HEADER VIRAL PROTEIN 11-FEB-21 7LP8 TITLE THE CRYSTAL STRUCTURE OF I38T MUTANT PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH SJ000983476 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/LUXEMBOURG/43/2009(H1N1)); SOURCE 3 ORGANISM_TAXID: 655278; SOURCE 4 STRAIN: A/LUXEMBOURG/43/2009(H1N1); SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,P.J.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 3 18-OCT-23 7LP8 1 REMARK REVDAT 2 11-OCT-23 7LP8 1 JRNL REVDAT 1 16-FEB-22 7LP8 0 JRNL AUTH M.G.CUYPERS,P.J.SLAVISH,Z.RANKOVIC,S.W.WHITE JRNL TITL THE CRYSTAL STRUCTURE OF I38T MUTANT PA ENDONUCLEASE JRNL TITL 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH SJ000983476 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, REMARK 1 AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, REMARK 1 AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, REMARK 1 AUTH 4 S.W.WHITE REMARK 1 TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF REMARK 1 TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS REMARK 1 TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE REMARK 1 TITL 4 RESISTANCE POTENTIAL. REMARK 1 REF EUR.J.MED.CHEM. V. 247 15035 2023 REMARK 1 REFN ISSN 0223-5234 REMARK 1 PMID 36603507 REMARK 1 DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4700 - 3.6800 1.00 3011 165 0.1840 0.2014 REMARK 3 2 3.6800 - 2.9200 1.00 2868 151 0.2586 0.2956 REMARK 3 3 2.9200 - 2.5500 1.00 2848 131 0.3312 0.3836 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.417 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.468 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1554 REMARK 3 ANGLE : 0.541 2103 REMARK 3 CHIRALITY : 0.041 223 REMARK 3 PLANARITY : 0.003 266 REMARK 3 DIHEDRAL : 8.996 230 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -5 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0093 15.9121 1.3224 REMARK 3 T TENSOR REMARK 3 T11: 1.1848 T22: 1.1816 REMARK 3 T33: 0.8285 T12: 0.1250 REMARK 3 T13: 0.0140 T23: 0.0549 REMARK 3 L TENSOR REMARK 3 L11: 8.0084 L22: 5.7821 REMARK 3 L33: 4.2679 L12: 1.3745 REMARK 3 L13: 3.1289 L23: 1.0249 REMARK 3 S TENSOR REMARK 3 S11: -0.4265 S12: 1.2553 S13: 0.4090 REMARK 3 S21: -0.6466 S22: 0.1321 S23: -0.0079 REMARK 3 S31: -0.2443 S32: -0.3630 S33: 0.2449 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5486 4.2035 11.7166 REMARK 3 T TENSOR REMARK 3 T11: 0.6910 T22: 0.5946 REMARK 3 T33: 0.5037 T12: 0.0364 REMARK 3 T13: 0.0201 T23: -0.1413 REMARK 3 L TENSOR REMARK 3 L11: 2.4637 L22: 5.5158 REMARK 3 L33: 9.2338 L12: -1.5517 REMARK 3 L13: 1.5692 L23: -4.6045 REMARK 3 S TENSOR REMARK 3 S11: 0.0930 S12: -0.1547 S13: -0.0252 REMARK 3 S21: -0.6379 S22: -0.0065 S23: 0.1618 REMARK 3 S31: 0.7313 S32: -0.6195 S33: -0.1101 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6739 -1.2033 23.5740 REMARK 3 T TENSOR REMARK 3 T11: 0.6408 T22: 0.8154 REMARK 3 T33: 0.4172 T12: 0.0256 REMARK 3 T13: 0.0340 T23: -0.1078 REMARK 3 L TENSOR REMARK 3 L11: 4.8743 L22: 8.9455 REMARK 3 L33: 2.8759 L12: -1.7249 REMARK 3 L13: -0.4429 L23: -3.2672 REMARK 3 S TENSOR REMARK 3 S11: -0.4124 S12: -0.3831 S13: -0.0900 REMARK 3 S21: -0.1555 S22: 0.4112 S23: 0.4939 REMARK 3 S31: 0.1589 S32: -0.8537 S33: 0.0177 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2741 14.3658 22.2976 REMARK 3 T TENSOR REMARK 3 T11: 0.5986 T22: 0.6934 REMARK 3 T33: 0.4439 T12: 0.1088 REMARK 3 T13: -0.0231 T23: -0.2203 REMARK 3 L TENSOR REMARK 3 L11: 1.4959 L22: 5.3372 REMARK 3 L33: 3.6593 L12: 0.2245 REMARK 3 L13: -0.4655 L23: -2.3109 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: 0.0068 S13: 0.0538 REMARK 3 S21: 0.0768 S22: -0.3346 S23: 0.2721 REMARK 3 S31: -0.0066 S32: -0.2171 S33: 0.2104 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7068 15.5042 17.1263 REMARK 3 T TENSOR REMARK 3 T11: 0.9829 T22: 2.3927 REMARK 3 T33: 1.1912 T12: -0.1827 REMARK 3 T13: -0.4018 T23: 0.5246 REMARK 3 L TENSOR REMARK 3 L11: 6.7912 L22: 1.9998 REMARK 3 L33: 3.1880 L12: -5.0001 REMARK 3 L13: 1.5391 L23: -2.0741 REMARK 3 S TENSOR REMARK 3 S11: -0.3906 S12: 0.2363 S13: 0.3004 REMARK 3 S21: 0.0951 S22: 0.0057 S23: -0.5539 REMARK 3 S31: -0.2051 S32: 0.6005 S33: 0.3308 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9199 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 74.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 1.09000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5VPT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.93850 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.93850 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.30200 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.93850 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.93850 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.30200 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.93850 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.93850 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.30200 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.93850 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.93850 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.30200 