data_7LRS # _entry.id 7LRS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7LRS pdb_00007lrs 10.2210/pdb7lrs/pdb WWPDB D_1000254852 ? ? EMDB EMD-23498 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-07-14 2 'Structure model' 1 1 2021-08-25 3 'Structure model' 1 2 2024-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' 4 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' em_3d_fitting_list 7 3 'Structure model' em_admin 8 3 'Structure model' pdbx_entry_details 9 3 'Structure model' pdbx_initial_refinement_model 10 3 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation_author.identifier_ORCID' 3 2 'Structure model' '_citation_author.name' 4 2 'Structure model' '_database_2.pdbx_DOI' 5 2 'Structure model' '_database_2.pdbx_database_accession' 6 3 'Structure model' '_em_3d_fitting_list.accession_code' 7 3 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 8 3 'Structure model' '_em_3d_fitting_list.source_name' 9 3 'Structure model' '_em_3d_fitting_list.type' 10 3 'Structure model' '_em_admin.last_update' 11 3 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7LRS _pdbx_database_status.recvd_initial_deposition_date 2021-02-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-23498 'associated EM volume' EMDB 'Full spike with antibody' EMD-23499 'other EM volume' PDB 'Full spike with antibody' 7LRT unspecified EMDB 'Structure from same class member' EMD-23915 'other EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhou, T.' 1 0000-0002-3935-4637 'Tsybovsky, Y.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 373 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Ultrapotent antibodies against diverse and highly transmissible SARS-CoV-2 variants.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.abh1766 _citation.pdbx_database_id_PubMed 34210892 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, L.' 1 ? primary 'Zhou, T.' 2 ? primary 'Zhang, Y.' 3 ? primary 'Yang, E.S.' 4 ? primary 'Schramm, C.A.' 5 ? primary 'Shi, W.' 6 ? primary 'Pegu, A.' 7 ? primary 'Oloniniyi, O.K.' 8 ? primary 'Henry, A.R.' 9 ? primary 'Darko, S.' 10 ? primary 'Narpala, S.R.' 11 ? primary 'Hatcher, C.' 12 ? primary 'Martinez, D.R.' 13 ? primary 'Tsybovsky, Y.' 14 ? primary 'Phung, E.' 15 ? primary 'Abiona, O.M.' 16 ? primary 'Antia, A.' 17 ? primary 'Cale, E.M.' 18 ? primary 'Chang, L.A.' 19 ? primary 'Choe, M.' 20 ? primary 'Corbett, K.S.' 21 ? primary 'Davis, R.L.' 22 ? primary 'DiPiazza, A.T.' 23 ? primary 'Gordon, I.J.' 24 ? primary 'Hait, S.H.' 25 ? primary 'Hermanus, T.' 26 ? primary 'Kgagudi, P.' 27 ? primary 'Laboune, F.' 28 ? primary 'Leung, K.' 29 ? primary 'Liu, T.' 30 ? primary 'Mason, R.D.' 31 ? primary 'Nazzari, A.F.' 32 ? primary 'Novik, L.' 33 ? primary ;O'Connell, S. ; 34 ? primary ;O'Dell, S. ; 35 ? primary 'Olia, A.S.' 36 ? primary 'Schmidt, S.D.' 37 ? primary 'Stephens, T.' 38 ? primary 'Stringham, C.D.' 39 ? primary 'Talana, C.A.' 40 ? primary 'Teng, I.T.' 41 ? primary 'Wagner, D.A.' 42 ? primary 'Widge, A.T.' 43 ? primary 'Zhang, B.' 44 ? primary 'Roederer, M.' 45 ? primary 'Ledgerwood, J.E.' 46 ? primary 'Ruckwardt, T.J.' 47 ? primary 'Gaudinski, M.R.' 48 ? primary 'Moore, P.L.' 49 ? primary 'Doria-Rose, N.A.' 50 ? primary 'Baric, R.S.' 51 ? primary 'Graham, B.S.' 52 ? primary 'McDermott, A.B.' 53 ? primary 'Douek, D.C.' 54 ? primary 'Kwong, P.D.' 55 ? primary 'Mascola, J.R.' 56 ? primary 'Sullivan, N.J.' 57 ? primary 'Misasi, J.' 58 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike glycoprotein' 21986.652 1 ? ? 'receptor binding domain (UNP residues 332-527)' ? 2 polymer man 'antibody A23-58.1 heavy chain' 24363.426 1 ? ? ? ? 3 polymer man 'antibody A23-58.1 light chain' 23475.006 1 ? ? ? ? 4 branched man ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose ; 910.823 1 ? ? ? ? 5 branched man 'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Spike protein S1' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;ITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIA PGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFP LQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; ;ITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIA PGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFP LQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; C ? 2 'polypeptide(L)' no no ;QMQLVQSGPEVKKPGTSVKVSCKASGFTFTSSAVQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAY MELSSLRSEDTAVYYCAAPNCSNVVCYDGFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK ; ;QMQLVQSGPEVKKPGTSVKVSCKASGFTFTSSAVQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAY MELSSLRSEDTAVYYCAAPNCSNVVCYDGFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK ; D ? 3 'polypeptide(L)' no no ;EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYSASSRATGIPDRFSGSGSGTDFTLTISRLE PEDFAVYFCQQYGTSPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC ; ;EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYSASSRATGIPDRFSGSGSGTDFTLTISRLE PEDFAVYFCQQYGTSPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC ; E ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 THR n 1 3 ASN n 1 4 LEU n 1 5 CYS n 1 6 PRO n 1 7 PHE n 1 8 GLY n 1 9 GLU n 1 10 VAL n 1 11 PHE n 1 12 ASN n 1 13 ALA n 1 14 THR n 1 15 ARG n 1 16 PHE n 1 17 ALA n 1 18 SER n 1 19 VAL n 1 20 TYR n 1 21 ALA n 1 22 TRP n 1 23 ASN n 1 24 ARG n 1 25 LYS n 1 26 ARG n 1 27 ILE n 1 28 SER n 1 29 ASN n 1 30 CYS n 1 31 VAL n 1 32 ALA n 1 33 ASP n 1 34 TYR n 1 35 SER n 1 36 VAL n 1 37 LEU n 1 38 TYR n 1 39 ASN n 1 40 SER n 1 41 ALA n 1 42 SER n 1 43 PHE n 1 44 SER n 1 45 THR n 1 46 PHE n 1 47 LYS n 1 48 CYS n 1 49 TYR n 1 50 GLY n 1 51 VAL n 1 52 SER n 1 53 PRO n 1 54 THR n 1 55 LYS n 1 56 LEU n 1 57 ASN n 1 58 ASP n 1 59 LEU n 1 60 CYS n 1 61 PHE n 1 62 THR n 1 63 ASN n 1 64 VAL n 1 65 TYR n 1 66 ALA n 1 67 ASP n 1 68 SER n 1 69 PHE n 1 70 VAL n 1 71 ILE n 1 72 ARG n 1 73 GLY n 1 74 ASP n 1 75 GLU n 1 76 VAL n 1 77 ARG n 1 78 GLN n 1 79 ILE n 1 80 ALA n 1 81 PRO n 1 82 GLY n 1 83 GLN n 1 84 THR n 1 85 GLY n 1 86 LYS n 1 87 ILE n 1 88 ALA n 1 89 ASP n 1 90 TYR n 1 91 ASN n 1 92 TYR n 1 93 LYS n 1 94 LEU n 1 95 PRO n 1 96 ASP n 1 97 ASP n 1 98 PHE n 1 99 THR n 1 100 GLY n 1 101 CYS n 1 102 VAL n 1 103 ILE n 1 104 ALA n 1 105 TRP n 1 106 ASN n 1 107 SER n 1 108 ASN n 1 109 ASN n 1 110 LEU n 1 111 ASP n 1 112 SER n 1 113 LYS n 1 114 VAL n 1 115 GLY n 1 116 GLY n 1 117 ASN n 1 118 TYR n 1 119 ASN n 1 120 TYR n 1 121 LEU n 1 122 TYR n 1 123 ARG n 1 124 LEU n 1 125 PHE n 1 126 ARG n 1 127 LYS n 1 128 SER n 1 129 ASN n 1 130 LEU n 1 131 LYS n 1 132 PRO n 1 133 PHE n 1 134 GLU n 1 135 ARG n 1 136 ASP n 1 137 ILE n 1 138 SER n 1 139 THR n 1 140 GLU n 1 141 ILE n 1 142 TYR n 1 143 GLN n 1 144 ALA n 1 145 GLY n 1 146 SER n 1 147 THR n 1 148 PRO n 1 149 CYS n 1 150 ASN n 1 151 GLY n 1 152 VAL n 1 153 GLU n 1 154 GLY n 1 155 PHE n 1 156 ASN n 1 157 CYS n 1 158 TYR n 1 159 PHE n 1 160 PRO n 1 161 LEU n 1 162 GLN n 1 163 SER n 1 164 TYR n 1 165 GLY n 1 166 PHE n 1 167 GLN n 1 168 PRO n 1 169 THR n 1 170 ASN n 1 171 GLY n 1 172 VAL n 1 173 GLY n 1 174 TYR n 1 175 GLN n 1 176 PRO n 1 177 TYR n 1 178 ARG n 1 179 VAL n 1 180 VAL n 1 181 VAL n 1 182 LEU n 1 183 SER n 1 184 PHE n 1 185 GLU n 1 186 LEU n 1 187 LEU n 1 188 HIS n 1 189 ALA n 1 190 PRO n 1 191 ALA n 1 192 THR n 1 193 VAL n 1 194 CYS n 1 195 GLY n 1 196 PRO n 2 1 GLN n 2 2 MET n 2 3 GLN n 2 4 LEU n 2 5 VAL n 2 6 GLN n 2 7 SER n 2 8 GLY n 2 9 PRO n 2 10 GLU n 2 11 VAL n 2 12 LYS n 2 13 LYS n 2 14 PRO n 2 15 GLY n 2 16 THR n 2 17 SER n 2 18 VAL n 2 19 LYS n 2 20 VAL n 2 21 SER n 2 22 CYS n 2 23 LYS n 2 24 ALA n 2 25 SER n 2 26 GLY n 2 27 PHE n 2 28 THR n 2 29 PHE n 2 30 THR n 2 31 SER n 2 32 SER n 2 33 ALA n 2 34 VAL n 2 35 GLN n 2 36 TRP n 2 37 VAL n 2 38 ARG n 2 39 GLN n 2 40 ALA n 2 41 ARG n 2 42 GLY n 2 43 GLN n 2 44 ARG n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 