HEADER GENE REGULATION/INHIBITOR 17-FEB-21 7LRO TITLE CRYSTAL STRUCTURE OF BPTF BROMODOMAIN IN COMPLEX WITH INHIBITOR HZ-01- TITLE 2 105 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BPTF BROMODOMAIN (UNIPROT RESIDUES 2917-3037); COMPND 5 SYNONYM: BROMODOMAIN AND PHD FINGER-CONTAINING TRANSCRIPTION FACTOR, COMPND 6 FETAL ALZ-50 CLONE 1 PROTEIN,FETAL ALZHEIMER ANTIGEN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BPTF, FAC1, FALZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS BPTF, BROMODOMAIN, INHIBITOR, GENE REGULATION, GENE REGULATION- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAN,E.SCHONBRUNN REVDAT 3 21-FEB-24 7LRO 1 JRNL REVDAT 2 18-OCT-23 7LRO 1 REMARK REVDAT 1 10-AUG-22 7LRO 0 JRNL AUTH H.ZAHID,C.R.BUCHHOLZ,M.SINGH,M.F.CICCONE,A.CHAN, JRNL AUTH 2 S.NITHIANANTHAM,K.SHI,H.AIHARA,M.FISCHER,E.SCHONBRUNN, JRNL AUTH 3 C.O.DOS SANTOS,J.W.LANDRY,W.C.K.POMERANTZ JRNL TITL NEW DESIGN RULES FOR DEVELOPING POTENT CELL-ACTIVE JRNL TITL 2 INHIBITORS OF THE NUCLEOSOME REMODELING FACTOR (NURF) VIA JRNL TITL 3 BPTF BROMODOMAIN INHIBITION. JRNL REF J.MED.CHEM. V. 64 13902 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34515477 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01294 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 43256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.0900 - 3.0200 0.99 4839 139 0.1489 0.1606 REMARK 3 2 3.0200 - 2.3900 1.00 4725 134 0.1521 0.1782 REMARK 3 3 2.3900 - 2.0900 1.00 4656 133 0.1411 0.1908 REMARK 3 4 2.0900 - 1.9000 1.00 4680 134 0.1580 0.1891 REMARK 3 5 1.9000 - 1.7600 1.00 4662 133 0.1602 0.2320 REMARK 3 6 1.7600 - 1.6600 1.00 4620 132 0.1746 0.2013 REMARK 3 7 1.6600 - 1.5800 1.00 4634 132 0.1783 0.2186 REMARK 3 8 1.5800 - 1.5100 1.00 4599 131 0.1872 0.2155 REMARK 3 9 1.5100 - 1.4500 1.00 4641 132 0.2153 0.2531 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2917 THROUGH 2929 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8407 2.8641 -19.1115 REMARK 3 T TENSOR REMARK 3 T11: 0.1812 T22: 0.1082 REMARK 3 T33: 0.0617 T12: 0.0004 REMARK 3 T13: 0.0287 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 8.0597 L22: 3.5331 REMARK 3 L33: 5.7344 L12: -0.9503 REMARK 3 L13: 3.1612 L23: -1.0286 REMARK 3 S TENSOR REMARK 3 S11: 0.1512 S12: 0.3244 S13: 0.3620 REMARK 3 S21: -0.1137 S22: -0.1807 S23: 0.0315 REMARK 3 S31: -0.6041 S32: 0.0112 S33: 0.0272 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2930 THROUGH 2945 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3427 0.6666 -4.0816 REMARK 3 T TENSOR REMARK 3 T11: 0.0423 T22: 0.0695 REMARK 3 T33: 0.0906 T12: 0.0161 REMARK 3 T13: -0.0068 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.9555 L22: 2.2365 REMARK 3 L33: 4.6330 L12: 1.4168 REMARK 3 L13: 0.0737 L23: 0.7524 REMARK 3 S TENSOR REMARK 3 S11: -0.0375 S12: 0.0470 S13: 0.0383 REMARK 3 S21: -0.1284 S22: 0.1374 S23: -0.0647 REMARK 3 S31: 0.0646 S32: 0.2615 S33: -0.0555 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2946 THROUGH 2963 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2482 -6.6758 9.7262 REMARK 3 T TENSOR REMARK 3 T11: 0.0987 T22: 0.0832 REMARK 3 T33: 0.0676 T12: -0.0014 REMARK 3 T13: 0.0089 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 3.8670 L22: 7.0301 REMARK 3 L33: 1.0059 L12: 4.9862 REMARK 3 L13: -0.7598 L23: -1.6785 REMARK 3 S TENSOR REMARK 3 S11: 0.3090 S12: -0.2962 S13: 0.0866 REMARK 3 S21: 0.5288 