HEADER PROTEIN FIBRIL 13-FEB-21 7LQ5 TITLE CRYO-EM STRUCTURE OF OMCZ NANOWIRE FROM GEOBACTER SULFURREDUCENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: OMCZ NANOWIRE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS PCA; SOURCE 3 ORGANISM_TAXID: 243231; SOURCE 4 STRAIN: ATCC 51573 / DSM 12127 / PCA; SOURCE 5 ATCC: 51573 KEYWDS NANOWIRES, PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR Y.GU,V.SRIKANTH,N.S.MALVANKAR,F.A.SAMATEY REVDAT 2 02-AUG-23 7LQ5 1 JRNL REVDAT 1 24-AUG-22 7LQ5 0 JRNL AUTH Y.GU,M.J.GUBERMAN-PFEFFER,V.SRIKANTH,C.SHEN,F.GISKA,K.GUPTA, JRNL AUTH 2 Y.LONDER,F.A.SAMATEY,V.S.BATISTA,N.S.MALVANKAR JRNL TITL STRUCTURE OF GEOBACTER CYTOCHROME OMCZ IDENTIFIES MECHANISM JRNL TITL 2 OF NANOWIRE ASSEMBLY AND CONDUCTIVITY. JRNL REF NAT MICROBIOL V. 8 284 2023 JRNL REFN ESSN 2058-5276 JRNL PMID 36732469 JRNL DOI 10.1038/S41564-022-01315-5 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, GCTF, UCSF CHIMERA, RELION, REMARK 3 RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : CORRELATION COEFFICIENT REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : INITIAL FITTING WAS DONE WITH CHIMERA AND REMARK 3 REFINEMENT WAS DONE IN PHENIX REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.400 REMARK 3 NUMBER OF PARTICLES : 128409 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7LQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254821. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : POLYMERIZED CYTOCHROME OMCZ REMARK 245 FROM GEOBACTER SULFURREDUCENS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 10.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 14508 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 120.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 248 CAB HEC B 308 1.33 REMARK 500 SG CYS C 248 CAB HEC C 308 1.33 REMARK 500 SG CYS A 248 CAB HEC A 308 1.33 REMARK 500 CB CYS C 53 CAB HEC C 302 1.96 REMARK 500 CB CYS A 53 CAB HEC A 302 1.96 REMARK 500 CB CYS B 53 CAB HEC B 302 1.96 REMARK 500 SG CYS B 110 C3C HEC B 304 2.10 REMARK 500 SG CYS C 110 C3C HEC C 304 2.10 REMARK 500 SG CYS A 110 C3C HEC A 304 2.10 REMARK 500 SG CYS B 53 CBB HEC B 302 2.15 REMARK 500 SG CYS A 53 CBB HEC A 302 2.15 REMARK 500 SG CYS C 53 CBB HEC C 302 2.15 REMARK 500 SG CYS B 248 CBB HEC B 308 2.16 REMARK 500 SG CYS A 248 CBB HEC A 308 2.16 REMARK 500 SG CYS C 248 CBB HEC C 308 2.16 REMARK 500 SG CYS C 190 C3B HEC C 306 2.17 REMARK 500 SG CYS B 190 C3B HEC B 306 2.17 REMARK 500 SG CYS A 190 C3B HEC A 306 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 8 109.45 -52.02 REMARK 500 THR A 92 25.70 49.62 REMARK 500 HIS A 97 -0.72 69.12 REMARK 500 ASP A 106 55.03 -91.49 REMARK 500 SER A 137 -6.49 70.88 REMARK 500 ILE A 165 -64.59 -125.77 REMARK 500 PRO A 167 -168.46 -74.42 REMARK 500 ASP A 180 -29.29 -140.07 REMARK 500 SER A 198 -12.14 69.13 REMARK 500 HIS A 209 41.20 -141.29 REMARK 500 ALA A 224 30.40 -143.78 REMARK 500 ALA A 225 11.98 56.89 REMARK 500 PHE A 256 37.90 -141.29 REMARK 500 ASN B 8 109.46 -52.03 REMARK 500 THR B 92 25.66 49.66 REMARK 500 HIS B 97 -0.69 69.07 REMARK 500 ASP B 106 55.01 -91.48 REMARK 500 SER B 137 -6.46 70.86 REMARK 500 ILE B 165 -64.61 -125.80 REMARK 500 PRO B 167 -168.43 -74.47 REMARK 500 ASP B 180 -29.28 -140.12 REMARK 500 SER B 198 -12.20 69.17 REMARK 500 HIS B 209 41.16 -141.29 REMARK 500 ALA B 224 30.40 -143.75 REMARK 500 ALA B 225 11.96 56.88 REMARK 500 PHE B 256 37.88 -141.30 REMARK 500 ASN C 8 109.40 -52.01 REMARK 500 THR C 92 25.70 49.62 REMARK 500 HIS C 97 -0.73 69.11 REMARK 500 ASP C 106 55.05 -91.46 REMARK 500 SER C 137 -6.53 70.88 REMARK 500 ILE C 165 -64.61 -125.74 REMARK 500 PRO C 167 -168.44 -74.40 REMARK 500 ASP C 180 -29.28 -140.07 REMARK 500 SER C 198 -12.06 69.07 REMARK 500 HIS C 209 41.26 -141.30 REMARK 500 ALA C 224 30.43 -143.81 REMARK 500 ALA C 225 12.01 56.93 REMARK 500 PHE C 256 37.85 -141.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 30 NE2 REMARK 620 2 HEC A 301 NA 90.7 REMARK 620 3 HEC A 301 NB 87.4 87.0 REMARK 620 4 HEC A 301 NC 85.2 175.9 92.8 REMARK 620 5 HEC A 301 ND 87.7 93.9 175.1 85.9 REMARK 620 6 HIS A 96 NE2 178.3 87.6 92.9 96.4 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 303 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 40 NE2 REMARK 620 2 HEC A 303 NA 86.2 REMARK 620 3 HEC A 303 NB 83.0 88.0 REMARK 620 4 HEC A 303 NC 92.5 178.6 91.2 REMARK 620 5 HEC A 303 ND 96.8 94.7 177.3 86.0 REMARK 620 6 HIS A 91 NE2 162.4 104.6 83.6 76.5 96.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 HEC A 302 NA 79.4 REMARK 620 3 HEC A 302 NB 82.0 88.1 REMARK 620 4 HEC A 302 NC 101.9 175.9 88.2 REMARK 620 5 HEC A 302 ND 99.4 92.4 178.6 91.2 REMARK 620 6 HIS A 69 NE2 158.3 83.5 84.2 94.3 94.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 304 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 97 NE2 REMARK 620 2 HEC A 304 NA 86.7 REMARK 620 3 HEC A 304 NB 97.8 86.8 REMARK 620 4 HEC A 304 NC 98.0 174.6 90.0 REMARK 620 5 HEC A 304 ND 84.8 91.0 176.4 92.0 REMARK 620 6 HIS A 111 NE2 163.4 78.2 88.1 97.4 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 158 NE2 REMARK 620 2 HEC A 305 NA 92.5 REMARK 620 3 HEC A 305 NB 95.2 92.2 REMARK 620 4 HEC A 305 NC 88.8 178.3 88.7 REMARK 620 5 HEC A 305 ND 85.7 87.8 179.2 91.3 REMARK 620 6 HIS A 241 NE2 164.7 102.0 89.0 76.6 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 307 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 182 NE2 REMARK 620 2 HEC A 307 NA 82.4 REMARK 620 3 HEC A 307 NB 99.3 85.6 REMARK 620 4 HEC A 307 NC 96.0 175.8 90.9 REMARK 620 5 HEC A 307 ND 79.0 95.4 177.9 88.0 REMARK 620 6 HIS A 209 NE2 151.9 84.4 104.3 98.7 77.