HEADER GENE REGULATION/INHIBITOR 16-FEB-21 7LRK TITLE CRYSTAL STRUCTURE OF BPTF BROMODOMAIN IN COMPLEX WITH INHIBITOR PDY-3- TITLE 2 093 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BPTF BROMODOMAIN (UNIPROT RESIDUES 2917-3037); COMPND 5 SYNONYM: BROMODOMAIN AND PHD FINGER-CONTAINING TRANSCRIPTION FACTOR, COMPND 6 FETAL ALZ-50 CLONE 1 PROTEIN,FETAL ALZHEIMER ANTIGEN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BPTF, FAC1, FALZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS BPTF, BROMODOMAIN, INHIBITOR, GENE REGULATION, GENE REGULATION- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAN,E.SCHONBRUNN REVDAT 3 21-FEB-24 7LRK 1 JRNL REVDAT 2 18-OCT-23 7LRK 1 REMARK REVDAT 1 10-AUG-22 7LRK 0 JRNL AUTH H.ZAHID,C.R.BUCHHOLZ,M.SINGH,M.F.CICCONE,A.CHAN, JRNL AUTH 2 S.NITHIANANTHAM,K.SHI,H.AIHARA,M.FISCHER,E.SCHONBRUNN, JRNL AUTH 3 C.O.DOS SANTOS,J.W.LANDRY,W.C.K.POMERANTZ JRNL TITL NEW DESIGN RULES FOR DEVELOPING POTENT CELL-ACTIVE JRNL TITL 2 INHIBITORS OF THE NUCLEOSOME REMODELING FACTOR (NURF) VIA JRNL TITL 3 BPTF BROMODOMAIN INHIBITION. JRNL REF J.MED.CHEM. V. 64 13902 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34515477 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01294 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 43462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2800 - 2.9900 0.97 4826 138 0.1611 0.1962 REMARK 3 2 2.9900 - 2.3700 0.99 4776 135 0.1711 0.1803 REMARK 3 3 2.3700 - 2.0700 0.99 4695 133 0.1523 0.1735 REMARK 3 4 2.0700 - 1.8800 0.99 4747 135 0.1582 0.1776 REMARK 3 5 1.8800 - 1.7500 0.99 4735 134 0.1693 0.2060 REMARK 3 6 1.7500 - 1.6500 1.00 4723 135 0.1641 0.1784 REMARK 3 7 1.6500 - 1.5600 1.00 4671 132 0.1577 0.1719 REMARK 3 8 1.5600 - 1.5000 1.00 4696 133 0.1727 0.1819 REMARK 3 9 1.5000 - 1.4400 0.92 4393 125 0.2261 0.2654 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2918 THROUGH 2945 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1603 1.4736 -9.9533 REMARK 3 T TENSOR REMARK 3 T11: 0.0972 T22: 0.0698 REMARK 3 T33: 0.0938 T12: 0.0056 REMARK 3 T13: 0.0166 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.1839 L22: 0.6060 REMARK 3 L33: 5.5907 L12: 0.6646 REMARK 3 L13: 0.8399 L23: 0.6652 REMARK 3 S TENSOR REMARK 3 S11: -0.0737 S12: 0.1461 S13: 0.0402 REMARK 3 S21: -0.2214 S22: 0.0557 S23: -0.0789 REMARK 3 S31: -0.3580 S32: 0.1315 S33: 0.0238 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2946 THROUGH 2963 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0510 -6.8666 9.7762 REMARK 3 T TENSOR REMARK 3 T11: 0.0739 T22: 0.0811 REMARK 3 T33: 0.0470 T12: 0.0045 REMARK 3 T13: 0.0044 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 4.3123 L22: 6.0359 REMARK 3 L33: 1.5459 L12: 3.7116 REMARK 3 L13: -0.6216 L23: -1.4673 REMARK 3 S TENSOR REMARK 3 S11: 0.2273 S12: -0.2415 S13: -0.0399 REMARK 3 S21: 0.4368 S22: -0.2091 S23: 0.0168 REMARK 3 S31: 0.0216 S32: 0.0024 S33: -0.0143 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2964 THROUGH 2982 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7686 -10.9029 -0.5503 REMARK 3 T TENSOR REMARK 3 T11: 0.0414 T22: 0.0331 REMARK 3 T33: 0.0550 T12: 0.0029 REMARK 3 T13: -0.0006 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 4.4992 L22: 1.3179 REMARK 3 L33: 1.4997 L12: 1.0780 