ILE n 2 49 GLY n 2 50 TRP n 2 51 ILE n 2 52 VAL n 2 53 VAL n 2 54 GLY n 2 55 SER n 2 56 GLY n 2 57 ASN n 2 58 THR n 2 59 ASN n 2 60 TYR n 2 61 ALA n 2 62 GLN n 2 63 LYS n 2 64 PHE n 2 65 GLN n 2 66 GLU n 2 67 ARG n 2 68 VAL n 2 69 THR n 2 70 ILE n 2 71 THR n 2 72 ARG n 2 73 ASP n 2 74 MET n 2 75 SER n 2 76 THR n 2 77 SER n 2 78 THR n 2 79 ALA n 2 80 TYR n 2 81 MET n 2 82 GLU n 2 83 LEU n 2 84 SER n 2 85 SER n 2 86 LEU n 2 87 ARG n 2 88 SER n 2 89 GLU n 2 90 ASP n 2 91 THR n 2 92 ALA n 2 93 VAL n 2 94 TYR n 2 95 TYR n 2 96 CYS n 2 97 ALA n 2 98 ALA n 2 99 PRO n 2 100 ASN n 2 101 CYS n 2 102 SER n 2 103 ASN n 2 104 VAL n 2 105 VAL n 2 106 CYS n 2 107 TYR n 2 108 ASP n 2 109 GLY n 2 110 PHE n 2 111 ASP n 2 112 ILE n 2 113 TRP n 2 114 GLY n 2 115 GLN n 2 116 GLY n 2 117 THR n 2 118 MET n 2 119 VAL n 2 120 THR n 2 121 VAL n 2 122 SER n 2 123 SER n 2 124 ALA n 2 125 SER n 2 126 THR n 2 127 LYS n 2 128 GLY n 2 129 PRO n 2 130 SER n 2 131 VAL n 2 132 PHE n 2 133 PRO n 2 134 LEU n 2 135 ALA n 2 136 PRO n 2 137 SER n 2 138 SER n 2 139 LYS n 2 140 SER n 2 141 THR n 2 142 SER n 2 143 GLY n 2 144 GLY n 2 145 THR n 2 146 ALA n 2 147 ALA n 2 148 LEU n 2 149 GLY n 2 150 CYS n 2 151 LEU n 2 152 VAL n 2 153 LYS n 2 154 ASP n 2 155 TYR n 2 156 PHE n 2 157 PRO n 2 158 GLU n 2 159 PRO n 2 160 VAL n 2 161 THR n 2 162 VAL n 2 163 SER n 2 164 TRP n 2 165 ASN n 2 166 SER n 2 167 GLY n 2 168 ALA n 2 169 LEU n 2 170 THR n 2 171 SER n 2 172 GLY n 2 173 VAL n 2 174 HIS n 2 175 THR n 2 176 PHE n 2 177 PRO n 2 178 ALA n 2 179 VAL n 2 180 LEU n 2 181 GLN n 2 182 SER n 2 183 SER n 2 184 GLY n 2 185 LEU n 2 186 TYR n 2 187 SER n 2 188 LEU n 2 189 SER n 2 190 SER n 2 191 VAL n 2 192 VAL n 2 193 THR n 2 194 VAL n 2 195 PRO n 2 196 SER n 2 197 SER n 2 198 SER n 2 199 LEU n 2 200 GLY n 2 201 THR n 2 202 GLN n 2 203 THR n 2 204 TYR n 2 205 ILE n 2 206 CYS n 2 207 ASN n 2 208 VAL n 2 209 ASN n 2 210 HIS n 2 211 LYS n 2 212 PRO n 2 213 SER n 2 214 ASN n 2 215 THR n 2 216 LYS n 2 217 VAL n 2 218 ASP n 2 219 LYS n 2 220 LYS n 2 221 VAL n 2 222 GLU n 2 223 PRO n 2 224 LYS n 2 225 SER n 2 226 CYS n 2 227 ASP n 2 228 LYS n 3 1 GLU n 3 2 ILE n 3 3 VAL n 3 4 LEU n 3 5 THR n 3 6 GLN n 3 7 SER n 3 8 PRO n 3 9 GLY n 3 10 THR n 3 11 LEU n 3 12 SER n 3 13 LEU n 3 14 SER n 3 15 PRO n 3 16 GLY n 3 17 GLU n 3 18 ARG n 3 19 ALA n 3 20 THR n 3 21 LEU n 3 22 SER n 3 23 CYS n 3 24 ARG n 3 25 ALA n 3 26 SER n 3 27 GLN n 3 28 SER n 3 29 VAL n 3 30 SER n 3 31 SER n 3 32 SER n 3 33 TYR n 3 34 LEU n 3 35 ALA n 3 36 TRP n 3 37 TYR n 3 38 GLN n 3 39 GLN n 3 40 LYS n 3 41 PRO n 3 42 GLY n 3 43 GLN n 3 44 ALA n 3 45 PRO n 3 46 ARG n 3 47 LEU n 3 48 LEU n 3 49 ILE n 3 50 TYR n 3 51 SER n 3 52 ALA n 3 53 SER n 3 54 SER n 3 55 ARG n 3 56 ALA n 3 57 THR n 3 58 GLY n 3 59 ILE n 3 60 PRO n 3 61 ASP n 3 62 ARG n 3 63 PHE n 3 64 SER n 3 65 GLY n 3 66 SER n 3 67 GLY n 3 68 SER n 3 69 GLY n 3 70 THR n 3 71 ASP n 3 72 PHE n 3 73 THR n 3 74 LEU n 3 75 THR n 3 76 ILE n 3 77 SER n 3 78 ARG n 3 79 LEU n 3 80 GLU n 3 81 PRO n 3 82 GLU n 3 83 ASP n 3 84 PHE n 3 85 ALA n 3 86 VAL n 3 87 TYR n 3 88 PHE n 3 89 CYS n 3 90 GLN n 3 91 GLN n 3 92 TYR n 3 93 GLY n 3 94 THR n 3 95 SER n 3 96 PRO n 3 97 TRP n 3 98 THR n 3 99 PHE n 3 100 GLY n 3 101 GLN n 3 102 GLY n 3 103 THR n 3 104 LYS n 3 105 VAL n 3 106 GLU n 3 107 ILE n 3 108 LYS n 3 109 ARG n 3 110 THR n 3 111 VAL n 3 112 ALA n 3 113 ALA n 3 114 PRO n 3 115 SER n 3 116 VAL n 3 117 PHE n 3 118 ILE n 3 119 PHE n 3 120 PRO n 3 121 PRO n 3 122 SER n 3 123 ASP n 3 124 GLU n 3 125 GLN n 3 126 LEU n 3 127 LYS n 3 128 SER n 3 129 GLY n 3 130 THR n 3 131 ALA n 3 132 SER n 3 133 VAL n 3 134 VAL n 3 135 CYS n 3 136 LEU n 3 137 LEU n 3 138 ASN n 3 139 ASN n 3 140 PHE n 3 141 TYR n 3 142 PRO n 3 143 ARG n 3 144 GLU n 3 145 ALA n 3 146 LYS n 3 147 VAL n 3 148 GLN n 3 149 TRP n 3 150 LYS n 3 151 VAL n 3 152 ASP n 3 153 ASN n 3 154 ALA n 3 155 LEU n 3 156 GLN n 3 157 SER n 3 158 GLY n 3 159 ASN n 3 160 SER n 3 161 GLN n 3 162 GLU n 3 163 SER n 3 164 VAL n 3 165 THR n 3 166 GLU n 3 167 GLN n 3 168 ASP n 3 169 SER n 3 170 LYS n 3 171 ASP n 3 172 SER n 3 173 THR n 3 174 TYR n 3 175 SER n 3 176 LEU n 3 177 SER n 3 178 SER n 3 179 THR n 3 180 LEU n 3 181 THR n 3 182 LEU n 3 183 SER n 3 184 LYS n 3 185 ALA n 3 186 ASP n 3 187 TYR n 3 188 GLU n 3 189 LYS n 3 190 HIS n 3 191 LYS n 3 192 VAL n 3 193 TYR n 3 194 ALA n 3 195 CYS n 3 196 GLU n 3 197 VAL n 3 198 THR n 3 199 HIS n 3 200 GLN n 3 201 GLY n 3 202 LEU n 3 203 SER n 3 204 SER n 3 205 PRO n 3 206 VAL n 3 207 THR n 3 208 LYS n 3 209 SER n 3 210 PHE n 3 211 ASN n 3 212 ARG n 3 213 GLY n 3 214 GLU n 3 215 CYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 196 '2019-nCoV, SARS-CoV-2' ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'HEK 293F' ? ? ? ? ? plasmid ? ? ? pVRC8400 ? ? 2 1 sample 'Biological sequence' 1 228 Human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 215 Human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 4 'DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH' 'Glycam Condensed Sequence' GMML 1.0 2 4 'WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1' WURCS PDB2Glycan 1.1.0 3 4 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}' LINUCS PDB-CARE ? 4 5 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH 'Glycam Condensed Sequence' GMML 1.0 5 5 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 6 5 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 4 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 4 4 MAN C1 O1 3 BMA O3 HO3 sing ? 4 4 5 MAN C1 O1 3 BMA O6 HO6 sing ? 5 5 2 NAG C1 O1 1 NAG O4 HO4 sing ? 6 5 3 BMA C1 O1 2 NAG O4 HO4 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 332 332 ILE ILE C . n A 1 2 THR 2 333 333 THR THR C . n A 1 3 ASN 3 334 334 ASN ASN C . n A 1 4 LEU 4 335 335 LEU LEU C . n A 1 5 CYS 5 336 336 CYS CYS C . n A 1 6 PRO 6 337 337 PRO PRO C . n A 1 7 PHE 7 338 338 PHE PHE C . n A 1 8 GLY 8 339 339 GLY GLY C . n A 1 9 GLU 9 340 340 GLU GLU C . n A 1 10 VAL 10 341 341 VAL VAL C . n A 1 11 PHE 11 342 342 PHE PHE C . n A 1 12 ASN 12 343 343 ASN ASN C . n A 1 13 ALA 13 344 344 ALA ALA C . n A 1 14 THR 14 345 345 THR THR C . n A 1 15 ARG 15 346 346 ARG ARG C . n A 1 16 PHE 16 347 347 PHE PHE C . n A 1 17 ALA 17 348 348 ALA ALA C . n A 1 18 SER 18 349 349 SER SER C . n A 1 19 VAL 19 350 350 VAL VAL C . n A 1 20 TYR 20 351 351 TYR TYR C . n A 1 21 ALA 21 352 352 ALA ALA C . n A 1 22 TRP 22 353 353 TRP TRP C . n A 1 23 ASN 23 354 354 ASN ASN C . n A 1 24 ARG 24 355 355 ARG ARG C . n A 1 25 LYS 25 356 356 LYS LYS C . n A 1 26 ARG 26 357 357 ARG ARG C . n A 1 27 ILE 27 358 358 ILE ILE C . n A 1 28 SER 28 359 359 SER SER C . n A 1 29 ASN 29 360 360 ASN ASN C . n A 1 30 CYS 30 361 361 CYS CYS C . n A 1 31 VAL 31 362 362 VAL VAL C . n A 1 32 ALA 32 363 363 ALA ALA C . n A 1 33 ASP 33 364 364 ASP ASP C . n A 1 34 TYR 34 365 365 TYR TYR C . n A 1 35 SER 35 366 366 SER SER C . n A 1 36 VAL 36 367 367 VAL VAL C . n A 1 37 LEU 37 368 368 LEU LEU C . n A 1 38 TYR 38 369 369 TYR TYR C . n A 1 39 ASN 39 370 370 ASN ASN C . n A 1 40 SER 40 371 371 SER SER C . n A 1 41 ALA 41 372 372 ALA ALA C . n A 1 42 SER 42 373 373 SER SER C . n A 1 43 PHE 43 374 374 PHE PHE C . n A 1 44 SER 44 375 375 SER SER C . n A 1 45 THR 45 376 376 THR THR C . n A 1 46 PHE 46 377 377 PHE PHE C . n A 1 47 LYS 47 378 378 LYS LYS C . n A 1 48 CYS 48 379 379 CYS CYS C . n A 1 49 TYR 49 380 380 TYR TYR C . n A 1 50 GLY 50 381 381 GLY GLY C . n A 1 51 VAL 51 382 382 VAL VAL C . n A 1 52 SER 52 383 383 SER SER C . n A 1 53 PRO 53 384 384 PRO PRO C . n A 1 54 THR 54 385 385 THR THR C . n A 1 55 LYS 55 386 386 LYS LYS C . n A 1 56 LEU 56 387 387 LEU LEU C . n A 1 57 ASN 57 388 388 ASN ASN C . n A 1 58 ASP 58 389 389 ASP ASP C . n A 1 59 LEU 59 390 390 LEU LEU C . n A 1 60 CYS 60 391 391 CYS CYS C . n A 1 61 PHE 