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 306 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 183 NE2 REMARK 620 2 HEC A 306 NA 97.7 REMARK 620 3 HEC A 306 NB 86.9 89.0 REMARK 620 4 HEC A 306 NC 79.0 176.7 90.0 REMARK 620 5 HEC A 306 ND 89.5 92.7 176.2 88.1 REMARK 620 6 HIS A 194 NE2 162.4 97.6 102.0 85.7 81.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 308 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 215 NE2 REMARK 620 2 HEC A 308 NA 95.5 REMARK 620 3 HEC A 308 NB 95.8 88.3 REMARK 620 4 HEC A 308 NC 87.9 176.5 91.9 REMARK 620 5 HEC A 308 ND 88.1 89.1 175.5 90.4 REMARK 620 6 HIS A 252 NE2 164.5 89.5 99.0 87.0 77.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 30 NE2 REMARK 620 2 HEC B 301 NA 90.7 REMARK 620 3 HEC B 301 NB 87.5 87.1 REMARK 620 4 HEC B 301 NC 85.2 175.9 92.8 REMARK 620 5 HEC B 301 ND 87.7 93.9 175.1 85.9 REMARK 620 6 HIS B 96 NE2 178.3 87.6 92.9 96.4 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 303 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 40 NE2 REMARK 620 2 HEC B 303 NA 86.2 REMARK 620 3 HEC B 303 NB 83.0 88.0 REMARK 620 4 HEC B 303 NC 92.5 178.6 91.3 REMARK 620 5 HEC B 303 ND 96.8 94.7 177.3 86.0 REMARK 620 6 HIS B 91 NE2 162.5 104.6 83.6 76.5 96.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 41 NE2 REMARK 620 2 HEC B 302 NA 79.4 REMARK 620 3 HEC B 302 NB 81.9 88.1 REMARK 620 4 HEC B 302 NC 101.9 175.9 88.2 REMARK 620 5 HEC B 302 ND 99.4 92.4 178.6 91.2 REMARK 620 6 HIS B 69 NE2 158.3 83.5 84.1 94.3 94.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 304 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 97 NE2 REMARK 620 2 HEC B 304 NA 86.7 REMARK 620 3 HEC B 304 NB 97.8 86.8 REMARK 620 4 HEC B 304 NC 98.0 174.7 90.0 REMARK 620 5 HEC B 304 ND 84.8 91.0 176.4 92.0 REMARK 620 6 HIS B 111 NE2 163.4 78.2 88.2 97.4 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 158 NE2 REMARK 620 2 HEC B 305 NA 92.5 REMARK 620 3 HEC B 305 NB 95.2 92.2 REMARK 620 4 HEC B 305 NC 88.8 178.3 88.7 REMARK 620 5 HEC B 305 ND 85.6 87.8 179.2 91.2 REMARK 620 6 HIS B 241 NE2 164.7 102.0 89.0 76.6 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 307 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 182 NE2 REMARK 620 2 HEC B 307 NA 82.4 REMARK 620 3 HEC B 307 NB 99.3 85.6 REMARK 620 4 HEC B 307 NC 96.0 175.9 90.9 REMARK 620 5 HEC B 307 ND 79.1 95.4 177.9 88.0 REMARK 620 6 HIS B 209 NE2 151.9 84.4 104.3 98.6 77.