REMARK 3 L13: -1.7771 L23: -0.3946 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: 0.0449 S13: -0.1443 REMARK 3 S21: -0.0037 S22: -0.0304 S23: -0.0725 REMARK 3 S31: 0.0655 S32: 0.0144 S33: 0.0370 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2983 THROUGH 2988 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2970 -8.8935 -11.2624 REMARK 3 T TENSOR REMARK 3 T11: 0.0700 T22: 0.0492 REMARK 3 T33: 0.0675 T12: -0.0058 REMARK 3 T13: 0.0121 T23: -0.0239 REMARK 3 L TENSOR REMARK 3 L11: 6.6496 L22: 6.7161 REMARK 3 L33: 7.1239 L12: -1.5367 REMARK 3 L13: 0.8632 L23: -2.1320 REMARK 3 S TENSOR REMARK 3 S11: 0.0980 S12: 0.1939 S13: -0.1491 REMARK 3 S21: -0.2423 S22: -0.0790 S23: -0.1823 REMARK 3 S31: 0.1307 S32: 0.2418 S33: 0.0055 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2989 THROUGH 3036 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0834 1.1108 -1.7867 REMARK 3 T TENSOR REMARK 3 T11: 0.0263 T22: 0.0352 REMARK 3 T33: 0.0380 T12: 0.0099 REMARK 3 T13: -0.0137 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.6593 L22: 1.5897 REMARK 3 L33: 1.3550 L12: 0.5288 REMARK 3 L13: -0.9478 L23: -0.2845 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: 0.0017 S13: 0.0560 REMARK 3 S21: -0.0569 S22: 0.0146 S23: 0.0057 REMARK 3 S31: -0.0377 S32: 0.0004 S33: -0.0287 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2915 THROUGH 2929 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8090 -0.4017 -57.3447 REMARK 3 T TENSOR REMARK 3 T11: 0.1544 T22: 0.0963 REMARK 3 T33: 0.0496 T12: 0.0035 REMARK 3 T13: -0.0145 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 6.1286 L22: 2.6401 REMARK 3 L33: 3.7658 L12: -1.3471 REMARK 3 L13: -0.9008 L23: 0.7008 REMARK 3 S TENSOR REMARK 3 S11: 0.0965 S12: 0.0934 S13: -0.3026 REMARK 3 S21: -0.3170 S22: -0.0337 S23: -0.0654 REMARK 3 S31: 0.3107 S32: 0.1321 S33: -0.0735 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2930 THROUGH 2945 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5643 3.3308 -42.6239 REMARK 3 T TENSOR REMARK 3 T11: 0.0438 T22: 0.0622 REMARK 3 T33: 0.0956 T12: 0.0040 REMARK 3 T13: 0.0109 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.0908 L22: 1.6594 REMARK 3 L33: 8.6799 L12: 0.1193 REMARK 3 L13: 0.9306 L23: -1.9684 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: 0.0015 S13: -0.0827 REMARK 3 S21: -0.0510 S22: 0.0867 S23: 0.1415 REMARK 3 S31: 0.0072 S32: -0.3628 S33: -0.1242 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2946 THROUGH 2973 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9382 13.2099 -31.9454 REMARK 3 T TENSOR REMARK 3 T11: 0.0703 T22: 0.0643 REMARK 3 T33: 0.0630 T12: 0.0073 REMARK 3 T13: -0.0003 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 3.3276 L22: 2.9194 REMARK 3 L33: 1.5225 L12: 1.7244 REMARK 3 L13: -0.3781 L23: -0.1367 REMARK 3 S TENSOR REMARK 3 S11: 0.1184 S12: -0.1808 S13: 0.1146 REMARK 3 S21: 0.3101 S22: -0.0929 S23: 0.0262 REMARK 3 S31: -0.1566 S32: 0.0062 S33: -0.0172 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2974 THROUGH 3037 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7966 5.3774 -41.3927 REMARK 3 T TENSOR REMARK 3 T11: 0.0354 T22: 0.0401 REMARK 3 T33: 0.0428 T12: -0.0024 REMARK 3 T13: 0.0158 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.1977 L22: 1.0602 REMARK 3 L33: 0.9947 L12: -0.0835 REMARK 3 L13: 0.5709 L23: -0.2911 REMARK 3 S TENSOR REMARK 3 S11: -0.0124 S12: -0.0084 S13: 0.0196 REMARK 3 S21: -0.0365 S22: 0.0116 S23: 0.0117 REMARK 3 S31: 0.0150 S32: -0.0350 S33: 0.0024 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LRK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254817. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43465 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 38.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.37100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7K6R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE MONOHYDRATE, 0.1M REMARK 280 BIS-TRIS PH 6.5 AND 25% POLYETHYLENE GLYCOL 3,350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 13.53500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2915 REMARK 465 MET A 2916 REMARK 465 SER A 2917 REMARK 465 HIS A 3037 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3229 O HOH A 3262 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B2961 82.98 -157.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3337 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A3338 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B3343 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B3344 DISTANCE = 6.58 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YC4 A 3101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 3102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 3103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 3104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 3105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 3106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 3107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YC4 B 3101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 3102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 3103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 3104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 3105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 3106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 3107 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7LP0 RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN IN COMPLEX WITH A DIFFERENT INHIBITOR REMARK 900 RELATED ID: 7LPK RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN IN COMPLEX WITH A DIFFERENT INHIBITOR DBREF 7LRK A 2917 3037 UNP Q12830 BPTF_HUMAN 2917 3037 DBREF 7LRK B 2917 3037 UNP Q12830 BPTF_HUMAN 2917 3037 SEQADV 7LRK SER A 2915 UNP Q12830 EXPRESSION TAG SEQADV 7LRK MET A 2916 UNP Q12830 EXPRESSION TAG SEQADV 7LRK SER B 2915 UNP Q12830 EXPRESSION TAG SEQADV 7LRK MET B 2916 UNP Q12830 EXPRESSION TAG SEQRES 1 A 123 SER MET SER THR GLU ASP ALA MET THR VAL LEU THR PRO SEQRES 2 A 123 LEU THR GLU LYS ASP TYR GLU GLY LEU LYS ARG VAL LEU SEQRES 3 A 123 ARG SER LEU GLN ALA HIS LYS MET ALA TRP PRO PHE LEU SEQRES 4 A 123 GLU PRO VAL ASP PRO ASN ASP ALA PRO ASP TYR TYR GLY SEQRES 5 A 123 VAL ILE LYS GLU PRO MET ASP LEU ALA THR MET GLU GLU SEQRES 6 A 123 ARG VAL GLN ARG ARG TYR TYR GLU LYS LEU THR GLU PHE SEQRES 7 A 123 VAL ALA ASP MET THR LYS ILE PHE ASP ASN CYS ARG TYR SEQRES 8 A 123 TYR ASN PRO SER ASP SER PRO PHE TYR GLN CYS ALA GLU SEQRES 9 A 123 VAL LEU GLU SER PHE PHE