HEADER LYASE/DNA 11-FEB-21 7LPI TITLE APE1 PHOSPHOROTHIOATE SUBSTRATE COMPLEX WITH ABASIC RIBONUCLEOTIDE DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE; COMPND 3 CHAIN: B, D; COMPND 4 SYNONYM: APEX1, APEX NUCLEASE,APEN,APURINIC-APYRIMIDINIC ENDONUCLEASE COMPND 5 1, APE-1, REF-1, REDOX FACTOR-1; COMPND 6 EC: 3.1.-.-, 4.2.99.18; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'- COMPND 11 D(*GP*GP*AP*TP*CP*CP*GP*TP*CP*GP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)- COMPND 12 3'); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-R(P*(YA4))- COMPND 17 D(P*CP*GP*AP*CP*GP*GP*AP*TP*CP*C)-3'); COMPND 18 CHAIN: E; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: APEX1, APE, APE1, APEX, APX, HAP1, REF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS DNA REPAIR, ABASIC RIBONUCLEOTIDE, AP-ENDONUCLEASE, LYASE, LYASE-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.D.FREUDENTHAL,N.M.HOITSMA REVDAT 2 18-OCT-23 7LPI 1 REMARK REVDAT 1 04-AUG-21 7LPI 0 JRNL AUTH N.M.HOITSMA,T.H.CLICK,P.K.AGARWAL,B.D.FREUDENTHAL JRNL TITL ALTERED APE1 ACTIVITY ON ABASIC RIBONUCLEOTIDES IS MEDIATED JRNL TITL 2 BY CHANGES IN THE NUCLEOSIDE SUGAR PUCKER. JRNL REF COMPUT STRUCT BIOTECHNOL J V. 19 3293 2021 JRNL REFN ESSN 2001-0370 JRNL PMID 34188778 JRNL DOI 10.1016/J.CSBJ.2021.05.035 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 61.3 REMARK 3 NUMBER OF REFLECTIONS : 57272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 2794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.4600 - 5.5400 0.90 3972 206 0.1452 0.1896 REMARK 3 2 5.5400 - 4.4000 0.94 4239 220 0.1419 0.2050 REMARK 3 3 4.4000 - 3.8500 0.95 4206 213 0.1493 0.1838 REMARK 3 4 3.8500 - 3.5000 0.94 4211 217 0.1703 0.2441 REMARK 3 5 3.5000 - 3.2500 0.92 4118 217 0.1810 0.2139 REMARK 3 6 3.2500 - 3.0600 0.83 3653 193 0.2211 0.2808 REMARK 3 7 3.0600 - 2.9000 0.75 3387 174 0.2676 0.2997 REMARK 3 8 2.9000 - 2.7800 0.71 3129 156 0.2584 0.3286 REMARK 3 9 2.7800 - 2.6700 0.65 2928 146 0.2623 0.3305 REMARK 3 10 2.6700 - 2.5800 0.62 2729 140 0.2695 0.2628 REMARK 3 11 2.5800 - 2.5000 0.59 2604 131 0.2688 0.2893 REMARK 3 12 2.5000 - 2.4300 0.55 2480 127 0.2802 0.3245 REMARK 3 13 2.4300 - 2.3600 0.50 2210 114 0.2812 0.3142 REMARK 3 14 2.3600 - 2.3100 0.45 2020 100 0.2904 0.3166 REMARK 3 15 2.3100 - 2.2500 0.42 1839 95 0.2816 0.3120 REMARK 3 16 2.2500 - 2.2000 0.37 1627 84 0.2883 0.2674 REMARK 3 17 2.2000 - 2.1600 0.34 1556 78 0.2857 0.3491 REMARK 3 18 2.1600 - 2.1200 0.30 1312 67 0.2828 0.4610 REMARK 3 19 2.1200 - 2.0800 0.27 1201 61 0.2825 0.3187 REMARK 3 20 2.0800 - 2.0500 0.24 1057 55 0.2904 0.4496 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.283 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.865 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5391 REMARK 3 ANGLE : 1.248 7481 REMARK 3 CHIRALITY : 0.086 801 REMARK 3 PLANARITY : 0.006 817 REMARK 3 DIHEDRAL : 26.813 2087 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254799. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57272 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.17.1_3660 REMARK 200 STARTING MODEL: 5DFF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRI-SODIUM CITRATE (PH 4), 100 REMARK 280 MM NACL, 10% PEG 6,000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 150 REMARK 465 HIS B 151 REMARK 465 ASP B 152 REMARK 465 GLU D 149 REMARK 465 GLU D 150 REMARK 465 HIS D 151 REMARK 465 ASP D 152 REMARK 465 GLN D 153 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 124 CG OD1 OD2 REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 GLU D 126 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 12 O3' DG C 12 C3' -0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT E 3 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 45 148.32 79.91 REMARK 500 LYS B 79 20.58 80.75 REMARK 500 LEU B 111 78.32 -112.95 REMARK 500 SER B 129 -141.47 44.97 REMARK 500 ASP B 148 -81.92 -98.58 REMARK 500 PHE B 162 -167.41 -105.20 REMARK 500 LEU B 199 -53.03 -158.03 REMARK 500 ARG B 202 -86.29 -91.61 REMARK 500 ASN B 222 66.29 -119.70 REMARK 500 ASN B 226 -4.68 -140.20 REMARK 500 LYS B 227 -0.11 -57.95 REMARK 500 PHE B 232 12.47 -140.81 REMARK 500 MET B 271 -141.75 50.49 REMARK 500 ASP D 70 62.95 39.86 REMARK 500 CYS D 99 126.06 -172.69 REMARK 500 ASP D 124 -68.12 -90.64 REMARK 500 SER D 129 -151.57 53.42 REMARK 500 LEU D 199 -43.69 -133.36 REMARK 500 ARG D 202 -79.76 -114.58 REMARK 500 ASN D 222 68.99 -112.72 REMARK 500 PHE D 232 24.25 -141.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 7LPI B 43 318 UNP P27695 APEX1_HUMAN 43 318 DBREF 7LPI C 1 21 PDB 7LPI 7LPI 1 21 DBREF 7LPI D 43 318 UNP P27695 APEX1_HUMAN 43 318 DBREF 7LPI E 1 21 PDB 7LPI 7LPI 1 21 SEQADV 7LPI ALA B 138 UNP P27695 CYS 138 ENGINEERED MUTATION SEQADV 7LPI ALA D 138 UNP P27695 CYS 138 ENGINEERED MUTATION SEQRES 1 B 276 ALA LEU TYR GLU ASP PRO PRO ASP GLN LYS THR SER PRO SEQRES 2 B 276 SER GLY LYS PRO ALA THR LEU LYS ILE CYS SER TRP ASN SEQRES 3 B 276 VAL ASP GLY LEU ARG ALA TRP ILE LYS LYS LYS GLY LEU SEQRES 4 B 276 ASP TRP VAL LYS GLU GLU ALA PRO ASP ILE LEU CYS LEU SEQRES 5 B 276 GLN GLU THR LYS CYS SER GLU ASN LYS LEU PRO ALA GLU SEQRES 6 B 276 LEU GLN GLU LEU PRO GLY LEU SER HIS GLN TYR TRP SER SEQRES 7 B 276 ALA PRO SER ASP LYS GLU GLY TYR SER GLY VAL GLY LEU SEQRES 8 B 276 LEU SER ARG GLN ALA PRO LEU LYS VAL SER TYR GLY ILE SEQRES 9 B 276 GLY ASP