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.93850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.93850 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.30200 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.93850 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.93850 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.30200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.93850 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.93850 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.30200 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.93850 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.93850 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.30200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -246.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A -6 CG CD1 CD2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 34 CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 113 CD CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 ASN A 136 CG OD1 ND2 REMARK 470 LYS A 137 CD CE NZ REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 153 CD OE1 OE2 REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 ARG A 192 CD NE CZ NH1 NH2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 125 -167.67 -122.11 REMARK 500 GLU A 141 -72.35 59.25 REMARK 500 LYS A 142 0.14 -69.61 REMARK 500 MET A 155 118.61 -161.75 REMARK 500 LYS A 158 14.00 56.88 REMARK 500 THR A 162 -58.80 60.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 YAD A 201 REMARK 610 QQ4 A 202 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 203 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 97.4 REMARK 620 3 GLU A 119 OE2 166.9 89.2 REMARK 620 4 ILE A 120 O 76.8 87.2 92.3 REMARK 620 5 YAD A 201 O01 114.5 112.9 72.7 154.1 REMARK 620 6 YAD A 201 O08 84.8 162.3 85.6 76.1 81.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 204 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 89.1 REMARK 620 3 YAD A 201 O01 131.9 89.3 REMARK 620 4 YAD A 201 O25 116.5 152.3 66.1 REMARK 620 5 HOH A 302 O 160.3 85.1 66.9 74.0 REMARK 620 6 HOH A 303 O 84.4 87.3 143.4 104.7 76.5 REMARK 620 N 1 2 3 4 5 DBREF 7LP8 A 1 50 UNP C6H0Y9 C6H0Y9_9INFA 1 50 DBREF 7LP8 A 73 196 UNP C6H0Y9 C6H0Y9_9INFA 73 196 SEQADV 7LP8 MET A -19 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 GLY A -18 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 SER A -17 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 SER A -16 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 HIS A -15 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 HIS A -14 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 HIS A -13 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 HIS A -12 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 HIS A -11 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 HIS A -10 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 SER A -9 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 SER A -8 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 GLY A -7 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 LEU A -6 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 VAL A -5 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 PRO A -4 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 ARG A -3 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 GLY A -2 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 SER A -1 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 HIS A 0 UNP C6H0Y9 EXPRESSION TAG SEQADV 7LP8 THR A 38 UNP C6H0Y9 ILE 38 ENGINEERED MUTATION SEQADV 7LP8 GLY A 51 UNP C6H0Y9 LINKER SEQADV 7LP8 GLY A 52 UNP C6H0Y9 LINKER SEQADV 7LP8 SER A 53 UNP C6H0Y9 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET YAD A 201 27 HET QQ4 A 202 41 HET MN A 203 1 HET MN A 204 1 HET SO4 A 205 5 HETNAM YAD (PHENYLMETHYL) (2~{S})-2-[5-OXIDANYL-6-OXIDANYLIDENE-4- HETNAM 2 YAD (2-PYRIDIN-4-YLETHYLCARBAMOYL)-1~{H}-PYRIMIDIN-2- HETNAM 3 YAD YL]PYRROLIDINE-1-CARBOXYLATE HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 YAD C24 H25 N5 O5 FORMUL 3 QQ4 C36 H56 N6 O6 FORMUL 4 MN 2(MN 2+) FORMUL 6 SO4 O4 S 2- FORMUL 7 HOH *30(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 52 1 22 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLU A 195 1 9 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 THR A 143 SER A 149 1 O HIS A 144 N PHE A 117 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 203 1555 1555 2.24 LINK OE1 GLU A 80 MN MN A 204 1555 1555 2.03 LINK OD2 ASP A 108 MN MN A 203 1555 1555 2.10 LINK OD1 ASP A 108 MN MN A 204 1555 1555 2.10 LINK OE2 GLU A 119 MN MN A 203 1555 1555 2.01 LINK O ILE A 120 MN MN A 203 1555 1555 2.12 LINK O01 YAD A 201 MN MN A 203 1555 1555 2.02 LINK O08 YAD A 201 MN MN A 203 1555 1555 2.25 LINK O01 YAD A 201 MN MN A 204 1555 1555 2.60 LINK O25 YAD A 201 MN MN A 204 1555 1555 2.42 LINK MN MN A 204 O HOH A 302 1555 1555 2.34 LINK MN MN A 204 O HOH A 303 1555 1555 2.43 CRYST1 89.877 89.877 132.604 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011126 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007541 0.00000