61 392 392 PHE PHE C . n A 1 62 THR 62 393 393 THR THR C . n A 1 63 ASN 63 394 394 ASN ASN C . n A 1 64 VAL 64 395 395 VAL VAL C . n A 1 65 TYR 65 396 396 TYR TYR C . n A 1 66 ALA 66 397 397 ALA ALA C . n A 1 67 ASP 67 398 398 ASP ASP C . n A 1 68 SER 68 399 399 SER SER C . n A 1 69 PHE 69 400 400 PHE PHE C . n A 1 70 VAL 70 401 401 VAL VAL C . n A 1 71 ILE 71 402 402 ILE ILE C . n A 1 72 ARG 72 403 403 ARG ARG C . n A 1 73 GLY 73 404 404 GLY GLY C . n A 1 74 ASP 74 405 405 ASP ASP C . n A 1 75 GLU 75 406 406 GLU GLU C . n A 1 76 VAL 76 407 407 VAL VAL C . n A 1 77 ARG 77 408 408 ARG ARG C . n A 1 78 GLN 78 409 409 GLN GLN C . n A 1 79 ILE 79 410 410 ILE ILE C . n A 1 80 ALA 80 411 411 ALA ALA C . n A 1 81 PRO 81 412 412 PRO PRO C . n A 1 82 GLY 82 413 413 GLY GLY C . n A 1 83 GLN 83 414 414 GLN GLN C . n A 1 84 THR 84 415 415 THR THR C . n A 1 85 GLY 85 416 416 GLY GLY C . n A 1 86 LYS 86 417 417 LYS LYS C . n A 1 87 ILE 87 418 418 ILE ILE C . n A 1 88 ALA 88 419 419 ALA ALA C . n A 1 89 ASP 89 420 420 ASP ASP C . n A 1 90 TYR 90 421 421 TYR TYR C . n A 1 91 ASN 91 422 422 ASN ASN C . n A 1 92 TYR 92 423 423 TYR TYR C . n A 1 93 LYS 93 424 424 LYS LYS C . n A 1 94 LEU 94 425 425 LEU LEU C . n A 1 95 PRO 95 426 426 PRO PRO C . n A 1 96 ASP 96 427 427 ASP ASP C . n A 1 97 ASP 97 428 428 ASP ASP C . n A 1 98 PHE 98 429 429 PHE PHE C . n A 1 99 THR 99 430 430 THR THR C . n A 1 100 GLY 100 431 431 GLY GLY C . n A 1 101 CYS 101 432 432 CYS CYS C . n A 1 102 VAL 102 433 433 VAL VAL C . n A 1 103 ILE 103 434 434 ILE ILE C . n A 1 104 ALA 104 435 435 ALA ALA C . n A 1 105 TRP 105 436 436 TRP TRP C . n A 1 106 ASN 106 437 437 ASN ASN C . n A 1 107 SER 107 438 438 SER SER C . n A 1 108 ASN 108 439 439 ASN ASN C . n A 1 109 ASN 109 440 440 ASN ASN C . n A 1 110 LEU 110 441 441 LEU LEU C . n A 1 111 ASP 111 442 442 ASP ASP C . n A 1 112 SER 112 443 443 SER SER C . n A 1 113 LYS 113 444 444 LYS LYS C . n A 1 114 VAL 114 445 445 VAL VAL C . n A 1 115 GLY 115 446 446 GLY GLY C . n A 1 116 GLY 116 447 447 GLY GLY C . n A 1 117 ASN 117 448 448 ASN ASN C . n A 1 118 TYR 118 449 449 TYR TYR C . n A 1 119 ASN 119 450 450 ASN ASN C . n A 1 120 TYR 120 451 451 TYR TYR C . n A 1 121 LEU 121 452 452 LEU LEU C . n A 1 122 TYR 122 453 453 TYR TYR C . n A 1 123 ARG 123 454 454 ARG ARG C . n A 1 124 LEU 124 455 455 LEU LEU C . n A 1 125 PHE 125 456 456 PHE PHE C . n A 1 126 ARG 126 457 457 ARG ARG C . n A 1 127 LYS 127 458 458 LYS LYS C . n A 1 128 SER 128 459 459 SER SER C . n A 1 129 ASN 129 460 460 ASN ASN C . n A 1 130 LEU 130 461 461 LEU LEU C . n A 1 131 LYS 131 462 462 LYS LYS C . n A 1 132 PRO 132 463 463 PRO PRO C . n A 1 133 PHE 133 464 464 PHE PHE C . n A 1 134 GLU 134 465 465 GLU GLU C . n A 1 135 ARG 135 466 466 ARG ARG C . n A 1 136 ASP 136 467 467 ASP ASP C . n A 1 137 ILE 137 468 468 ILE ILE C . n A 1 138 SER 138 469 469 SER SER C . n A 1 139 THR 139 470 470 THR THR C . n A 1 140 GLU 140 471 471 GLU GLU C . n A 1 141 ILE 141 472 472 ILE ILE C . n A 1 142 TYR 142 473 473 TYR TYR C . n A 1 143 GLN 143 474 474 GLN GLN C . n A 1 144 ALA 144 475 475 ALA ALA C . n A 1 145 GLY 145 476 476 GLY GLY C . n A 1 146 SER 146 477 477 SER SER C . n A 1 147 THR 147 478 478 THR THR C . n A 1 148 PRO 148 479 479 PRO PRO C . n A 1 149 CYS 149 480 480 CYS CYS C . n A 1 150 ASN 150 481 481 ASN ASN C . n A 1 151 GLY 151 482 482 GLY GLY C . n A 1 152 VAL 152 483 483 VAL VAL C . n A 1 153 GLU 153 484 484 GLU GLU C . n A 1 154 GLY 154 485 485 GLY GLY C . n A 1 155 PHE 155 486 486 PHE PHE C . n A 1 156 ASN 156 487 487 ASN ASN C . n A 1 157 CYS 157 488 488 CYS CYS C . n A 1 158 TYR 158 489 489 TYR TYR C . n A 1 159 PHE 159 490 490 PHE PHE C . n A 1 160 PRO 160 491 491 PRO PRO C . n A 1 161 LEU 161 492 492 LEU LEU C . n A 1 162 GLN 162 493 493 GLN GLN C . n A 1 163 SER 163 494 494 SER SER C . n A 1 164 TYR 164 495 495 TYR TYR C . n A 1 165 GLY 165 496 496 GLY GLY C . n A 1 166 PHE 166 497 497 PHE PHE C . n A 1 167 GLN 167 498 498 GLN GLN C . n A 1 168 PRO 168 499 499 PRO PRO C . n A 1 169 THR 169 500 500 THR THR C . n A 1 170 ASN 170 501 501 ASN ASN C . n A 1 171 GLY 171 502 502 GLY GLY C . n A 1 172 VAL 172 503 503 VAL VAL C . n A 1 173 GLY 173 504 504 GLY GLY C . n A 1 174 TYR 174 505 505 TYR TYR C . n A 1 175 GLN 175 506 506 GLN GLN C . n A 1 176 PRO 176 507 507 PRO PRO C . n A 1 177 TYR 177 508 508 TYR TYR C . n A 1 178 ARG 178 509 509 ARG ARG C . n A 1 179 VAL 179 510 510 VAL VAL C . n A 1 180 VAL 180 511 511 VAL VAL C . n A 1 181 VAL 181 512 512 VAL VAL C . n A 1 182 LEU 182 513 513 LEU LEU C . n A 1 183 SER 183 514 514 SER SER C . n A 1 184 PHE 184 515 515 PHE PHE C . n A 1 185 GLU 185 516 516 GLU GLU C . n A 1 186 LEU 186 517 517 LEU LEU C . n A 1 187 LEU 187 518 518 LEU LEU C . n A 1 188 HIS 188 519 519 HIS HIS C . n A 1 189 ALA 189 520 520 ALA ALA C . n A 1 190 PRO 190 521 521 PRO PRO C . n A 1 191 ALA 191 522 522 ALA ALA C . n A 1 192 THR 192 523 523 THR THR C . n A 1 193 VAL 193 524 524 VAL VAL C . n A 1 194 CYS 194 525 525 CYS CYS C . n A 1 195 GLY 195 526 526 GLY GLY C . n A 1 196 PRO 196 527 527 PRO PRO C . n B 2 1 GLN 1 1 1 GLN GLN D . n B 2 2 MET 2 2 2 MET MET D . n B 2 3 GLN 3 3 3 GLN GLN D . n B 2 4 LEU 4 4 4 LEU LEU D . n B 2 5 VAL 5 5 5 VAL VAL D . n B 2 6 GLN 6 6 6 GLN GLN D . n B 2 7 SER 7 7 7 SER SER D . n B 2 8 GLY 8 8 8 GLY GLY D . n B 2 9 PRO 9 9 9 PRO PRO D . n B 2 10 GLU 10 10 10 GLU GLU D . n B 2 11 VAL 11 11 11 VAL VAL D . n B 2 12 LYS 12 12 12 LYS LYS D . n B 2 13 LYS 13 13 13 LYS LYS D . n B 2 14 PRO 14 14 14 PRO PRO D . n B 2 15 GLY 15 15 15 GLY GLY D . n B 2 16 THR 16 16 16 THR THR D . n B 2 17 SER 17 17 17 SER SER D . n B 2 18 VAL 18 18 18 VAL VAL D . n B 2 19 LYS 19 19 19 LYS LYS D . n B 2 20 VAL 20 20 20 VAL VAL D . n B 2 21 SER 21 21 21 SER SER D . n B 2 22 CYS 22 22 22 CYS CYS D . n B 2 23 LYS 23 23 23 LYS LYS D . n B 2 24 ALA 24 24 24 ALA ALA D . n B 2 25 SER 25 25 25 SER SER D . n B 2 26 GLY 26 26 26 GLY GLY D . n B 2 27 PHE 27 27 27 PHE PHE D . n B 2 28 THR 28 28 28 THR THR D . n B 2 29 PHE 29 29 29 PHE PHE D . n B 2 30 THR 30 30 30 THR THR D . n B 2 31 SER 31 31 31 SER SER D . n B 2 32 SER 32 32 32 SER SER D . n B 2 33 ALA 33 33 33 ALA ALA D . n B 2 34 VAL 34 34 34 VAL VAL D . n B 2 35 GLN 35 35 35 GLN GLN D . n B 2 36 TRP 36 36 36 TRP TRP D . n B 2 37 VAL 37 37 37 VAL VAL D . n B 2 38 ARG 38 38 38 ARG ARG D . n B 2 39 GLN 39 39 39 GLN GLN D . n B 2 40 ALA 40 40 40 ALA ALA D . n B 2 41 ARG 41 41 41 ARG ARG D . n B 2 42 GLY 42 42 42 GLY GLY D . n B 2 43 GLN 43 43 43 GLN GLN D . n B 2 44 ARG 44 44 44 ARG ARG D . n B 2 45 LEU 45 45 45 LEU LEU D . n B 2 46 GLU 46 46 46 GLU GLU D . n B 2 47 TRP 47 47 47 TRP TRP D . n B 2 48 ILE 48 48 48 ILE ILE D . n B 2 49 GLY 49 49 49 GLY GLY D . n B 2 50 TRP 50 50 50 TRP TRP D . n B 2 51 ILE 51 51 51 ILE ILE D . n B 2 52 VAL 52 52 52 VAL VAL D . n B 2 53 VAL 53 52 52 VAL VAL D A n B 2 54 GLY 54 53 53 GLY GLY D . n B 2 55 SER 55 54 54 SER SER D . n B 2 56 GLY 56 55 55 GLY GLY D . n B 2 57 ASN 57 56 56 ASN ASN D . n B 2 58 THR 58 57 57 THR THR D . n B 2 59 ASN 59 58 58 ASN ASN D . n B 2 60 TYR 60 59 59 TYR TYR D . n B 2 61 ALA 61 60 60 ALA ALA D . n B 2 62 GLN 62 61 61 GLN GLN D . n B 2 63 LYS 63 62 62 LYS LYS D . n B 2 64 PHE 64 63 63 PHE PHE D . n B 2 65 GLN 65 64 64 GLN GLN D . n B 2 66 GLU 66 65 65 GLU GLU D . n B 2 67 ARG 67 66 66 ARG ARG D . n B 2 68 VAL 68 67 67 VAL VAL D . n B 2 69 THR 69 68 68 THR THR D . n B 2 70 ILE 70 69 69 ILE ILE D . n B 2 71 THR 71 70 70 THR THR D . n B 2 72 ARG 72 71 71 ARG ARG D . n B 2 73 ASP 73 72 72 ASP ASP D . n B 2 74 MET 74 73 73 MET MET D . n B 2 75 SER 75 74 74 SER SER D . n B 2 76 THR 76 75 75 THR THR D . n B 2 77 SER 77 76 76 SER SER D . n B 2 78 THR 78 77 77 THR THR D . n B 2 79 ALA 79 78 78 ALA ALA D . n B 2 80 TYR 80 79 79 TYR TYR D . n B 2 81 MET 81 80 80 MET MET D . n B 2 82 GLU 