S22: -0.2619 S23: 0.1587 REMARK 3 S31: -0.0077 S32: 0.0333 S33: -0.0232 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2964 THROUGH 2982 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8065 -11.0856 -0.5633 REMARK 3 T TENSOR REMARK 3 T11: 0.0530 T22: 0.0315 REMARK 3 T33: 0.0591 T12: 0.0028 REMARK 3 T13: -0.0066 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 6.5393 L22: 1.1548 REMARK 3 L33: 1.3406 L12: 1.9262 REMARK 3 L13: -2.4073 L23: -0.6121 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.1143 S13: -0.1329 REMARK 3 S21: 0.0609 S22: -0.0131 S23: -0.0605 REMARK 3 S31: 0.0328 S32: 0.0064 S33: 0.0246 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2983 THROUGH 2988 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4399 -9.0959 -11.1762 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: 0.0650 REMARK 3 T33: 0.0801 T12: 0.0003 REMARK 3 T13: 0.0216 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 5.2381 L22: 5.9595 REMARK 3 L33: 3.4361 L12: -4.2418 REMARK 3 L13: 2.8201 L23: -3.3515 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: 0.2769 S13: -0.0631 REMARK 3 S21: -0.2369 S22: -0.2177 S23: -0.1110 REMARK 3 S31: 0.1649 S32: 0.2528 S33: 0.0760 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2989 THROUGH 3036 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0468 0.9897 -1.8350 REMARK 3 T TENSOR REMARK 3 T11: 0.0403 T22: 0.0406 REMARK 3 T33: 0.0348 T12: 0.0092 REMARK 3 T13: -0.0222 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.1586 L22: 1.7132 REMARK 3 L33: 1.1651 L12: 0.6530 REMARK 3 L13: -1.0829 L23: -0.1284 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: 0.0039 S13: 0.0296 REMARK 3 S21: -0.0615 S22: 0.0074 S23: -0.0185 REMARK 3 S31: -0.0439 S32: 0.0084 S33: -0.0087 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2917 THROUGH 2945 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6274 2.1528 -48.6287 REMARK 3 T TENSOR REMARK 3 T11: 0.0921 T22: 0.0634 REMARK 3 T33: 0.0880 T12: -0.0060 REMARK 3 T13: -0.0168 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.8903 L22: 0.5367 REMARK 3 L33: 6.1962 L12: 0.5594 REMARK 3 L13: 0.0745 L23: -0.2622 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: 0.0814 S13: -0.0464 REMARK 3 S21: -0.1436 S22: 0.0175 S23: 0.0694 REMARK 3 S31: 0.1812 S32: -0.2299 S33: 0.0730 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2946 THROUGH 2973 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7792 12.9806 -32.1214 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: 0.0645 REMARK 3 T33: 0.0674 T12: 0.0130 REMARK 3 T13: -0.0057 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 3.4892 L22: 3.0121 REMARK 3 L33: 1.4513 L12: 2.8550 REMARK 3 L13: -0.6907 L23: -0.4742 REMARK 3 S TENSOR REMARK 3 S11: 0.1384 S12: -0.1878 S13: 0.0893 REMARK 3 S21: 0.2583 S22: -0.1380 S23: 0.0189 REMARK 3 S31: -0.1095 S32: 0.0239 S33: 0.0015 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2974 THROUGH 3006 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2239 10.3556 -43.1768 REMARK 3 T TENSOR REMARK 3 T11: 0.0534 T22: 0.0277 REMARK 3 T33: 0.0491 T12: -0.0110 REMARK 3 T13: 0.0110 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 3.3956 L22: 1.0695 REMARK 3 L33: 1.5830 L12: -0.6546 REMARK 3 L13: 1.7895 L23: -0.3151 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.0111 S13: 0.0383 REMARK 3 S21: -0.0488 S22: 0.0172 S23: 0.0470 