER LEU VAL SEQRES 2 A 306 SER ASN ALA PHE GLY PHE LEU ARG LEU PRO MET ASN PHE SEQRES 3 A 306 GLN PRO TYR ASP SER ASP ALA ASP TRP VAL ILE THR GLY SEQRES 4 A 306 VAL PRO PHE ASP MET ALA THR SER GLY ARG ALA GLY GLY SEQRES 5 A 306 ARG HIS GLY PRO ALA ALA ILE ARG GLN VAL SER THR ASN SEQRES 6 A 306 LEU ALA TRP GLU HIS ASN ARG PHE PRO TRP ASN PHE ASP SEQRES 7 A 306 MET ARG GLU ARG LEU ASN VAL VAL ASP CYS GLY ASP LEU SEQRES 8 A 306 VAL TYR ALA PHE GLY ASP ALA ARG GLU MET SER GLU LYS SEQRES 9 A 306 LEU GLN ALA HIS ALA GLU LYS LEU LEU ALA ALA GLY LYS SEQRES 10 A 306 ARG MET LEU SER PHE GLY GLY ASP HIS PHE VAL THR LEU SEQRES 11 A 306 PRO LEU LEU ARG ALA HIS ALA LYS HIS PHE GLY LYS MET SEQRES 12 A 306 ALA LEU VAL HIS PHE ASP ALA HIS THR ASP THR TYR ALA SEQRES 13 A 306 ASN GLY CYS GLU PHE ASP HIS GLY THR MET PHE TYR THR SEQRES 14 A 306 ALA PRO LYS GLU GLY LEU ILE ASP PRO ASN HIS SER VAL SEQRES 15 A 306 GLN ILE GLY ILE ARG THR GLU PHE ASP LYS ASP ASN GLY SEQRES 16 A 306 PHE THR VAL LEU ASP ALA CYS GLN VAL ASN ASP ARG SER SEQRES 17 A 306 VAL ASP ASP VAL ILE ALA GLN VAL LYS GLN ILE VAL GLY SEQRES 18 A 306 ASP MET PRO VAL TYR LEU THR PHE ASP ILE ASP CYS LEU SEQRES 19 A 306 ASP PRO ALA PHE ALA PRO GLY THR GLY THR PRO VAL ILE SEQRES 20 A 306 GLY GLY LEU THR SER ASP ARG ALA ILE LYS LEU VAL ARG SEQRES 21 A 306 GLY LEU LYS ASP LEU ASN ILE VAL GLY MET ASP VAL VAL SEQRES 22 A 306 GLU VAL ALA PRO ALA TYR ASP GLN SER GLU ILE THR ALA SEQRES 23 A 306 LEU ALA ALA ALA THR LEU ALA LEU GLU MET LEU TYR ILE SEQRES 24 A 306 GLN ALA ALA LYS LYS GLY GLU HET AG2 A 401 9 HET MN A 402 1 HET MN A 403 1 HET MN A 404 1 HET URE A 405 4 HET TRS A 406 8 HETNAM AG2 AGMATINE HETNAM MN MANGANESE (II) ION HETNAM URE UREA HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN AG2 (4-AMINOBUTYL)GUANIDINE HETSYN TRS TRIS BUFFER FORMUL 2 AG2 C5 H14 N4 FORMUL 3 MN 3(MN 2+) FORMUL 6 URE C H4 N2 O FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 8 HOH *149(H2 O) HELIX 1 AA1 GLY A 18 LEU A 22 5 5 HELIX 2 AA2 GLN A 27 SER A 31 5 5 HELIX 3 AA3 HIS A 54 SER A 63 1 10 HELIX 4 AA4 SER A 63 TRP A 68 1 6 HELIX 5 AA5 ASP A 78 LEU A 83 1 6 HELIX 6 AA6 VAL A 92 GLY A 96 5 5 HELIX 7 AA7 ASP A 97 ALA A 115 1 19 HELIX 8 AA8 ASP A 125 PHE A 127 5 3 HELIX 9 AA9 VAL A 128 GLY A 141 1 14 HELIX 10 AB1 THR A 165 GLU A 173 1 9 HELIX 11 AB2 ASP A 177 HIS A 180 5 4 HELIX 12 AB3 ASP A 200 ARG A 207 1 8 HELIX 13 AB4 SER A 208 GLY A 221 1 14 HELIX 14 AB5 ASP A 232 LEU A 234 5 3 HELIX 15 AB6 THR A 251 LEU A 262 1 12 HELIX 16 AB7 ALA A 276 ASP A 280 5 5 HELIX 17 AB8 GLU A 283 ALA A 302 1 20 SHEET 1 AA1 8 VAL A 85 ASP A 90 0 SHEET 2 AA1 8 TRP A 35 GLY A 39 1 N ILE A 37 O CYS A 88 SHEET 3 AA1 8 ARG A 118 PHE A 122 1 O ARG A 118 N VAL A 36 SHEET 4 AA1 8 ILE A 267 VAL A 273 1 O VAL A 272 N SER A 121 SHEET 5 AA1 8 VAL A 225 ASP A 230 1 N VAL A 225 O VAL A 268 SHEET 6 AA1 8 ALA A 144 PHE A 148 1 N PHE A 148 O ASP A 230 SHEET 7 AA1 8 VAL A 182 ILE A 184 1 O ILE A 184 N HIS A 147 SHEET 8 AA1 8 THR A 197 LEU A 199 1 O LEU A 199 N GLN A 183 LINK ND1 HIS A 126 MN MN A 402 1555 1555 2.20 LINK OD2 ASP A 149 MN MN A 402 1555 1555 2.06 LINK OD1 ASP A 149 MN MN A 403 1555 1555 2.07 LINK ND1 HIS A 151 MN MN A 403 1555 1555 2.31 LINK OD2 ASP A 153 MN MN A 402 1555 1555 2.33 LINK OD2 ASP A 230 MN MN A 402 1555 1555 2.37 LINK OD2 ASP A 230 MN MN A 403 1555 1555 2.26 LINK OD1 ASP A 232 MN MN A 403 1555 1555 2.47 LINK OD2 ASP A 232 MN MN A 403 1555 1555 2.15 LINK OE1 GLN A 281 MN MN A 404 1555 1555 2.19 LINK OE1 GLN A 281 MN MN A 404 1555 2445 2.19 LINK MN MN A 402 O URE A 405 1555 1555 2.29 LINK MN MN A 402 O HOH A 501 1555 1555 2.19 LINK MN MN A 403 O HOH A 501 1555 1555 2.23 LINK MN MN A 404 O HOH A 614 1555 1555 2.36 LINK MN MN A 404 O HOH A 614 1555 2445 2.36 CISPEP 1 PHE A 73 PRO A 74 0 0.58 CISPEP 2 GLY A 123 GLY A 124 0 -7.93 CRYST1 81.746 81.746 207.436 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012233 0.007063 0.000000 0.00000 SCALE2 0.000000 0.014125 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004821 0.00000