82 81 81 GLU GLU D . n B 2 83 LEU 83 82 82 LEU LEU D . n B 2 84 SER 84 82 82 SER SER D A n B 2 85 SER 85 82 82 SER SER D B n B 2 86 LEU 86 82 82 LEU LEU D C n B 2 87 ARG 87 83 83 ARG ARG D . n B 2 88 SER 88 84 84 SER SER D . n B 2 89 GLU 89 85 85 GLU GLU D . n B 2 90 ASP 90 86 86 ASP ASP D . n B 2 91 THR 91 87 87 THR THR D . n B 2 92 ALA 92 88 88 ALA ALA D . n B 2 93 VAL 93 89 89 VAL VAL D . n B 2 94 TYR 94 90 90 TYR TYR D . n B 2 95 TYR 95 91 91 TYR TYR D . n B 2 96 CYS 96 92 92 CYS CYS D . n B 2 97 ALA 97 93 93 ALA ALA D . n B 2 98 ALA 98 94 94 ALA ALA D . n B 2 99 PRO 99 95 95 PRO PRO D . n B 2 100 ASN 100 96 96 ASN ASN D . n B 2 101 CYS 101 97 97 CYS CYS D . n B 2 102 SER 102 98 98 SER SER D . n B 2 103 ASN 103 99 99 ASN ASN D . n B 2 104 VAL 104 100 100 VAL VAL D . n B 2 105 VAL 105 100 100 VAL VAL D A n B 2 106 CYS 106 100 100 CYS CYS D B n B 2 107 TYR 107 100 100 TYR TYR D C n B 2 108 ASP 108 100 100 ASP ASP D D n B 2 109 GLY 109 100 100 GLY GLY D E n B 2 110 PHE 110 100 100 PHE PHE D F n B 2 111 ASP 111 101 101 ASP ASP D . n B 2 112 ILE 112 102 102 ILE ILE D . n B 2 113 TRP 113 103 103 TRP TRP D . n B 2 114 GLY 114 104 104 GLY GLY D . n B 2 115 GLN 115 105 105 GLN GLN D . n B 2 116 GLY 116 106 106 GLY GLY D . n B 2 117 THR 117 107 107 THR THR D . n B 2 118 MET 118 108 108 MET MET D . n B 2 119 VAL 119 109 109 VAL VAL D . n B 2 120 THR 120 110 110 THR THR D . n B 2 121 VAL 121 111 111 VAL VAL D . n B 2 122 SER 122 112 112 SER SER D . n B 2 123 SER 123 113 113 SER SER D . n B 2 124 ALA 124 114 114 ALA ALA D . n B 2 125 SER 125 115 115 SER SER D . n B 2 126 THR 126 116 116 THR THR D . n B 2 127 LYS 127 117 117 LYS LYS D . n B 2 128 GLY 128 118 118 GLY GLY D . n B 2 129 PRO 129 119 119 PRO PRO D . n B 2 130 SER 130 120 120 SER SER D . n B 2 131 VAL 131 121 121 VAL VAL D . n B 2 132 PHE 132 122 122 PHE PHE D . n B 2 133 PRO 133 123 123 PRO PRO D . n B 2 134 LEU 134 124 124 LEU LEU D . n B 2 135 ALA 135 125 125 ALA ALA D . n B 2 136 PRO 136 126 126 PRO PRO D . n B 2 137 SER 137 127 127 SER SER D . n B 2 138 SER 138 128 ? ? ? D . n B 2 139 LYS 139 129 ? ? ? D . n B 2 140 SER 140 130 ? ? ? D . n B 2 141 THR 141 131 ? ? ? D . n B 2 142 SER 142 132 ? ? ? D . n B 2 143 GLY 143 133 ? ? ? D . n B 2 144 GLY 144 134 ? ? ? D . n B 2 145 THR 145 135 135 THR THR D . n B 2 146 ALA 146 136 136 ALA ALA D . n B 2 147 ALA 147 137 137 ALA ALA D . n B 2 148 LEU 148 138 138 LEU LEU D . n B 2 149 GLY 149 139 139 GLY GLY D . n B 2 150 CYS 150 140 140 CYS CYS D . n B 2 151 LEU 151 141 141 LEU LEU D . n B 2 152 VAL 152 142 142 VAL VAL D . n B 2 153 LYS 153 143 143 LYS LYS D . n B 2 154 ASP 154 144 144 ASP ASP D . n B 2 155 TYR 155 145 145 TYR TYR D . n B 2 156 PHE 156 146 146 PHE PHE D . n B 2 157 PRO 157 147 147 PRO PRO D . n B 2 158 GLU 158 148 148 GLU GLU D . n B 2 159 PRO 159 149 149 PRO PRO D . n B 2 160 VAL 160 150 150 VAL VAL D . n B 2 161 THR 161 151 151 THR THR D . n B 2 162 VAL 162 152 152 VAL VAL D . n B 2 163 SER 163 153 153 SER SER D . n B 2 164 TRP 164 154 154 TRP TRP D . n B 2 165 ASN 165 155 155 ASN ASN D . n B 2 166 SER 166 156 156 SER SER D . n B 2 167 GLY 167 157 157 GLY GLY D . n B 2 168 ALA 168 158 158 ALA ALA D . n B 2 169 LEU 169 159 159 LEU LEU D . n B 2 170 THR 170 160 160 THR THR D . n B 2 171 SER 171 161 161 SER SER D . n B 2 172 GLY 172 162 162 GLY GLY D . n B 2 173 VAL 173 163 163 VAL VAL D . n B 2 174 HIS 174 164 164 HIS HIS D . n B 2 175 THR 175 165 165 THR THR D . n B 2 176 PHE 176 166 166 PHE PHE D . n B 2 177 PRO 177 167 167 PRO PRO D . n B 2 178 ALA 178 168 168 ALA ALA D . n B 2 179 VAL 179 169 169 VAL VAL D . n B 2 180 LEU 180 170 170 LEU LEU D . n B 2 181 GLN 181 171 171 GLN GLN D . n B 2 182 SER 182 172 172 SER SER D . n B 2 183 SER 183 173 173 SER SER D . n B 2 184 GLY 184 174 174 GLY GLY D . n B 2 185 LEU 185 175 175 LEU LEU D . n B 2 186 TYR 186 176 176 TYR TYR D . n B 2 187 SER 187 177 177 SER SER D . n B 2 188 LEU 188 178 178 LEU LEU D . n B 2 189 SER 189 179 179 SER SER D . n B 2 190 SER 190 180 180 SER SER D . n B 2 191 VAL 191 181 181 VAL VAL D . n B 2 192 VAL 192 182 182 VAL VAL D . n B 2 193 THR 193 183 183 THR THR D . n B 2 194 VAL 194 184 184 VAL VAL D . n B 2 195 PRO 195 185 185 PRO PRO D . n B 2 196 SER 196 186 186 SER SER D . n B 2 197 SER 197 187 187 SER SER D . n B 2 198 SER 198 188 188 SER SER D . n B 2 199 LEU 199 189 189 LEU LEU D . n B 2 200 GLY 200 190 190 GLY GLY D . n B 2 201 THR 201 191 191 THR THR D . n B 2 202 GLN 202 192 192 GLN GLN D . n B 2 203 THR 203 193 193 THR THR D . n B 2 204 TYR 204 194 194 TYR TYR D . n B 2 205 ILE 205 195 195 ILE ILE D . n B 2 206 CYS 206 196 196 CYS CYS D . n B 2 207 ASN 207 197 197 ASN ASN D . n B 2 208 VAL 208 198 198 VAL VAL D . n B 2 209 ASN 209 199 199 ASN ASN D . n B 2 210 HIS 210 200 200 HIS HIS D . n B 2 211 LYS 211 201 201 LYS LYS D . n B 2 212 PRO 212 202 202 PRO PRO D . n B 2 213 SER 213 203 203 SER SER D . n B 2 214 ASN 214 204 204 ASN ASN D . n B 2 215 THR 215 205 205 THR THR D . n B 2 216 LYS 216 206 206 LYS LYS D . n B 2 217 VAL 217 207 207 VAL VAL D . n B 2 218 ASP 218 208 208 ASP ASP D . n B 2 219 LYS 219 209 209 LYS LYS D . n B 2 220 LYS 220 210 210 LYS LYS D . n B 2 221 VAL 221 211 211 VAL VAL D . n B 2 222 GLU 222 212 212 GLU GLU D . n B 2 223 PRO 223 213 213 PRO PRO D . n B 2 224 LYS 224 214 ? ? ? D . n B 2 225 SER 225 215 ? ? ? D . n B 2 226 CYS 226 216 ? ? ? D . n B 2 227 ASP 227 217 ? ? ? D . n B 2 228 LYS 228 218 ? ? ? D . n C 3 1 GLU 1 1 1 GLU GLU E . n C 3 2 ILE 2 2 2 ILE ILE E . n C 3 3 VAL 3 3 3 VAL VAL E . n C 3 4 LEU 4 4 4 LEU LEU E . n C 3 5 THR 5 5 5 THR THR E . n C 3 6 GLN 6 6 6 GLN GLN E . n C 3 7 SER 7 7 7 SER SER E . n C 3 8 PRO 8 8 8 PRO PRO E . n C 3 9 GLY 9 9 9 GLY GLY E . n C 3 10 THR 10 10 10 THR THR E . n C 3 11 LEU 11 11 11 LEU LEU E . n C 3 12 SER 12 12 12 SER SER E . n C 3 13 LEU 13 13 13 LEU LEU E . n C 3 14 SER 14 14 14 SER SER E . n C 3 15 PRO 15 15 15 PRO PRO E . n C 3 16 GLY 16 16 16 GLY GLY E . n C 3 17 GLU 17 17 17 GLU GLU E . n C 3 18 ARG 18 18 18 ARG ARG E . n C 3 19 ALA 19 19 19 ALA ALA E . n C 3 20 THR 20 20 20 THR THR E . n C 3 21 LEU 21 21 21 LEU LEU E . n C 3 22 SER 22 22 22 SER SER E . n C 3 23 CYS 23 23 23 CYS CYS E . n C 3 24 ARG 24 24 24 ARG ARG E . n C 3 25 ALA 25 25 25 ALA ALA E . n C 3 26 SER 26 26 26 SER SER E . n C 3 27 GLN 27 27 27 GLN GLN E . n C 3 28 SER 28 27 27 SER SER E A n C 3 29 VAL 29 28 28 VAL VAL E . n C 3 30 SER 30 29 29 SER SER E . n C 3 31 SER 31 30 30 SER SER E . n C 3 32 SER 32 31 31 SER SER E . n C 3 33 TYR 33 32 32 TYR TYR E . n C 3 34 LEU 34 33 33 LEU LEU E . n C 3 35 ALA 35 34 34 ALA ALA E . n C 3 36 TRP 36 35 35 TRP TRP E . n C 3 37 TYR 37 36 36 TYR TYR E . n C 3 38 GLN 38 37 37 GLN GLN E . n C 3 39 GLN 39 38 38 GLN GLN E . n C 3 40 LYS 40 39 39 LYS LYS E . n C 3 41 PRO 41 40 40 PRO PRO E . n C 3 42 GLY 42 41 41 GLY GLY E . n C 3 43 GLN 43 42 42 GLN GLN E . n C 3 44 ALA 44 43 43 ALA ALA E . n C 3 45 PRO 45 44 44 PRO PRO E . n C 3 46 ARG 46 45 45 ARG ARG E . n C 3 47 LEU 47 46 46 LEU LEU E . n C 3 48 LEU 48 47 47 LEU LEU E . n C 3 49 ILE 49 48 48 ILE ILE E . n C 3 50 TYR 50 49 49 TYR TYR E . n C 3 51 SER 51 50 50 SER SER E . n C 3 52 ALA 52 51 51 ALA ALA E . n C 3 53 SER 53 52 52 SER SER E . n C 3 54 SER 54 53 53 SER SER E . n C 3 55 ARG 55 54 54 ARG ARG E . n C 3 56 ALA 56 55 55 ALA ALA E . n C 3 57 THR 57 56 56 THR THR E . n C 3 58 GLY 58 57 57 GLY GLY E . n C 3 59 ILE 59 58 58 ILE ILE E . n C 3 60 PRO 60 59 59 PRO PRO E . n C 3 61 ASP 61 60 60 ASP ASP E . n C 3 62 ARG 62 61 61 ARG ARG E . n C 3 63 PHE 63 62 62 PHE PHE E . n C 3 64 SER 64 63 63 SER SER E . n C 3 65 GLY 65 64 64 GLY GLY E . n C 3 66 SER 66 65 65 SER SER E . n C 3 67 GLY 67 66 66 GLY GLY E . n C 3 68 SER 68 67 67 SER SER E . n C 3 69 GLY 69 68 68 GLY GLY E . n C 3 70 THR 70 69 69 THR THR E . n C 3 71 ASP 71 70 70 ASP ASP E . n C 3 