REMARK 3 S31: -0.0366 S32: -0.0052 S33: 0.0105 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3007 THROUGH 3037 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8932 -0.9027 -39.5057 REMARK 3 T TENSOR REMARK 3 T11: 0.0585 T22: 0.0339 REMARK 3 T33: 0.0496 T12: 0.0056 REMARK 3 T13: 0.0209 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.1088 L22: 1.9162 REMARK 3 L33: 2.2660 L12: 0.8659 REMARK 3 L13: 1.7454 L23: 0.2667 REMARK 3 S TENSOR REMARK 3 S11: 0.0806 S12: 0.0144 S13: -0.1525 REMARK 3 S21: -0.0650 S22: 0.0159 S23: -0.0282 REMARK 3 S31: 0.1709 S32: 0.0009 S33: -0.1117 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LRO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43259 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 33.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 7K6R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE MONOHYDRATE, 0.1M REMARK 280 BIS-TRIS PH 6.5 AND 25% POLYETHYLENE GLYCOL 3,350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 13.53500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2915 REMARK 465 MET A 2916 REMARK 465 HIS A 3037 REMARK 465 SER B 2915 REMARK 465 MET B 2916 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A2931 CG CD CE NZ REMARK 470 LYS A2947 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 3205 O HOH A 3265 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 3205 O HOH A 3378 1545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B2961 82.90 -159.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A3392 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B3373 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B3374 DISTANCE = 6.47 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 3101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YBV A 3102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 3103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 3104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 3105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 3106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 3107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YBV B 3101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 3102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 3103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 3104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 3105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 3106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 3107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 3108 DBREF 7LRO A 2917 3037 UNP Q12830 BPTF_HUMAN 2917 3037 DBREF 7LRO B 2917 3037 UNP Q12830 BPTF_HUMAN 2917 3037 SEQADV 7LRO SER A 2915 UNP Q12830 EXPRESSION TAG SEQADV 7LRO MET A 2916 UNP Q12830 EXPRESSION TAG SEQADV 7LRO SER B 2915 UNP Q12830 EXPRESSION TAG SEQADV 7LRO MET B 2916 UNP Q12830 EXPRESSION TAG SEQRES 1 A 123 SER MET SER THR GLU ASP ALA MET THR VAL LEU THR PRO SEQRES 2 A 123 LEU THR GLU LYS ASP TYR GLU GLY LEU LYS ARG VAL LEU SEQRES 3 A 123 ARG SER LEU GLN ALA HIS LYS MET ALA TRP PRO PHE LEU SEQRES 4 A 123 GLU PRO VAL ASP PRO ASN ASP ALA PRO ASP TYR TYR GLY SEQRES 5 A 123 VAL ILE LYS GLU PRO MET ASP LEU ALA THR MET GLU GLU SEQRES 6 A 123 ARG VAL GLN ARG ARG TYR TYR GLU LYS LEU THR GLU PHE SEQRES 7 A 123 VAL ALA ASP MET THR LYS ILE PHE ASP ASN CYS ARG TYR SEQRES 8 A 123 TYR ASN PRO SER ASP SER PRO PHE TYR GLN CYS ALA GLU