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 306 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 183 NE2 REMARK 620 2 HEC B 306 NA 97.8 REMARK 620 3 HEC B 306 NB 86.9 89.0 REMARK 620 4 HEC B 306 NC 79.0 176.7 90.0 REMARK 620 5 HEC B 306 ND 89.5 92.7 176.2 88.1 REMARK 620 6 HIS B 194 NE2 162.4 97.6 101.9 85.7 81.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B 308 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 215 NE2 REMARK 620 2 HEC B 308 NA 95.5 REMARK 620 3 HEC B 308 NB 95.8 88.3 REMARK 620 4 HEC B 308 NC 87.9 176.5 91.9 REMARK 620 5 HEC B 308 ND 88.1 89.1 175.5 90.4 REMARK 620 6 HIS B 252 NE2 164.5 89.5 99.0 87.0 77.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 30 NE2 REMARK 620 2 HEC C 301 NA 90.7 REMARK 620 3 HEC C 301 NB 87.4 87.0 REMARK 620 4 HEC C 301 NC 85.2 175.9 92.8 REMARK 620 5 HEC C 301 ND 87.7 93.9 175.1 85.9 REMARK 620 6 HIS C 96 NE2 178.3 87.7 92.9 96.4 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 303 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 40 NE2 REMARK 620 2 HEC C 303 NA 86.3 REMARK 620 3 HEC C 303 NB 83.0 88.1 REMARK 620 4 HEC C 303 NC 92.5 178.6 91.2 REMARK 620 5 HEC C 303 ND 96.8 94.7 177.2 86.0 REMARK 620 6 HIS C 91 NE2 162.5 104.6 83.6 76.5 96.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 41 NE2 REMARK 620 2 HEC C 302 NA 79.4 REMARK 620 3 HEC C 302 NB 82.0 88.1 REMARK 620 4 HEC C 302 NC 101.9 175.9 88.2 REMARK 620 5 HEC C 302 ND 99.4 92.4 178.6 91.2 REMARK 620 6 HIS C 69 NE2 158.3 83.5 84.2 94.3 94.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 304 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 97 NE2 REMARK 620 2 HEC C 304 NA 86.7 REMARK 620 3 HEC C 304 NB 97.8 86.8 REMARK 620 4 HEC C 304 NC 98.0 174.6 90.0 REMARK 620 5 HEC C 304 ND 84.9 91.0 176.4 92.0 REMARK 620 6 HIS C 111 NE2 163.4 78.2 88.2 97.4 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 158 NE2 REMARK 620 2 HEC C 305 NA 92.6 REMARK 620 3 HEC C 305 NB 95.2 92.2 REMARK 620 4 HEC C 305 NC 88.8 178.3 88.7 REMARK 620 5 HEC C 305 ND 85.7 87.8 179.1 91.3 REMARK 620 6 HIS C 241 NE2 164.7 102.0 89.0 76.6 90.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 307 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 182 NE2 REMARK 620 2 HEC C 307 NA 82.4 REMARK 620 3 HEC C 307 NB 99.3 85.5 REMARK 620 4 HEC C 307 NC 96.0 175.8 90.9 REMARK 620 5 HEC C 307 ND 79.0 95.4 177.9 88.0 REMARK 620 6 HIS C 209 NE2 151.9 84.4 104.3 98.7 77.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 306 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 183 NE2 REMARK 620 2 HEC C 306 NA 97.8 REMARK 620 3 HEC C 306 NB 86.9 89.0 REMARK 620 4 HEC C 306 NC 79.0 176.7 90.0 REMARK 620 5 HEC C 306 ND 89.5 92.7 176.2 88.1 REMARK 620 6 HIS C 194 NE2 162.4 97.6 102.0 85.7 81.