72 PHE 72 71 71 PHE PHE E . n C 3 73 THR 73 72 72 THR THR E . n C 3 74 LEU 74 73 73 LEU LEU E . n C 3 75 THR 75 74 74 THR THR E . n C 3 76 ILE 76 75 75 ILE ILE E . n C 3 77 SER 77 76 76 SER SER E . n C 3 78 ARG 78 77 77 ARG ARG E . n C 3 79 LEU 79 78 78 LEU LEU E . n C 3 80 GLU 80 79 79 GLU GLU E . n C 3 81 PRO 81 80 80 PRO PRO E . n C 3 82 GLU 82 81 81 GLU GLU E . n C 3 83 ASP 83 82 82 ASP ASP E . n C 3 84 PHE 84 83 83 PHE PHE E . n C 3 85 ALA 85 84 84 ALA ALA E . n C 3 86 VAL 86 85 85 VAL VAL E . n C 3 87 TYR 87 86 86 TYR TYR E . n C 3 88 PHE 88 87 87 PHE PHE E . n C 3 89 CYS 89 88 88 CYS CYS E . n C 3 90 GLN 90 89 89 GLN GLN E . n C 3 91 GLN 91 90 90 GLN GLN E . n C 3 92 TYR 92 91 91 TYR TYR E . n C 3 93 GLY 93 92 92 GLY GLY E . n C 3 94 THR 94 93 93 THR THR E . n C 3 95 SER 95 94 94 SER SER E . n C 3 96 PRO 96 95 95 PRO PRO E . n C 3 97 TRP 97 96 96 TRP TRP E . n C 3 98 THR 98 97 97 THR THR E . n C 3 99 PHE 99 98 98 PHE PHE E . n C 3 100 GLY 100 99 99 GLY GLY E . n C 3 101 GLN 101 100 100 GLN GLN E . n C 3 102 GLY 102 101 101 GLY GLY E . n C 3 103 THR 103 102 102 THR THR E . n C 3 104 LYS 104 103 103 LYS LYS E . n C 3 105 VAL 105 104 104 VAL VAL E . n C 3 106 GLU 106 105 105 GLU GLU E . n C 3 107 ILE 107 106 106 ILE ILE E . n C 3 108 LYS 108 107 107 LYS LYS E . n C 3 109 ARG 109 108 108 ARG ARG E . n C 3 110 THR 110 109 109 THR THR E . n C 3 111 VAL 111 110 110 VAL VAL E . n C 3 112 ALA 112 111 111 ALA ALA E . n C 3 113 ALA 113 112 112 ALA ALA E . n C 3 114 PRO 114 113 113 PRO PRO E . n C 3 115 SER 115 114 114 SER SER E . n C 3 116 VAL 116 115 115 VAL VAL E . n C 3 117 PHE 117 116 116 PHE PHE E . n C 3 118 ILE 118 117 117 ILE ILE E . n C 3 119 PHE 119 118 118 PHE PHE E . n C 3 120 PRO 120 119 119 PRO PRO E . n C 3 121 PRO 121 120 120 PRO PRO E . n C 3 122 SER 122 121 121 SER SER E . n C 3 123 ASP 123 122 122 ASP ASP E . n C 3 124 GLU 124 123 123 GLU GLU E . n C 3 125 GLN 125 124 124 GLN GLN E . n C 3 126 LEU 126 125 125 LEU LEU E . n C 3 127 LYS 127 126 126 LYS LYS E . n C 3 128 SER 128 127 127 SER SER E . n C 3 129 GLY 129 128 128 GLY GLY E . n C 3 130 THR 130 129 129 THR THR E . n C 3 131 ALA 131 130 130 ALA ALA E . n C 3 132 SER 132 131 131 SER SER E . n C 3 133 VAL 133 132 132 VAL VAL E . n C 3 134 VAL 134 133 133 VAL VAL E . n C 3 135 CYS 135 134 134 CYS CYS E . n C 3 136 LEU 136 135 135 LEU LEU E . n C 3 137 LEU 137 136 136 LEU LEU E . n C 3 138 ASN 138 137 137 ASN ASN E . n C 3 139 ASN 139 138 138 ASN ASN E . n C 3 140 PHE 140 139 139 PHE PHE E . n C 3 141 TYR 141 140 140 TYR TYR E . n C 3 142 PRO 142 141 141 PRO PRO E . n C 3 143 ARG 143 142 142 ARG ARG E . n C 3 144 GLU 144 143 143 GLU GLU E . n C 3 145 ALA 145 144 144 ALA ALA E . n C 3 146 LYS 146 145 145 LYS LYS E . n C 3 147 VAL 147 146 146 VAL VAL E . n C 3 148 GLN 148 147 147 GLN GLN E . n C 3 149 TRP 149 148 148 TRP TRP E . n C 3 150 LYS 150 149 149 LYS LYS E . n C 3 151 VAL 151 150 150 VAL VAL E . n C 3 152 ASP 152 151 151 ASP ASP E . n C 3 153 ASN 153 152 152 ASN ASN E . n C 3 154 ALA 154 153 153 ALA ALA E . n C 3 155 LEU 155 154 154 LEU LEU E . n C 3 156 GLN 156 155 155 GLN GLN E . n C 3 157 SER 157 156 156 SER SER E . n C 3 158 GLY 158 157 157 GLY GLY E . n C 3 159 ASN 159 158 158 ASN ASN E . n C 3 160 SER 160 159 159 SER SER E . n C 3 161 GLN 161 160 160 GLN GLN E . n C 3 162 GLU 162 161 161 GLU GLU E . n C 3 163 SER 163 162 162 SER SER E . n C 3 164 VAL 164 163 163 VAL VAL E . n C 3 165 THR 165 164 164 THR THR E . n C 3 166 GLU 166 165 165 GLU GLU E . n C 3 167 GLN 167 166 166 GLN GLN E . n C 3 168 ASP 168 167 167 ASP ASP E . n C 3 169 SER 169 168 168 SER SER E . n C 3 170 LYS 170 169 169 LYS LYS E . n C 3 171 ASP 171 170 170 ASP ASP E . n C 3 172 SER 172 171 171 SER SER E . n C 3 173 THR 173 172 172 THR THR E . n C 3 174 TYR 174 173 173 TYR TYR E . n C 3 175 SER 175 174 174 SER SER E . n C 3 176 LEU 176 175 175 LEU LEU E . n C 3 177 SER 177 176 176 SER SER E . n C 3 178 SER 178 177 177 SER SER E . n C 3 179 THR 179 178 178 THR THR E . n C 3 180 LEU 180 179 179 LEU LEU E . n C 3 181 THR 181 180 180 THR THR E . n C 3 182 LEU 182 181 181 LEU LEU E . n C 3 183 SER 183 182 182 SER SER E . n C 3 184 LYS 184 183 183 LYS LYS E . n C 3 185 ALA 185 184 184 ALA ALA E . n C 3 186 ASP 186 185 185 ASP ASP E . n C 3 187 TYR 187 186 186 TYR TYR E . n C 3 188 GLU 188 187 187 GLU GLU E . n C 3 189 LYS 189 188 188 LYS LYS E . n C 3 190 HIS 190 189 189 HIS HIS E . n C 3 191 LYS 191 190 190 LYS LYS E . n C 3 192 VAL 192 191 191 VAL VAL E . n C 3 193 TYR 193 192 192 TYR TYR E . n C 3 194 ALA 194 193 193 ALA ALA E . n C 3 195 CYS 195 194 194 CYS CYS E . n C 3 196 GLU 196 195 195 GLU GLU E . n C 3 197 VAL 197 196 196 VAL VAL E . n C 3 198 THR 198 197 197 THR THR E . n C 3 199 HIS 199 198 198 HIS HIS E . n C 3 200 GLN 200 199 199 GLN GLN E . n C 3 201 GLY 201 200 200 GLY GLY E . n C 3 202 LEU 202 201 201 LEU LEU E . n C 3 203 SER 203 202 202 SER SER E . n C 3 204 SER 204 203 203 SER SER E . n C 3 205 PRO 205 204 204 PRO PRO E . n C 3 206 VAL 206 205 205 VAL VAL E . n C 3 207 THR 207 206 206 THR THR E . n C 3 208 LYS 208 207 207 LYS LYS E . n C 3 209 SER 209 208 208 SER SER E . n C 3 210 PHE 210 209 209 PHE PHE E . n C 3 211 ASN 211 210 210 ASN ASN E . n C 3 212 ARG 212 211 211 ARG ARG E . n C 3 213 GLY 213 212 212 GLY GLY E . n C 3 214 GLU 214 213 ? ? ? E . n C 3 215 CYS 215 214 ? ? ? E . n # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 4 NAG 1 A NAG 1 C NAG 2555 n D 4 NAG 2 A NAG 2 C NAG 2556 n D 4 BMA 3 A BMA 3 C BMA 2557 n D 4 MAN 4 A MAN 4 C MAN 2558 n D 4 MAN 5 A MAN 5 C MAN 2559 n E 5 NAG 1 B NAG 1 D NAG 214 n E 5 NAG 2 B NAG 2 D NAG 215 n E 5 BMA 3 B BMA 3 D BMA 216 n # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id D _pdbx_unobs_or_zero_occ_atoms.auth_comp_id SER _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 113 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id OG _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id B _pdbx_unobs_or_zero_occ_atoms.label_comp_id SER _pdbx_unobs_or_zero_occ_atoms.label_seq_id 123 _pdbx_unobs_or_zero_occ_atoms.label_atom_id OG # _software.citation_id ? _software.classification refinement _software.compiler_name ? _software.compiler_version ? _software.contact_author ? _software.contact_author_email ? _software.date ? _software.description ? _software.dependencies ? _software.hardware ? _software.language ? _software.location ? _software.mods ? _software.name PHENIX _software.os ? _software.os_version ? _software.type ? _software.version 1.19_4092: _software.pdbx_ordinal 1 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7LRS _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LRS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7LRS _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7LRS _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high . _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 5030 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.617 ? 6847 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 5.478 ? 741 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.045 ? 786 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 869 ? f_plane_restr ? ? # _struct.entry_id 7LRS _struct.title 'Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7LRS _struct_keywords.text 'SARS-CoV-2, Receptor-binding domain, antibody, VIRAL PROTEIN-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;ITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIA PGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFP LQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP ; 332 2 PDB 7LRS 7LRS ? 2 ? 1 3 PDB 7LRS 7LRS ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7LRS C 1 ? 196 ? P0DTC2 332 ? 527 ? 332 527 2 2 7LRS D 1 ? 228 ? 7LRS 1 ? 218 ? 1 218 3 3 7LRS E 1 ? 215 ? 7LRS 1 ? 214 ? 1 214 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5550 ? 