VAL GLN LYS LEU LYS GLY PHE SEQRES 10 A 123 LYS ALA SER ARG SER HIS SEQRES 1 B 123 SER MET SER THR GLU ASP ALA MET THR VAL LEU THR PRO SEQRES 2 B 123 LEU THR GLU LYS ASP TYR GLU GLY LEU LYS ARG VAL LEU SEQRES 3 B 123 ARG SER LEU GLN ALA HIS LYS MET ALA TRP PRO PHE LEU SEQRES 4 B 123 GLU PRO VAL ASP PRO ASN ASP ALA PRO ASP TYR TYR GLY SEQRES 5 B 123 VAL ILE LYS GLU PRO MET ASP LEU ALA THR MET GLU GLU SEQRES 6 B 123 ARG VAL GLN ARG ARG TYR TYR GLU LYS LEU THR GLU PHE SEQRES 7 B 123 VAL ALA ASP MET THR LYS ILE PHE ASP ASN CYS ARG TYR SEQRES 8 B 123 TYR ASN PRO SER ASP SER PRO PHE TYR GLN CYS ALA GLU SEQRES 9 B 123 VAL LEU GLU SER PHE PHE VAL GLN LYS LEU LYS GLY PHE SEQRES 10 B 123 LYS ALA SER ARG SER HIS HET YC4 A3101 15 HET EDO A3102 4 HET EDO A3103 4 HET EDO A3104 4 HET EDO A3105 4 HET EDO A3106 4 HET EDO A3107 4 HET YC4 B3101 15 HET EDO B3102 4 HET EDO B3103 4 HET EDO B3104 4 HET EDO B3105 4 HET EDO B3106 4 HET EDO B3107 4 HETNAM YC4 4-CHLORANYL-2-METHYL-5-[[(3~{S})-PYRROLIDIN-3- HETNAM 2 YC4 YL]AMINO]PYRIDAZIN-3-ONE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 YC4 2(C9 H13 CL N4 O) FORMUL 4 EDO 12(C2 H6 O2) FORMUL 17 HOH *282(H2 O) HELIX 1 AA1 THR A 2918 THR A 2926 1 9 HELIX 2 AA2 THR A 2929 HIS A 2946 1 18 HELIX 3 AA3 ALA A 2949 LEU A 2953 5 5 HELIX 4 AA4 ASP A 2957 ALA A 2961 5 5 HELIX 5 AA5 ASP A 2963 ILE A 2968 1 6 HELIX 6 AA6 ASP A 2973 ARG A 2983 1 11 HELIX 7 AA7 LYS A 2988 ASN A 3007 1 20 HELIX 8 AA8 SER A 3011 ARG A 3035 1 25 HELIX 9 AA9 MET B 2916 THR B 2926 1 11 HELIX 10 AB1 THR B 2929 HIS B 2946 1 18 HELIX 11 AB2 LYS B 2947 LEU B 2953 5 7 HELIX 12 AB3 ASP B 2957 ALA B 2961 5 5 HELIX 13 AB4 ASP B 2963 ILE B 2968 1 6 HELIX 14 AB5 ASP B 2973 ARG B 2983 1 11 HELIX 15 AB6 LYS B 2988 ASN B 3007 1 20 HELIX 16 AB7 SER B 3011 HIS B 3037 1 27 SITE 1 AC1 11 PRO A2951 PHE A2952 GLU A2954 ASP A2960 SITE 2 AC1 11 ALA A2961 TYR A3006 ASN A3007 PHE A3013 SITE 3 AC1 11 HOH A3217 HOH A3232 SER B2917 SITE 1 AC2 5 SER A2942 PHE A3023 LYS A3027 EDO A3107 SITE 2 AC2 5 HOH A3250 SITE 1 AC3 7 TYR A2965 ARG A3004 GLU A3018 SER A3022 SITE 2 AC3 7 HOH A3202 HOH A3205 HOH A3221 SITE 1 AC4 5 HIS A2946 PRO A2955 TYR A2965 GLN A3026 SITE 2 AC4 5 HOH A3214 SITE 1 AC5 6 VAL A2967 ILE A2968 LYS A2969 TYR A3005 SITE 2 AC5 6 HOH A3237 HOH A3266 SITE 1 AC6 7 ASP A2963 TYR A2964 TYR A2965 GLY A2966 SITE 2 AC6 7 GLN A3015 HOH A3215 HOH A3219 SITE 1 AC7 4 ARG A2983 EDO A3102 HOH A3222 HOH A3231 SITE 1 AC8 12 PRO B2951 PHE B2952 GLU B2954 VAL B2956 SITE 2 AC8 12 ALA B2961 TYR B3006 ASN B3007 PHE B3013 SITE 3 AC8 12 HOH B3206 HOH B3240 HOH B3303 HOH B3310 SITE 1 AC9 3 SER B2942 LYS B3027 HOH B3256 SITE 1 AD1 6 TYR B2965 GLU B3018 GLU B3021 SER B3022 SITE 2 AD1 6 HOH B3237 HOH B3248 SITE 1 AD2 6 VAL B2967 ILE B2968 LYS B2969 TYR B3005 SITE 2 AD2 6 HOH B3232 HOH B3236 SITE 1 AD3 6 HIS B2946 PRO B2955 TYR B2965 SER B3022 SITE 2 AD3 6 GLN B3026 HOH B3230 SITE 1 AD4 7 ASP B2963 TYR B2964 TYR B2965 GLY B2966 SITE 2 AD4 7 GLN B3015 EDO B3107 HOH B3234 SITE 1 AD5 5 ASP B2963 GLY B2966 GLN B3015 GLU B3018 SITE 2 AD5 5 EDO B3106 CRYST1 58.310 27.070 76.720 90.00 93.67 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017150 0.000000 0.001099 0.00000 SCALE2 0.000000 0.036941 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013061 0.00000