GLU GLU HIS ASP GLN GLU GLY ARG VAL ILE VAL SEQRES 10 B 276 ALA GLU PHE ASP SER PHE VAL LEU VAL THR ALA TYR VAL SEQRES 11 B 276 PRO ASN ALA GLY ARG GLY LEU VAL ARG LEU GLU TYR ARG SEQRES 12 B 276 GLN ARG TRP ASP GLU ALA PHE ARG LYS PHE LEU LYS GLY SEQRES 13 B 276 LEU ALA SER ARG LYS PRO LEU VAL LEU CYS GLY ASP LEU SEQRES 14 B 276 ASN VAL ALA HIS GLU GLU ILE ASP LEU ARG ASN PRO LYS SEQRES 15 B 276 GLY ASN LYS LYS ASN ALA GLY PHE THR PRO GLN GLU ARG SEQRES 16 B 276 GLN GLY PHE GLY GLU LEU LEU GLN ALA VAL PRO LEU ALA SEQRES 17 B 276 ASP SER PHE ARG HIS LEU TYR PRO ASN THR PRO TYR ALA SEQRES 18 B 276 TYR THR PHE TRP THR TYR MET MET ASN ALA ARG SER LYS SEQRES 19 B 276 ASN VAL GLY TRP ARG LEU ASP TYR PHE LEU LEU SER HIS SEQRES 20 B 276 SER LEU LEU PRO ALA LEU CYS ASP SER LYS ILE ARG SER SEQRES 21 B 276 LYS ALA LEU GLY SER ASP HIS CYS PRO ILE THR LEU TYR SEQRES 22 B 276 LEU ALA LEU SEQRES 1 C 21 DG DG DA DT DC DC DG DT DC DG DA DG DC SEQRES 2 C 21 DG DC DA DT DC DA DG DC SEQRES 1 D 276 ALA LEU TYR GLU ASP PRO PRO ASP GLN LYS THR SER PRO SEQRES 2 D 276 SER GLY LYS PRO ALA THR LEU LYS ILE CYS SER TRP ASN SEQRES 3 D 276 VAL ASP GLY LEU ARG ALA TRP ILE LYS LYS LYS GLY LEU SEQRES 4 D 276 ASP TRP VAL LYS GLU GLU ALA PRO ASP ILE LEU CYS LEU SEQRES 5 D 276 GLN GLU THR LYS CYS SER GLU ASN LYS LEU PRO ALA GLU SEQRES 6 D 276 LEU GLN GLU LEU PRO GLY LEU SER HIS GLN TYR TRP SER SEQRES 7 D 276 ALA PRO SER ASP LYS GLU GLY TYR SER GLY VAL GLY LEU SEQRES 8 D 276 LEU SER ARG GLN ALA PRO LEU LYS VAL SER TYR GLY ILE SEQRES 9 D 276 GLY ASP GLU GLU HIS ASP GLN GLU GLY ARG VAL ILE VAL SEQRES 10 D 276 ALA GLU PHE ASP SER PHE VAL LEU VAL THR ALA TYR VAL SEQRES 11 D 276 PRO ASN ALA GLY ARG GLY LEU VAL ARG LEU GLU TYR ARG SEQRES 12 D 276 GLN ARG TRP ASP GLU ALA PHE ARG LYS PHE LEU LYS GLY SEQRES 13 D 276 LEU ALA SER ARG LYS PRO LEU VAL LEU CYS GLY ASP LEU SEQRES 14 D 276 ASN VAL ALA HIS GLU GLU ILE ASP LEU ARG ASN PRO LYS SEQRES 15 D 276 GLY ASN LYS LYS ASN ALA GLY PHE THR PRO GLN GLU ARG SEQRES 16 D 276 GLN GLY PHE GLY GLU LEU LEU GLN ALA VAL PRO LEU ALA SEQRES 17 D 276 ASP SER PHE ARG HIS LEU TYR PRO ASN THR PRO TYR ALA SEQRES 18 D 276 TYR THR PHE TRP THR TYR MET MET ASN ALA ARG SER LYS SEQRES 19 D 276 ASN VAL GLY TRP ARG LEU ASP TYR PHE LEU LEU SER HIS SEQRES 20 D 276 SER LEU LEU PRO ALA LEU CYS ASP SER LYS ILE ARG SER SEQRES 21 D 276 LYS ALA LEU GLY SER ASP HIS CYS PRO ILE THR LEU TYR SEQRES 22 D 276 LEU ALA LEU SEQRES 1 E 21 DG DC DT DG DA DT DG DC DG DC YA4 DC DG SEQRES 2 E 21 DA DC DG DG DA DT DC DC HET YA4 E 11 24 HETNAM YA4 [(2~{R},3~{S},4~{S})-3,4-BIS(OXIDANYL)OXOLAN-2- HETNAM 2 YA4 YL]METHOXY-SULFANYL-PHOSPHINIC ACID FORMUL 4 YA4 C5 H11 O6 P S FORMUL 5 HOH *190(H2 