1 MORE -12 ? 1 'SSA (A^2)' 33380 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 6 ? ASN A 12 ? PRO C 337 ASN C 343 1 ? 7 HELX_P HELX_P2 AA2 SER A 35 ? SER A 40 ? SER C 366 SER C 371 1 ? 6 HELX_P HELX_P3 AA3 ARG B 87 ? THR B 91 ? ARG D 83 THR D 87 5 ? 5 HELX_P HELX_P4 AA4 HIS C 199 ? SER C 203 ? HIS E 198 SER E 202 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 30 SG ? ? C CYS 336 C CYS 361 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf2 disulf ? ? A CYS 48 SG ? ? ? 1_555 A CYS 101 SG ? ? C CYS 379 C CYS 432 1_555 ? ? ? ? ? ? ? 2.034 ? ? disulf3 disulf ? ? A CYS 60 SG ? ? ? 1_555 A CYS 194 SG ? ? C CYS 391 C CYS 525 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf4 disulf ? ? A CYS 149 SG ? ? ? 1_555 A CYS 157 SG ? ? C CYS 480 C CYS 488 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf5 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? D CYS 22 D CYS 92 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf6 disulf ? ? B CYS 101 SG ? ? ? 1_555 B CYS 106 SG ? B D CYS 97 D CYS 100 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf7 disulf ? ? B CYS 150 SG ? ? ? 1_555 B CYS 206 SG ? ? D CYS 140 D CYS 196 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf8 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 89 SG ? ? E CYS 23 E CYS 88 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf9 disulf ? ? C CYS 135 SG ? ? ? 1_555 C CYS 195 SG ? ? E CYS 134 E CYS 194 1_555 ? ? ? ? ? ? ? 2.035 ? ? covale1 covale one ? A ASN 12 ND2 ? ? ? 1_555 D NAG . C1 ? ? C ASN 343 A NAG 1 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation covale2 covale one ? B ASN 100 ND2 ? ? ? 1_555 E NAG . C1 ? ? D ASN 96 B NAG 1 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation covale3 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? A NAG 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.443 ? ? covale4 covale both ? D NAG . O4 ? ? ? 1_555 D BMA . C1 ? ? A NAG 2 A BMA 3 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale5 covale both ? D BMA . O3 ? ? ? 1_555 D MAN . C1 ? ? A BMA 3 A MAN 4 1_555 ? ? ? ? ? ? ? 1.446 ? ? covale6 covale both ? D BMA . O6 ? ? ? 1_555 D MAN . C1 ? ? A BMA 3 A MAN 5 1_555 ? ? ? ? ? ? ? 1.449 ? ? covale7 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale8 covale both ? E NAG . O4 ? ? ? 1_555 E BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.443 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG D . ? ASN A 12 ? NAG A 1 ? 1_555 ASN C 343 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 NAG E . ? ASN B 100 ? NAG B 1 ? 1_555 ASN D 96 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 3 CYS A 5 ? CYS A 30 ? CYS C 336 ? 1_555 CYS C 361 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 48 ? CYS A 101 ? CYS C 379 ? 1_555 CYS C 432 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS A 60 ? CYS A 194 ? CYS C 391 ? 1_555 CYS C 525 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS A 149 ? CYS A 157 ? CYS C 480 ? 1_555 CYS C 488 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS B 22 ? CYS B 96 ? CYS D 22 ? 1_555 CYS D 92 ? 1_555 SG SG . . . None 'Disulfide bridge' 8 CYS B 101 ? CYS B 106 ? CYS D 97 ? 1_555 CYS D 100 B 1_555 SG SG . . . None 'Disulfide bridge' 9 CYS B 150 ? CYS B 206 ? CYS D 140 ? 1_555 CYS D 196 ? 1_555 SG SG . . . None 'Disulfide bridge' 10 CYS C 23 ? CYS C 89 ? CYS E 23 ? 1_555 CYS E 88 ? 1_555 SG SG . . . None 'Disulfide bridge' 11 CYS C 135 ? CYS C 195 ? CYS E 134 ? 1_555 CYS E 194 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 95 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 94 _struct_mon_prot_cis.auth_asym_id E _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 96 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 95 _struct_mon_prot_cis.pdbx_auth_asym_id_2 E _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.31 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? AA3 ? 4 ? AA4 ? 2 ? AA5 ? 3 ? AA6 ? 2 ? AA7 ? 2 ? AA8 ? 2 ? AA9 ? 4 ? AB1 ? 4 ? AB2 ? 2 ? AB3 ? 2 ? AB4 ? 2 ? AB5 ? 3 ? AB6 ? 4 ? AB7 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA4 1 2 ? parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel AA8 1 2 ? anti-parallel AA9 1 2 ? anti-parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AB1 1 2 ? anti-parallel AB1 2 3 ? anti-parallel AB1 3 4 ? anti-parallel AB2 1 2 ? anti-parallel AB3 1 2 ? parallel AB4 1 2 ? anti-parallel AB5 1 2 ? anti-parallel AB5 2 3 ? anti-parallel AB6 1 2 ? anti-parallel AB6 2 3 ? anti-parallel AB6 3 4 ? anti-parallel AB7 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 26 ? ILE A 27 ? ARG C 357 ILE C 358 AA1 2 VAL A 64 ? ILE A 71 ? VAL C 395 ILE C 402 AA1 3 TYR A 177 ? LEU A 182 ? TYR C 508 LEU C 513 AA1 4 VAL A 102 ? TRP A 105 ? VAL C 433 TRP C 436 AA2 1 LEU A 121 ? ARG A 123 ? LEU C 452 ARG C 454 AA2 2 LEU A 161 ? SER A 163 ? LEU C 492 SER C 494 AA3 1 GLN B 3 ? GLN B 6 ? GLN D 3 GLN D 6 AA3 2 VAL B 20 ? SER B 25 ? VAL D 20 SER D 25 AA3 3 TYR B 80 ? LEU B 83 ? TYR D 79 LEU D 82 AA3 4 VAL B 68 ? THR B 69 ? VAL D 67 THR D 68 AA4 1 GLU B 10 ? LYS B 12 ? GLU D 10 LYS D 12 AA4 2 VAL B 119 ? VAL B 121 ? VAL D 109 VAL D 111 AA5 1 ALA B 33 ? TRP B 36 ? ALA D 33 TRP D 36 AA5 2 GLY B 49 ? VAL B 52 ? GLY D 49 VAL D 52 AA5 3 THR B 58 ? TYR B 60 ? THR D 57 TYR D 59 AA6 1 ARG B 38 ? GLN B 39 ? ARG D 38 GLN D 39 AA6 2 VAL B 93 ? TYR B 94 ? VAL D 89 TYR D 90 AA7 1 ALA B 97 ? ALA B 98 ? ALA D 93 ALA D 94 AA7 2 ILE B 112 ? TRP B 113 ? ILE D 102 TRP D 103 AA8 1 CYS B 101 ? SER B 102 ? CYS D 97 SER D 98 AA8 2 VAL B 105 A CYS B 106 B VAL D 100 CYS D 100 AA9 1 SER B 130 ? LEU B 134 ? SER D 120 LEU D 124 AA9 2 ALA B 147 ? TYR B 155 ? ALA D 137 TYR D 145 AA9 3 TYR B 186 ? THR B 193 ? TYR D 176 THR D 183 AA9 4 HIS B 174 ? THR B 175 ? HIS D 164 THR D 165 AB1 1 SER B 130 ? LEU B 134 ? SER D 120 LEU D 124 AB1 2 ALA B 147 ? TYR B 155 ? ALA D 137 TYR D 145 AB1 3 TYR B 186 ? THR B 193 ? TYR D 176 THR D 183 AB1 4 VAL B 179 ? LEU B 180 ? VAL D 169 LEU D 170 AB2 1 THR B 161 ? VAL B 162 ? THR D 151 VAL D 152 AB2 2 VAL B 208 ? ASN B 209 ? VAL D 198 ASN D 199 AB3 1 THR C 10 ? SER C 12 ? THR E 10 SER E 12 AB3 2 LYS C 104 ? GLU C 106 ? LYS E 103 GLU E 105 AB4 1 THR C 20 ? SER C 22 ? THR E 20 SER E 22 AB4 2 THR C 73 ? THR C 75 ? THR E 72 THR E 74 AB5 1 ARG C 46 ? TYR C 50 ? ARG E 45 TYR E 49 AB5 2 LEU C 34 ? GLN C 39 ? LEU E 33 GLN E 38 AB5 3 VAL C 86 ? GLN C 91 ? VAL E 85 GLN E 90 AB6 1 SER C 115 ? PHE C 119 ? SER E 114 PHE E 118 AB6 2 VAL C 133 ? PHE C 140 ? VAL E 132 PHE E 139 AB6 3 TYR C 174 ? LEU C 180 ? TYR E 173 LEU E 179 AB6 4 SER C 160 ? VAL C 164 ? SER E 159 VAL E 163 AB7 1 LYS C 146 ? TRP C 149 ? LYS E 145 TRP E 148 AB7 2 CYS C 195 ? THR C 198 ? CYS E 194 THR E 197 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 27 ? N ILE C 358 O VAL A 64 ? O VAL C 395 AA1 2 3 N ASP A 67 ? N ASP C 398 O VAL A 181 ? O VAL C 512 AA1 3 4 O VAL A 180 ? O VAL C 511 N ILE A 103 ? N ILE C 434 AA2 1 2 N TYR A 122 ? N TYR C 453 O GLN A 162 ? O GLN C 493 AA3 1 2 N VAL B 5 ? N VAL D 5 O LYS B 23 ? O LYS D 23 AA3 2 3 N VAL B 20 ? N VAL D 20 O MET B 81 ? O MET D 80 AA3 3 4 O GLU B 82 ? O GLU D 81 N THR B 69 ? N THR D 68 AA4 1 2 N LYS B 12 ? N LYS D 12 O THR B 120 ? O THR D 110 AA5 1 2 N TRP B 36 ? N TRP D 36 O GLY B 49 ? O GLY D 49 AA5 2 3 N TRP B 50 ? N TRP D 50 O ASN B 59 ? O ASN D 58 AA6 1 2 N GLN B 39 ? N GLN D 39 O VAL B 93 ? O VAL D 89 AA7 1 2 N ALA B 98 ? N ALA D 94 O ILE B 112 ? O ILE D 102 AA8 1 2 N SER B 102 ? N SER D 98 O VAL B 105 A O VAL D 100 AA9 1 2 N PHE B 132 ? N PHE D 122 O LEU B 151 ? O LEU D 141 AA9 2 3 N LEU B 148 ? N LEU D 138 O VAL B 192 ? O VAL D 182 AA9 3 4 O VAL B 191 ? O VAL D 181 N HIS B 174 ? N HIS D 164 AB1 1 2 N PHE B 132 ? N PHE D 122 O LEU B 151 ? O LEU D 141 AB1 2 3 N LEU B 148 ? N LEU D 138 O VAL B 192 ? O VAL D 182 AB1 3 4 O SER B 187 ? O SER D 177 N VAL B 179 ? N VAL D 169 AB2 1 2 N THR B 161 ? N THR D 151 O ASN B 209 ? O ASN D 199 AB3 1 2 N LEU C 11 ? N LEU E 11 O LYS C 104 ? O LYS E 103 AB4 1 2 N LEU C 21 ? N LEU E 21 O LEU C 74 ? O LEU E 73 AB5 1 2 O ARG C 46 ? O ARG E 45 N GLN C 38 ? N GLN E 37 AB5 2 3 N TYR C 37 ? N TYR E 36 O PHE C 88 ? O PHE E 87 AB6 1 2 N PHE C 119 ? N PHE E 118 O VAL C 134 ? O VAL E 133 AB6 2 3 N LEU C 137 ? N LEU E 136 O LEU C 176 ? O LEU E 175 AB6 3 4 O THR C 179 ? O THR E 178 N GLN C 161 ? N GLN E 160 AB7 1 2 N GLN C 148 ? N GLN E 147 O GLU C 196 ? O GLU E 195 # _pdbx_entry_details.entry_id 7LRS _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 E _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 82 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OH _pdbx_validate_close_contact.auth_asym_id_2 E _pdbx_validate_close_contact.auth_comp_id_2 TYR _pdbx_validate_close_contact.auth_seq_id_2 86 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR C 333 ? ? 