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC C 308 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 215 NE2 REMARK 620 2 HEC C 308 NA 95.5 REMARK 620 3 HEC C 308 NB 95.8 88.3 REMARK 620 4 HEC C 308 NC 87.9 176.5 91.9 REMARK 620 5 HEC C 308 ND 88.1 89.1 175.5 90.4 REMARK 620 6 HIS C 252 NE2 164.5 89.5 99.0 87.0 77.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-23481 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF OMCZ NANOWIRE FROM GEOBACTER SULFURREDUCENS DBREF 7LQ5 A 1 258 UNP Q74BG5 Q74BG5_GEOSL 25 282 DBREF 7LQ5 B 1 258 UNP Q74BG5 Q74BG5_GEOSL 25 282 DBREF 7LQ5 C 1 258 UNP Q74BG5 Q74BG5_GEOSL 25 282 SEQRES 1 A 258 ALA VAL PRO PRO PRO PRO VAL ASN GLN PHE LEU GLY ILE SEQRES 2 A 258 TYR ASP THR LYS PHE PRO ASN LEU THR LYS ALA ASP CYS SEQRES 3 A 258 LEU GLU CYS HIS VAL SER ASP THR VAL LEU VAL GLN GLN SEQRES 4 A 258 HIS HIS ALA LEU ILE ASN THR VAL THR PRO PRO ALA SER SEQRES 5 A 258 CYS ILE ASN THR SER GLY THR VAL PRO PRO THR LEU ALA SEQRES 6 A 258 THR GLY CYS HIS VAL MET VAL PRO ASP GLY SER GLY GLY SEQRES 7 A 258 PHE THR PHE GLN ASP PHE ARG ASN CYS PHE ASN CYS HIS SEQRES 8 A 258 THR GLN THR PRO HIS HIS THR SER PRO ALA ALA VAL ALA SEQRES 9 A 258 LYS ASP CYS LYS TYR CYS HIS GLY ASN PHE ILE ASP ASN SEQRES 10 A 258 PRO LEU ASP GLY HIS TYR ILE PRO THR TYR SER ALA SER SEQRES 11 A 258 SER VAL THR PRO MET PRO SER GLY ARG SER VAL THR ALA SEQRES 12 A 258 THR ASP GLY ASN VAL VAL ILE VAL GLN GLY CYS GLU ALA SEQRES 13 A 258 CYS HIS GLN ALA ALA PRO ASN ALA ILE ASP PRO LYS THR SEQRES 14 A 258 ASN THR VAL ARG PRO ILE PHE SER ASN GLN ASP THR HIS SEQRES 15 A 258 HIS GLY THR GLY ILE THR ASP CYS ASN LEU CYS HIS ASN SEQRES 16 A 258 THR SER SER ASN VAL PRO ILE ARG GLN CYS GLU VAL CYS SEQRES 17 A 258 HIS GLY VAL ASN SER LEU HIS ASN ILE GLN LYS ASP SER SEQRES 18 A 258 PRO ASN ALA ALA ASN LEU GLY THR VAL LYS PRO GLY LEU SEQRES 19 A 258 GLU ASP LEU GLY TRP GLY HIS ILE GLY ASN ASN TRP ASP SEQRES 20 A 258 CYS GLN GLY CYS HIS TRP SER TRP PHE GLY ASN SEQRES 1 B 258 ALA VAL PRO PRO PRO PRO VAL ASN GLN PHE LEU GLY ILE SEQRES 2 B 258 TYR ASP THR LYS PHE PRO ASN LEU THR LYS ALA ASP CYS SEQRES 3 B 258 LEU GLU CYS HIS VAL SER ASP THR VAL LEU VAL GLN GLN SEQRES 4 B 258 HIS HIS ALA LEU ILE ASN THR VAL THR PRO PRO ALA SER SEQRES 5 B 258 CYS ILE ASN THR SER GLY THR VAL PRO PRO THR LEU ALA SEQRES 6 B 258 THR GLY CYS HIS VAL MET VAL PRO ASP GLY SER GLY GLY SEQRES 7 B 258 PHE THR PHE GLN ASP PHE ARG ASN CYS PHE ASN CYS HIS SEQRES 8 B 258 THR GLN THR PRO HIS HIS THR SER PRO ALA ALA VAL ALA SEQRES 9 B 258 LYS ASP CYS LYS TYR CYS HIS GLY ASN PHE ILE ASP ASN SEQRES 10 B 258 PRO LEU ASP GLY HIS TYR ILE PRO THR TYR SER ALA SER SEQRES 11 B 258 SER VAL THR PRO MET PRO SER GLY ARG SER VAL THR ALA SEQRES 12 B 258 THR ASP GLY ASN VAL VAL ILE VAL GLN GLY CYS GLU ALA SEQRES 13 B 258 