O) HELIX 1 AA1 GLY B 71 LYS B 78 1 8 HELIX 2 AA2 LYS B 79 ALA B 88 1 10 HELIX 3 AA3 SER B 100 LEU B 104 5 5 HELIX 4 AA4 PRO B 105 SER B 115 5 11 HELIX 5 AA5 GLY B 176 VAL B 180 5 5 HELIX 6 AA6 ARG B 181 GLY B 198 1 18 HELIX 7 AA7 GLU B 216 LEU B 220 5 5 HELIX 8 AA8 PRO B 223 LYS B 227 5 5 HELIX 9 AA9 THR B 233 VAL B 247 1 15 HELIX 10 AB1 SER B 252 TYR B 257 1 6 HELIX 11 AB2 HIS B 289 PRO B 293 5 5 HELIX 12 AB3 GLY D 71 LYS D 78 1 8 HELIX 13 AB4 LYS D 79 ALA D 88 1 10 HELIX 14 AB5 SER D 100 LEU D 104 5 5 HELIX 15 AB6 PRO D 105 LEU D 111 5 7 HELIX 16 AB7 GLY D 176 VAL D 180 5 5 HELIX 17 AB8 ARG D 181 SER D 201 1 21 HELIX 18 AB9 GLU D 216 LEU D 220 5 5 HELIX 19 AC1 PRO D 223 LYS D 227 5 5 HELIX 20 AC2 THR D 233 VAL D 247 1 15 HELIX 21 AC3 SER D 252 TYR D 257 1 6 HELIX 22 AC4 TYR D 269 MET D 271 5 3 HELIX 23 AC5 ASN D 272 ASN D 277 1 6 HELIX 24 AC6 HIS D 289 PRO D 293 5 5 SHEET 1 AA1 6 HIS B 116 SER B 120 0 SHEET 2 AA1 6 VAL B 131 SER B 135 -1 O SER B 135 N HIS B 116 SHEET 3 AA1 6 ILE B 91 GLN B 95 -1 N LEU B 92 O LEU B 134 SHEET 4 AA1 6 LEU B 62 ASN B 68 1 N CYS B 65 O CYS B 93 SHEET 5 AA1 6 ILE B 312 LEU B 316 -1 O LEU B 314 N ILE B 64 SHEET 6 AA1 6 LEU B 295 ILE B 300 -1 N LYS B 299 O THR B 313 SHEET 1 AA2 6 LYS B 141 TYR B 144 0 SHEET 2 AA2 6 VAL B 157 GLU B 161 -1 O VAL B 159 N SER B 143 SHEET 3 AA2 6 VAL B 166 TYR B 171 -1 O LEU B 167 N ALA B 160 SHEET 4 AA2 6 LEU B 205 ASP B 210 1 O VAL B 206 N VAL B 166 SHEET 5 AA2 6 ASP B 283 LEU B 287 -1 O LEU B 286 N LEU B 207 SHEET 6 AA2 6 ALA B 250 ASP B 251 -1 N ALA B 250 O LEU B 287 SHEET 1 AA3 6 HIS D 116 SER D 120 0 SHEET 2 AA3 6 VAL D 131 SER D 135 -1 O VAL D 131 N SER D 120 SHEET 3 AA3 6 ILE D 91 GLN D 95 -1 N LEU D 92 O LEU D 134 SHEET 4 AA3 6 LEU D 62 ASN D 68 1 N TRP D 67 O CYS D 93 SHEET 5 AA3 6 ILE D 312 LEU D 316 -1 O LEU D 314 N ILE D 64 SHEET 6 AA3 6 LEU D 295 ILE D 300 -1 N LYS D 299 O THR D 313 SHEET 1 AA4 6 LYS D 141 TYR D 144 0 SHEET 2 AA4 6 VAL D 157 GLU D 161 -1 O VAL D 159 N SER D 143 SHEET 3 AA4 6 VAL D 166 TYR D 171 -1 O LEU D 167 N ALA D 160 SHEET 4 AA4 6 LEU D 205 ASP D 210 1 O CYS D 208 N VAL D 168 SHEET 5 AA4 6 ASP D 283 LEU D 287 -1 O LEU D 286 N LEU D 207 SHEET 6 AA4 6 ALA D 250 ASP D 251 -1 N ALA D 250 O LEU D 287 LINK O3' DC E 10 P AYA4 E 11 1555 1555 1.58 LINK O3' DC E 10 P BYA4 E 11 1555 1555 1.64 LINK O3'AYA4 E 11 P DC E 12 1555 1555 1.62 LINK O3'BYA4 E 11 P DC E 12 1555 1555 1.58 CISPEP 1 VAL B 247 PRO B 248 0 -8.55 CISPEP 2 VAL D 247 PRO D 248 0 -4.54 CRYST1 44.227 60.883 73.208 83.64 77.97 87.12 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022611 -0.001136 -0.004727 0.00000 SCALE2 0.000000 0.016446 -0.001698 0.00000 SCALE3 0.000000 0.000000 0.014041 0.00000