46.50 -155.28 2 1 ALA C 348 ? ? 178.18 175.01 3 1 TYR C 365 ? ? -82.68 49.80 4 1 TYR C 380 ? ? -46.73 152.45 5 1 GLN C 414 ? ? 67.32 148.90 6 1 ASN C 487 ? ? 47.23 26.78 7 1 SER C 514 ? ? -160.40 -169.32 8 1 LYS D 12 ? ? -127.59 -168.84 9 1 SER D 54 ? ? 73.56 139.78 10 1 ARG D 66 ? ? 68.70 -3.17 11 1 ASP D 72 ? ? 67.01 148.57 12 1 ALA D 88 ? ? -160.44 -169.63 13 1 ASN D 99 ? ? 58.87 -94.95 14 1 ASN D 155 ? ? 67.89 -3.50 15 1 GLN D 192 ? ? 67.21 -172.97 16 1 LYS D 201 ? ? -143.03 -34.10 17 1 ASN D 204 ? ? -100.59 67.67 18 1 ALA E 51 ? ? 63.46 -70.66 19 1 SER E 53 ? ? -167.87 -169.03 20 1 ALA E 55 ? ? -78.93 -167.27 21 1 ALA E 84 ? ? -162.62 -169.18 22 1 VAL E 110 ? ? 35.10 97.64 23 1 ASN E 138 ? ? 60.37 64.95 24 1 SER E 202 ? ? 55.33 -111.32 # _em_3d_fitting.entry_id 7LRS _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 7KMS _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 7KMS # _em_3d_reconstruction.entry_id 7LRS _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.num_particles 123016 _em_3d_reconstruction.resolution 3.89 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details '100 mM HEPES, pH 7.4, 150 mM NaCl' _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'The complex was prepared by mixing SARS-CoV-2 spike protein and Fab fragment of antibody A789-58.1 at a molar ratio of 1:3.6.' _em_entity_assembly.name 'SARS-CoV-2 spike in complex with neutralizing antibody A789-58.1' _em_entity_assembly.source 'MULTIPLE SOURCES' _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list '1, 2, 3' _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7LRS _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 100 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 2100 _em_imaging.nominal_defocus_min 1100 _em_imaging.nominal_magnification 105000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 277 _em_vitrification.cryogen_name ETHANE _em_vitrification.details 'Blot for 1.5 seconds before plugging.' _em_vitrification.humidity 95 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 7LRS _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7LRS _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 D SER 128 ? B SER 138 2 1 Y 1 D LYS 129 ? B LYS 139 3 1 Y 1 D SER 130 ? B SER 140 4 1 Y 1 D THR 131 ? B THR 141 5 1 Y 1 D SER 132 ? B SER 142 6 1 Y 1 D GLY 133 ? B GLY 143 7 1 Y 1 D GLY 134 ? B GLY 144 8 1 Y 1 D LYS 214 ? B LYS 224 9 1 Y 1 D SER 215 ? B SER 225 10 1 Y 1 D CYS 216 ? B CYS 226 11 1 Y 1 D ASP 217 ? B ASP 227 12 1 Y 1 D LYS 218 ? B LYS 228 13 1 Y 1 E GLU 213 ? C GLU 214 14 1 Y 1 E CYS 214 ? C CYS 215 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BMA C1 C N R 74 BMA C2 C N S 75 BMA C3 C N S 76 BMA C4 C N S 77 BMA C5 C N R 78 BMA C6 C N N 79 BMA O1 O N N 80 BMA O2 O N N 81 BMA O3 O N N 82 BMA O4 O N N 83 BMA O5 O N N 84 BMA O6 O N N 85 BMA H1 H N N 86 BMA H2 H N N 87 BMA H3 H N N 88 BMA H4 H N N 89 BMA H5 H N N 90 BMA H61 H N N 91 BMA H62 H N N 92 BMA HO1 H N N 93 BMA HO2 H N N 94 BMA HO3 H N N 95 BMA HO4 H N N 96 BMA HO6 H N N 97 CYS N N N N 98 CYS CA C N R 99 CYS C C N N 100 CYS O O N N 101 CYS CB C N N 102 CYS SG S N N 103 CYS OXT O N N 104 CYS H H N N 105 CYS H2 H N N 106 CYS HA H N N 107 CYS HB2 H N N 108 CYS HB3 H N N 109 CYS HG H N N 110 CYS HXT H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 ILE N N N N 182 ILE CA C N S 183 ILE C C N N 184 ILE O O N N 185 ILE CB C N S 186 ILE CG1 C N N 187 ILE CG2 C N N 188 ILE CD1 C N N 189 ILE OXT O N N 190 ILE H H N N 191 ILE H2 H N N 192 ILE HA H N N 193 ILE HB H N N 194 ILE HG12 H N N 195 ILE HG13 H N N 196 ILE HG21 H N N 197 ILE HG22 H N N 198 ILE HG23 H N N 199 ILE HD11 H N N 200 ILE HD12 H N N 201 ILE HD13 H N N 202 ILE HXT H N N 203 LEU N N N N 204 LEU CA C N S 205 LEU C C N N 206 LEU O O N N 207 LEU CB C N N 208 LEU CG C N N 209 LEU CD1 C N N 210 LEU CD2 C N N 211 LEU OXT O N N 212 LEU H H N N 213 LEU H2 H N N 214 LEU HA H N N 215 LEU HB2 H N N 216 LEU HB3 H N N 217 LEU HG H N N 218 LEU HD11 H N N 219 LEU HD12 H N N 220 LEU HD13 H N N 221 LEU HD21 H N N 222 LEU HD22 H N N 223 LEU HD23 H N N 224 LEU HXT H N N 225 LYS N N N N 226 LYS CA C N S 227 LYS C C N N 228 LYS O O N N 229 LYS CB C N N 230 LYS CG C N N 231 LYS CD C N N 232 LYS CE C N N 233 LYS NZ N N N 234 LYS OXT O N N 235 LYS H H N N 236 LYS H2 H N N 237 LYS HA H N N 238 LYS HB2 H N N 239 LYS HB3 H N N 240 LYS HG2 H N N 241 LYS HG3 H N N 242 LYS HD2 H N N 243 LYS HD3 H N N 244 LYS HE2 H N N 245 LYS HE3 H N N 246 LYS HZ1 H N N 247 LYS HZ2 H N N 248 LYS HZ3 H N N 249 LYS HXT H N N 250 MAN C1 C N S 251 MAN C2 C N S 252 MAN C3 C N S 253 MAN C4 C N S 254 MAN C5 C N R 255 MAN C6 C N N 256 MAN O1 O N N 257 MAN O2 O N N 258 MAN O3 O N N 259 MAN O4 O N N 260 MAN O5 O N N 261 MAN O6 O N N 262 MAN H1 H N N 263 MAN H2 H N N 264 MAN H3 H N N 265 MAN H4 H N N 266 MAN H5 H N N 267 MAN H61 H N N 268 MAN H62 H N N 269 MAN HO1 H N N 270 MAN HO2 H N N 271 MAN HO3 H N N 272 MAN HO4 H N N 273 MAN HO6 H N N 274 MET N N N N 275 MET CA C N S 276 MET C C N N 277 MET O O N N 278 MET CB C N N 279 MET CG C N N 280 MET SD S N N 281 MET CE C N N 282 MET OXT O N N 283 MET H H N N 284 MET H2 H N N 285 MET HA H N N 286 MET HB2 H N N 287 MET HB3 H N N 288 MET HG2 H N N 289 MET HG3 H N N 290 MET HE1 H N N 291 MET HE2 H N N 292 MET HE3 H N N 293 MET HXT H N N 294 NAG C1 C N R 295 NAG C2 C N R 296 NAG C3 C N R 297 NAG C4 C N S 298 NAG C5 C N R 299 NAG C6 C N N 300 NAG C7 C N N 301 NAG C8 C N N 302 NAG N2 N N N 303 NAG O1 O N N 304 NAG O3 O N N 305 NAG O4 O N N 306 NAG O5 O N N 307 NAG O6 O N N 308 NAG O7 O N N 309 NAG H1 H N N 310 NAG H2 H N N 311 NAG H3 H N N 312 NAG H4 H N N 313 NAG H5 H N N 314 NAG H61 H N N 315 NAG H62 H N N 316 NAG H81 H N N 317 NAG H82 H N N 318 NAG H83 H N N 319 NAG HN2 H N N 320 NAG HO1 H N N 321 NAG HO3 H N N 322 NAG HO4 H N N 323 NAG HO6 H N N 324 PHE N N N N 325 PHE CA C N S 326 PHE C C N N 327 PHE O O N N 328 PHE CB C N N 329 PHE CG C Y N 330 PHE CD1 C Y N 331 PHE CD2 C Y N 332 PHE CE1 C Y N 333 PHE CE2 C Y N 334 PHE CZ C Y N 335 PHE OXT O N N 336 PHE H H N N 337 PHE H2 H N N 338 PHE HA H N N 339 PHE HB2 H N N 340 PHE HB3 H N N 341 PHE HD1 H N N 342 PHE HD2 H N N 343 PHE HE1 H N N 344 PHE HE2 H N N 345 PHE HZ H N N 346 PHE HXT H N N 347 PRO N N N N 348 PRO CA C N S 349 PRO C C N N 350 PRO O O N N 351 PRO CB C N N 352 PRO CG C N N 353 PRO CD C N N 354 PRO OXT O N N 355 PRO H H N N 356 PRO HA H N N 357 PRO HB2 H N N 358 PRO HB3 H N N 359 PRO HG2 H N N 360 PRO HG3 H N N 361 PRO HD2 H N N 362 PRO HD3 H N N 363 PRO HXT H N N 364 SER N N N N 365 SER CA C N S 366 SER C C N N 367 SER O O N N 368 SER CB C N N 369 SER OG O N N 370 SER OXT O N N 371 SER H H N N 372 SER H2 H N N 373 SER HA H N N 374 SER HB2 H N N 375 SER HB3 H N N 376 SER HG H N N 377 SER HXT H N N 378 THR N N N N 379 THR CA C N S 380 THR C C N N 381 THR O O N N 382 THR CB C N R 383 THR OG1 O N N 384 THR CG2 C N N 385 