CYS HIS GLN ALA ALA PRO ASN ALA ILE ASP PRO LYS THR SEQRES 14 B 258 ASN THR VAL ARG PRO ILE PHE SER ASN GLN ASP THR HIS SEQRES 15 B 258 HIS GLY THR GLY ILE THR ASP CYS ASN LEU CYS HIS ASN SEQRES 16 B 258 THR SER SER ASN VAL PRO ILE ARG GLN CYS GLU VAL CYS SEQRES 17 B 258 HIS GLY VAL ASN SER LEU HIS ASN ILE GLN LYS ASP SER SEQRES 18 B 258 PRO ASN ALA ALA ASN LEU GLY THR VAL LYS PRO GLY LEU SEQRES 19 B 258 GLU ASP LEU GLY TRP GLY HIS ILE GLY ASN ASN TRP ASP SEQRES 20 B 258 CYS GLN GLY CYS HIS TRP SER TRP PHE GLY ASN SEQRES 1 C 258 ALA VAL PRO PRO PRO PRO VAL ASN GLN PHE LEU GLY ILE SEQRES 2 C 258 TYR ASP THR LYS PHE PRO ASN LEU THR LYS ALA ASP CYS SEQRES 3 C 258 LEU GLU CYS HIS VAL SER ASP THR VAL LEU VAL GLN GLN SEQRES 4 C 258 HIS HIS ALA LEU ILE ASN THR VAL THR PRO PRO ALA SER SEQRES 5 C 258 CYS ILE ASN THR SER GLY THR VAL PRO PRO THR LEU ALA SEQRES 6 C 258 THR GLY CYS HIS VAL MET VAL PRO ASP GLY SER GLY GLY SEQRES 7 C 258 PHE THR PHE GLN ASP PHE ARG ASN CYS PHE ASN CYS HIS SEQRES 8 C 258 THR GLN THR PRO HIS HIS THR SER PRO ALA ALA VAL ALA SEQRES 9 C 258 LYS ASP CYS LYS TYR CYS HIS GLY ASN PHE ILE ASP ASN SEQRES 10 C 258 PRO LEU ASP GLY HIS TYR ILE PRO THR TYR SER ALA SER SEQRES 11 C 258 SER VAL THR PRO MET PRO SER GLY ARG SER VAL THR ALA SEQRES 12 C 258 THR ASP GLY ASN VAL VAL ILE VAL GLN GLY CYS GLU ALA SEQRES 13 C 258 CYS HIS GLN ALA ALA PRO ASN ALA ILE ASP PRO LYS THR SEQRES 14 C 258 ASN THR VAL ARG PRO ILE PHE SER ASN GLN ASP THR HIS SEQRES 15 C 258 HIS GLY THR GLY ILE THR ASP CYS ASN LEU CYS HIS ASN SEQRES 16 C 258 THR SER SER ASN VAL PRO ILE ARG GLN CYS GLU VAL CYS SEQRES 17 C 258 HIS GLY VAL ASN SER LEU HIS ASN ILE GLN LYS ASP SER SEQRES 18 C 258 PRO ASN ALA ALA ASN LEU GLY THR VAL LYS PRO GLY LEU SEQRES 19 C 258 GLU ASP LEU GLY TRP GLY HIS ILE GLY ASN ASN TRP ASP SEQRES 20 C 258 CYS GLN GLY CYS HIS TRP SER TRP PHE GLY ASN HET HEC A 301 43 HET HEC A 302 43 HET HEC A 303 43 HET HEC A 304 43 HET HEC A 305 43 HET HEC A 306 43 HET HEC A 307 43 HET HEC A 308 43 HET HEC B 301 43 HET HEC B 302 43 HET HEC B 303 43 HET HEC B 304 43 HET HEC B 305 43 HET HEC B 306 43 HET HEC B 307 43 HET HEC B 308 43 HET HEC C 301 43 HET HEC C 302 43 HET HEC C 303 43 HET HEC C 304 43 HET HEC C 305 43 HET HEC C 306 43 HET HEC C 307 43 HET HEC C 308 43 HETNAM HEC HEME C FORMUL 4 HEC 24(C34 H34 FE N4 O4) HELIX 1 AA1 PHE A 18 THR A 22 5 5 HELIX 2 AA2 SER A 32 ALA A 42 1 11 HELIX 3 AA3 LEU A 43 THR A 46 5 4 HELIX 4 AA4 GLY A 153 CYS A 157 5 5 HELIX 5 AA5 ASP A 189 HIS A 194 1 6 HELIX 6 AA6 GLY A 210 HIS A 215 1 6 HELIX 7 AA7 ASN A 244 HIS A 252 1 9 HELIX 8 AA8 PHE B 18 THR B 22 5 5 HELIX 9 AA9 SER B 32 ALA B 42 1 11 HELIX 10 AB1 LEU B 43 THR B 46 5 4 HELIX 11 AB2 GLY B 153 CYS B 157 5 5 HELIX 12 AB3 