SEQRES 9 A 123 VAL LEU GLU SER PHE PHE VAL GLN LYS LEU LYS GLY PHE SEQRES 10 A 123 LYS ALA SER ARG SER HIS SEQRES 1 B 123 SER MET SER THR GLU ASP ALA MET THR VAL LEU THR PRO SEQRES 2 B 123 LEU THR GLU LYS ASP TYR GLU GLY LEU LYS ARG VAL LEU SEQRES 3 B 123 ARG SER LEU GLN ALA HIS LYS MET ALA TRP PRO PHE LEU SEQRES 4 B 123 GLU PRO VAL ASP PRO ASN ASP ALA PRO ASP TYR TYR GLY SEQRES 5 B 123 VAL ILE LYS GLU PRO MET ASP LEU ALA THR MET GLU GLU SEQRES 6 B 123 ARG VAL GLN ARG ARG TYR TYR GLU LYS LEU THR GLU PHE SEQRES 7 B 123 VAL ALA ASP MET THR LYS ILE PHE ASP ASN CYS ARG TYR SEQRES 8 B 123 TYR ASN PRO SER ASP SER PRO PHE TYR GLN CYS ALA GLU SEQRES 9 B 123 VAL LEU GLU SER PHE PHE VAL GLN LYS LEU LYS GLY PHE SEQRES 10 B 123 LYS ALA SER ARG SER HIS HET DMS A3101 4 HET YBV A3102 14 HET EDO A3103 4 HET EDO A3104 4 HET EDO A3105 4 HET EDO A3106 4 HET EDO A3107 4 HET YBV B3101 14 HET EDO B3102 4 HET EDO B3103 4 HET EDO B3104 4 HET EDO B3105 4 HET EDO B3106 4 HET EDO B3107 4 HET EDO B3108 4 HETNAM DMS DIMETHYL SULFOXIDE HETNAM YBV 5-(AZETIDIN-3-YLAMINO)-4-CHLORANYL-2-METHYL-PYRIDAZIN- HETNAM 2 YBV 3-ONE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 DMS C2 H6 O S FORMUL 4 YBV 2(C8 H11 CL N4 O) FORMUL 5 EDO 12(C2 H6 O2) FORMUL 18 HOH *366(H2 O) HELIX 1 AA1 SER A 2917 THR A 2926 1 10 HELIX 2 AA2 THR A 2929 HIS A 2946 1 18 HELIX 3 AA3 ALA A 2949 LEU A 2953 5 5 HELIX 4 AA4 ASP A 2957 ALA A 2961 5 5 HELIX 5 AA5 ASP A 2963 ILE A 2968 1 6 HELIX 6 AA6 ASP A 2973 ARG A 2983 1 11 HELIX 7 AA7 LYS A 2988 ASN A 3007 1 20 HELIX 8 AA8 SER A 3011 ARG A 3035 1 25 HELIX 9 AA9 THR B 2918 THR B 2926 1 9 HELIX 10 AB1 THR B 2929 HIS B 2946 1 18 HELIX 11 AB2 LYS B 2947 LEU B 2953 5 7 HELIX 12 AB3 ASP B 2957 ALA B 2961 5 5 HELIX 13 AB4 ASP B 2963 ILE B 2968 1 6 HELIX 14 AB5 ASP B 2973 ARG B 2983 1 11 HELIX 15 AB6 LYS B 2988 ASN B 3007 1 20 HELIX 16 AB7 SER B 3011 HIS B 3037 1 27 SITE 1 AC1 4 LYS A2937 ARG A2941 EDO A3107 HOH A3207 SITE 1 AC2 10 PRO A2951 PHE A2952 VAL A2956 ALA A2961 SITE 2 AC2 10 TYR A3006 ASN A3007 PHE A3013 HOH A3210 SITE 3 AC2 10 HOH A3222 HOH A3268 SITE 1 AC3 6 VAL A2967 ILE A2968 LYS A2969 TYR A3005 SITE 2 AC3 6 HOH A3246 HOH A3257 SITE 1 AC4 7 ASP A2963 TYR A2964 TYR A2965 GLY A2966 SITE 2 AC4 7 GLN A3015 HOH A3208 HOH A3217 SITE 1 AC5 5 HIS A2946 PRO A2955 TYR A2965 GLN A3026 SITE 2 AC5 5 HOH A3229 SITE 1 AC6 8 TYR A2965 ARG A3004 GLU A3018 GLU A3021 SITE 2 AC6 8 SER A3022 HOH A3211 HOH A3298 HOH A3319 SITE 1 AC7 3 ARG A2941 GLN A2982 DMS A3101 SITE 1 AC8 14 THR A2918 PRO B2951 PHE B2952 GLU B2954 SITE 2 AC8 14 PRO B2955 VAL B2956 ALA B2961 TYR B3006 SITE 3 AC8 14 ASN B3007 PHE B3013 HOH B3215 HOH B3217 SITE 4 AC8 14 HOH B3232 HOH B3310 SITE 1 AC9 6 VAL B2967 ILE B2968 LYS B2969 TYR B3005 SITE 2 AC9 6 HOH B3227 HOH B3235 SITE 1 AD1 7 ASP B2963 TYR B2964 TYR B2965 GLY B2966 SITE 2 AD1 7 GLN B3015 EDO B3106 HOH B3204 SITE 1 AD2 7 TYR B2965 GLU B3018 GLU B3021 SER B3022 SITE 2 AD2 7 HOH B3245 HOH B3249 HOH B3256 SITE 1 AD3 2 ARG B2941 HOH B3211 SITE 1 AD4 5 ASP B2963 GLY B2966 GLN B3015 GLU B3018 SITE 2 AD4 5 EDO B3103 SITE 1 AD5 2 SER B2942 LYS B3027 SITE 1 AD6 5 HIS B2946 PRO B2955 TYR B2965 GLN B3026 SITE 2 AD6 5 HOH B3242 CRYST1 58.410 27.070 76.920 90.00 93.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017120 0.000000 0.001159 0.00000 SCALE2 0.000000 0.036941 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013030 0.00000