ASP B 189 HIS B 194 1 6 HELIX 13 AB4 GLY B 210 HIS B 215 1 6 HELIX 14 AB5 ASN B 244 HIS B 252 1 9 HELIX 15 AB6 PHE C 18 THR C 22 5 5 HELIX 16 AB7 SER C 32 ALA C 42 1 11 HELIX 17 AB8 LEU C 43 THR C 46 5 4 HELIX 18 AB9 GLY C 153 CYS C 157 5 5 HELIX 19 AC1 ASP C 189 HIS C 194 1 6 HELIX 20 AC2 GLY C 210 HIS C 215 1 6 HELIX 21 AC3 ASN C 244 HIS C 252 1 9 SHEET 1 AA1 2 MET A 71 ASP A 74 0 SHEET 2 AA1 2 GLY A 77 PHE A 81 -1 O GLY A 77 N ASP A 74 SHEET 1 AA2 2 ARG A 139 THR A 142 0 SHEET 2 AA2 2 VAL A 148 VAL A 151 -1 O VAL A 151 N ARG A 139 SHEET 1 AA3 2 MET B 71 ASP B 74 0 SHEET 2 AA3 2 GLY B 77 PHE B 81 -1 O GLY B 77 N ASP B 74 SHEET 1 AA4 2 ARG B 139 THR B 142 0 SHEET 2 AA4 2 VAL B 148 VAL B 151 -1 O VAL B 151 N ARG B 139 SHEET 1 AA5 2 MET C 71 ASP C 74 0 SHEET 2 AA5 2 GLY C 77 PHE C 81 -1 O GLY C 77 N ASP C 74 SHEET 1 AA6 2 ARG C 139 THR C 142 0 SHEET 2 AA6 2 VAL C 148 VAL C 151 -1 O VAL C 151 N ARG C 139 LINK SG CYS A 26 CAB HEC A 301 1555 1555 1.81 LINK SG CYS A 29 CAC HEC A 301 1555 1555 1.81 LINK SG CYS A 53 CAB HEC A 302 1555 1555 1.79 LINK SG CYS A 68 CAC HEC A 302 1555 1555 1.77 LINK SG CYS A 87 CAB HEC A 303 1555 1555 1.80 LINK SG CYS A 90 CAC HEC A 303 1555 1555 1.83 LINK SG CYS A 107 CAB HEC A 304 1555 1555 1.83 LINK SG CYS A 110 CAC HEC A 304 1555 1555 1.88 LINK SG CYS A 154 CAB HEC A 305 1555 1555 1.79 LINK SG CYS A 157 C3C HEC A 305 1555 1555 1.93 LINK SG CYS A 157 CAC HEC A 305 1555 1555 1.84 LINK SG CYS A 190 CAB HEC A 306 1555 1555 1.84 LINK SG CYS A 193 CAC HEC A 306 1555 1555 1.80 LINK SG CYS A 205 CAB HEC A 307 1555 1555 1.85 LINK SG CYS A 208 CAC HEC A 307 1555 1555 1.85 LINK SG CYS A 251 CAC HEC A 308 1555 1555 1.85 LINK SG CYS B 26 CAB HEC B 301 1555 1555 1.81 LINK SG CYS B 29 CAC HEC B 301 1555 1555 1.81 LINK SG CYS B 53 CAB HEC B 302 1555 1555 1.79 LINK SG CYS B 68 CAC HEC B 302 1555 1555 1.77 LINK SG CYS B 87 CAB HEC B 303 1555 1555 1.80 LINK SG CYS B 90 CAC HEC B 303 1555 1555 1.83 LINK SG CYS B 107 CAB HEC B 304 1555 1555 1.83 LINK SG CYS B 110 CAC HEC B 304 1555 1555 1.88 LINK SG CYS B 154 CAB HEC B 305 1555 1555 1.79 LINK SG CYS B 157 C3C HEC B 305 1555 1555 1.93 LINK SG CYS B 157 CAC HEC B 305 1555 1555 1.85 LINK SG CYS B 190 CAB HEC B 306 1555 1555 1.84 LINK SG CYS B 193 CAC HEC B 306 1555 1555 1.80 LINK SG CYS B 205 CAB HEC B 307 1555 1555 1.85 LINK SG CYS B 208 CAC HEC B 307 1555 1555 1.85 LINK SG CYS B 251 CAC HEC B 308 1555 1555 1.85 LINK SG CYS C 26 CAB HEC C 301 1555 1555 1.81 LINK SG CYS C 29 CAC HEC C 301 1555 1555 1.82 LINK SG CYS C 53 CAB HEC C 302 1555 1555 1.79 LINK SG CYS C 68 CAC HEC C 302 1555 1555 1.77 LINK SG CYS C 87 CAB HEC C 303 1555 1555 1.80 LINK SG CYS C 90 CAC HEC C 303 1555 1555 1.83 LINK SG CYS C 107 CAB HEC C 304 1555 1555 1.83 LINK SG CYS C 110 CAC HEC C 304 1555 1555 1.88 LINK SG CYS C 154 CAB HEC C 305 1555 1555 1.79 LINK SG CYS C 157 C3C HEC C 305 1555 1555 1.93 LINK SG CYS C 157 CAC HEC C 305 1555 1555 1.84 LINK SG CYS C 190 CAB HEC C 306 1555 1555 1.84 LINK SG CYS C 193 CAC HEC C 306 1555 1555 1.80 LINK SG CYS C 205 CAB HEC C 307 1555 1555 1.85 LINK SG CYS C 208 CAC HEC C 307 1555 1555 1.85 LINK SG CYS C 251 CAC HEC C 308 1555 1555 1.85 LINK NE2 HIS A 30 FE HEC A 301 1555 1555 2.28 LINK NE2 HIS A 40 FE HEC A 303 1555 1555 2.27 LINK NE2 HIS A 41 FE HEC A 302 1555 1555 2.03 LINK NE2 HIS A 69 FE HEC A 302 1555 1555 2.23 LINK NE2 HIS A 91 FE HEC A 303 1555 1555 2.18 LINK NE2 HIS A 96 FE HEC A 301 1555 1555 2.12 LINK NE2 HIS A 97 FE HEC A 304 1555 1555 2.01 LINK NE2 HIS A 111 FE HEC A 304 1555 1555 1.90 LINK NE2 HIS A 158 FE HEC A 305 1555 1555 2.01 LINK NE2 HIS A 182 FE HEC A 307 1555 1555 2.29 LINK NE2 HIS A 183 FE HEC A 306 1555 1555 1.85 LINK NE2 HIS A 194 FE HEC A 306 1555 1555 1.86 LINK NE2 HIS A 209 FE HEC A 307 1555 1555 2.15 LINK NE2 HIS A 215 FE HEC A 308 1555 1555 2.07 LINK NE2 HIS A 241 FE HEC A 305 1555 1555 1.95 LINK NE2 HIS A 252 FE HEC A 308 1555 1555 2.11 LINK NE2 HIS B 30 FE HEC B 301 1555 1555 2.28 LINK NE2 HIS B 40 FE HEC B 303 1555 1555 2.27 LINK NE2 HIS B 41 FE HEC B 302 1555 1555 2.03 LINK NE2 HIS B 69 FE HEC B 302 1555 1555 2.23 LINK NE2 HIS B 91 FE HEC B 303 1555 1555 2.18 LINK NE2 HIS B 96 FE HEC B 301 1555 1555 2.12 LINK NE2 HIS B 97 FE HEC B 304 1555 1555 2.01 LINK NE2 HIS B 111 FE HEC B 304 1555 1555 1.90 LINK NE2 HIS B 158 FE HEC B 305 1555 1555 2.01 LINK NE2 HIS B 182 FE HEC B 307 1555 1555 2.29 LINK NE2 HIS B 183 FE HEC B 306 1555 1555 1.85 LINK NE2 HIS B 194 FE HEC B 306 1555 1555 1.86 LINK NE2 HIS B 209 FE HEC B 307 1555 1555 2.15 LINK NE2 HIS B 215 FE HEC B 308 1555 1555 2.07 LINK NE2 HIS B 241 FE HEC B 305 1555 1555 1.95 LINK NE2 HIS B 252 FE HEC B 308 1555 1555 2.11 LINK NE2 HIS C 30 FE HEC C 301 1555 1555 2.28 LINK NE2 HIS C 40 FE HEC C 303 1555 1555 2.27 LINK NE2 HIS C 41 FE HEC C 302 1555 1555 2.03 LINK NE2 HIS C 69 FE HEC C 302 1555 1555 2.23 LINK NE2 HIS C 91 FE HEC C 303 1555 1555 2.18 LINK NE2 HIS C 96 FE HEC C 301 1555 1555 2.12 LINK NE2 HIS C 97 FE HEC C 304 1555 1555 2.01 LINK NE2 HIS C 111 FE HEC C 304 1555 1555 1.90 LINK NE2 HIS C 158 FE HEC C 305 1555 1555 2.01 LINK NE2 HIS C 182 FE HEC C 307 1555 1555 2.29 LINK NE2 HIS C 183 FE HEC C 306 1555 1555 1.85 LINK NE2 HIS C 194 FE HEC C 306 1555 1555 1.86 LINK NE2 HIS C 209 FE HEC C 307 1555 1555 2.15 LINK NE2 HIS C 215 FE HEC C 308 1555 1555 2.07 LINK NE2 HIS C 241 FE HEC C 305 1555 1555 1.95 LINK NE2 HIS C 252 FE HEC C 308 1555 1555 2.11 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000