THR OXT O N N 386 THR H H N N 387 THR H2 H N N 388 THR HA H N N 389 THR HB H N N 390 THR HG1 H N N 391 THR HG21 H N N 392 THR HG22 H N N 393 THR HG23 H N N 394 THR HXT H N N 395 TRP N N N N 396 TRP CA C N S 397 TRP C C N N 398 TRP O O N N 399 TRP CB C N N 400 TRP CG C Y N 401 TRP CD1 C Y N 402 TRP CD2 C Y N 403 TRP NE1 N Y N 404 TRP CE2 C Y N 405 TRP CE3 C Y N 406 TRP CZ2 C Y N 407 TRP CZ3 C Y N 408 TRP CH2 C Y N 409 TRP OXT O N N 410 TRP H H N N 411 TRP H2 H N N 412 TRP HA H N N 413 TRP HB2 H N N 414 TRP HB3 H N N 415 TRP HD1 H N N 416 TRP HE1 H N N 417 TRP HE3 H N N 418 TRP HZ2 H N N 419 TRP HZ3 H N N 420 TRP HH2 H N N 421 TRP HXT H N N 422 TYR N N N N 423 TYR CA C N S 424 TYR C C N N 425 TYR O O N N 426 TYR CB C N N 427 TYR CG C Y N 428 TYR CD1 C Y N 429 TYR CD2 C Y N 430 TYR CE1 C Y N 431 TYR CE2 C Y N 432 TYR CZ C Y N 433 TYR OH O N N 434 TYR OXT O N N 435 TYR H H N N 436 TYR H2 H N N 437 TYR HA H N N 438 TYR HB2 H N N 439 TYR HB3 H N N 440 TYR HD1 H N N 441 TYR HD2 H N N 442 TYR HE1 H N N 443 TYR HE2 H N N 444 TYR HH H N N 445 TYR HXT H N N 446 VAL N N N N 447 VAL CA C N S 448 VAL C C N N 449 VAL O O N N 450 VAL CB C N N 451 VAL CG1 C N N 452 VAL CG2 C N N 453 VAL OXT O N N 454 VAL H H N N 455 VAL H2 H N N 456 VAL HA H N N 457 VAL HB H N N 458 VAL HG11 H N N 459 VAL HG12 H N N 460 VAL HG13 H N N 461 VAL HG21 H N N 462 VAL HG22 H N N 463 VAL HG23 H N N 464 VAL HXT H N N 465 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BMA C1 C2 sing N N 70 BMA C1 O1 sing N N 71 BMA C1 O5 sing N N 72 BMA C1 H1 sing N N 73 BMA C2 C3 sing N N 74 BMA C2 O2 sing N N 75 BMA C2 H2 sing N N 76 BMA C3 C4 sing N N 77 BMA C3 O3 sing N N 78 BMA C3 H3 sing N N 79 BMA C4 C5 sing N N 80 BMA C4 O4 sing N N 81 BMA C4 H4 sing N N 82 BMA C5 C6 sing N N 83 BMA C5 O5 sing N N 84 BMA C5 H5 sing N N 85 BMA C6 O6 sing N N 86 BMA C6 H61 sing N N 87 BMA C6 H62 sing N N 88 BMA O1 HO1 sing N N 89 BMA O2 HO2 sing N N 90 BMA O3 HO3 sing N N 91 BMA O4 HO4 sing N N 92 BMA O6 HO6 sing N N 93 CYS N CA sing N N 94 CYS N H sing N N 95 CYS N H2 sing N N 96 CYS CA C sing N N 97 CYS CA CB sing N N 98 CYS CA HA sing N N 99 CYS C O doub N N 100 CYS C OXT sing N N 101 CYS CB SG sing N N 102 CYS CB HB2 sing N N 103 CYS CB HB3 sing N N 104 CYS SG HG sing N N 105 CYS OXT HXT sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 ILE N CA sing N N 174 ILE N H sing N N 175 ILE N H2 sing N N 176 ILE CA C sing N N 177 ILE CA CB sing N N 178 ILE CA HA sing N N 179 ILE C O doub N N 180 ILE C OXT sing N N 181 ILE CB CG1 sing N N 182 ILE CB CG2 sing N N 183 ILE CB HB sing N N 184 ILE CG1 CD1 sing N N 185 ILE CG1 HG12 sing N N 186 ILE CG1 HG13 sing N N 187 ILE CG2 HG21 sing N N 188 ILE CG2 HG22 sing N N 189 ILE CG2 HG23 sing N N 190 ILE CD1 HD11 sing N N 191 ILE CD1 HD12 sing N N 192 ILE CD1 HD13 sing N N 193 ILE OXT HXT sing N N 194 LEU N CA sing N N 195 LEU N H sing N N 196 LEU N H2 sing N N 197 LEU CA C sing N N 198 LEU CA CB sing N N 199 LEU CA HA sing N N 200 LEU C O doub N N 201 LEU C OXT sing N N 202 LEU CB CG sing N N 203 LEU CB HB2 sing N N 204 LEU CB HB3 sing N N 205 LEU CG CD1 sing N N 206 LEU CG CD2 sing N N 207 LEU CG HG sing N N 208 LEU CD1 HD11 sing N N 209 LEU CD1 HD12 sing N N 210 LEU CD1 HD13 sing N N 211 LEU CD2 HD21 sing N N 212 LEU CD2 HD22 sing N N 213 LEU CD2 HD23 sing N N 214 LEU OXT HXT sing N N 215 LYS N CA sing N N 216 LYS N H sing N N 217 LYS N H2 sing N N 218 LYS CA C sing N N 219 LYS CA CB sing N N 220 LYS CA HA sing N N 221 LYS C O doub N N 222 LYS C OXT sing N N 223 LYS CB CG sing N N 224 LYS CB HB2 sing N N 225 LYS CB HB3 sing N N 226 LYS CG CD sing N N 227 LYS CG HG2 sing N N 228 LYS CG HG3 sing N N 229 LYS CD CE sing N N 230 LYS CD HD2 sing N N 231 LYS CD HD3 sing N N 232 LYS CE NZ sing N N 233 LYS CE HE2 sing N N 234 LYS CE HE3 sing N N 235 LYS NZ HZ1 sing N N 236 LYS NZ HZ2 sing N N 237 LYS NZ HZ3 sing N N 238 LYS OXT HXT sing N N 239 MAN C1 C2 sing N N 240 MAN C1 O1 sing N N 241 MAN C1 O5 sing N N 242 MAN C1 H1 sing N N 243 MAN C2 C3 sing N N 244 MAN C2 O2 sing N N 245 MAN C2 H2 sing N N 246 MAN C3 C4 sing N N 247 MAN C3 O3 sing N N 248 MAN C3 H3 sing N N 249 MAN C4 C5 sing N N 250 MAN C4 O4 sing N N 251 MAN C4 H4 sing N N 252 MAN C5 C6 sing N N 253 MAN C5 O5 sing N N 254 MAN C5 H5 sing N N 255 MAN C6 O6 sing N N 256 MAN C6 H61 sing N N 257 MAN C6 H62 sing N N 258 MAN O1 HO1 sing N N 259 MAN O2 HO2 sing N N 260 MAN O3 HO3 sing N N 261 MAN O4 HO4 sing N N 262 MAN O6 HO6 sing N N 263 MET N CA sing N N 264 MET N H sing N N 265 MET N H2 sing N N 266 MET CA C sing N N 267 MET CA CB sing N N 268 MET CA HA sing N N 269 MET C O doub N N 270 MET C OXT sing N N 271 MET CB CG sing N N 272 MET CB HB2 sing N N 273 MET CB HB3 sing N N 274 MET CG SD sing N N 275 MET CG HG2 sing N N 276 MET CG HG3 sing N N 277 MET SD CE sing N N 278 MET CE HE1 sing N N 279 MET CE HE2 sing N N 280 MET CE HE3 sing N N 281 MET OXT HXT sing N N 282 NAG C1 C2 sing N N 283 NAG C1 O1 sing N N 284 NAG C1 O5 sing N N 285 NAG C1 H1 sing N N 286 NAG C2 C3 sing N N 287 NAG C2 N2 sing N N 288 NAG C2 H2 sing N N 289 NAG C3 C4 sing N N 290 NAG C3 O3 sing N N 291 NAG C3 H3 sing N N 292 NAG C4 C5 sing N N 293 NAG C4 O4 sing N N 294 NAG C4 H4 sing N N 295 NAG C5 C6 sing N N 296 NAG C5 O5 sing N N 297 NAG C5 H5 sing N N 298 NAG C6 O6 sing N N 299 NAG C6 H61 sing N N 300 NAG C6 H62 sing N N 301 NAG C7 C8 sing N N 302 NAG C7 N2 sing N N 303 NAG C7 O7 doub N N 304 NAG C8 H81 sing N N 305 NAG C8 H82 sing N N 306 NAG C8 H83 sing N N 307 NAG N2 HN2 sing N N 308 NAG O1 HO1 sing N N 309 NAG O3 HO3 sing N N 310 NAG O4 HO4 sing N N 311 NAG O6 HO6 sing N N 312 PHE N CA sing N N 313 PHE N H sing N N 314 PHE N H2 sing N N 315 PHE CA C sing N N 316 PHE CA CB sing N N 317 PHE CA HA sing N N 318 PHE C O doub N N 319 PHE C OXT sing N N 320 PHE CB CG sing N N 321 PHE CB HB2 sing N N 322 PHE CB HB3 sing N N 323 PHE CG CD1 doub Y N 324 PHE CG CD2 sing Y N 325 PHE CD1 CE1 sing Y N 326 PHE CD1 HD1 sing N N 327 PHE CD2 CE2 doub Y N 328 PHE CD2 HD2 sing N N 329 PHE CE1 CZ doub Y N 330 PHE CE1 HE1 sing N N 331 PHE CE2 CZ sing Y N 332 PHE CE2 HE2 sing N N 333 PHE CZ HZ sing N N 334 PHE OXT HXT sing N N 335 PRO N CA sing N N 336 PRO N CD sing N N 337 PRO N H sing N N 338 PRO CA C sing N N 339 PRO CA CB sing N N 340 PRO CA HA sing N N 341 PRO C O doub N N 342 PRO C OXT sing N N 343 PRO CB CG sing N N 344 PRO CB HB2 sing N N 345 PRO CB HB3 sing N N 346 PRO CG CD sing N N 347 PRO CG HG2 sing N N 348 PRO CG HG3 sing N N 349 PRO CD HD2 sing N N 350 PRO CD HD3 sing N N 351 PRO OXT HXT sing N N 352 SER N CA sing N N 353 SER N H sing N N 354 SER N H2 sing N N 355 SER CA C sing N N 356 SER CA CB sing N N 357 SER CA HA sing N N 358 SER C O doub N N 359 SER C OXT sing N N 360 SER CB OG sing N N 361 SER CB HB2 sing N N 362 SER CB HB3 sing N N 363 SER OG HG sing N N 364 SER OXT HXT sing N N 365 THR N CA sing N N 366 THR N H sing N N 367 THR N H2 sing N N 368 THR CA C sing N N 369 THR CA CB sing N N 370 THR CA HA sing N N 371 THR C O doub N N 372 THR C OXT sing N N 373 THR CB OG1 sing N N 374 THR CB CG2 sing N N 375 THR CB HB sing N N 376 THR OG1 HG1 sing N N 377 THR CG2 HG21 sing N N 378 THR CG2 HG22 sing N N 379 THR CG2 HG23 sing N N 380 THR OXT HXT sing N N 381 TRP N CA sing N N 382 TRP N H sing N N 383 TRP N H2 sing N N 384 TRP CA C sing N N 385 TRP CA CB sing N N 386 TRP CA HA sing N N 387 TRP C O doub N N 388 TRP C OXT sing N N 389 TRP CB CG sing N N 390 TRP CB HB2 sing N N 391 TRP CB HB3 sing N N 392 TRP CG CD1 doub Y N 393 TRP CG CD2 sing Y N 394 TRP CD1 NE1 sing Y N 395 TRP CD1 HD1 sing N N 396 TRP CD2 CE2 doub Y N 397 TRP CD2 CE3 sing Y N 398 TRP NE1 CE2 sing Y N 399 TRP NE1 HE1 sing N N 400 TRP CE2 CZ2 sing Y N 401 TRP CE3 CZ3 doub Y N 402 TRP CE3 HE3 sing N N 403 TRP CZ2 CH2 doub Y N 404 TRP CZ2 HZ2 sing N N 405 TRP CZ3 CH2 sing Y N 406 TRP CZ3 HZ3 sing N N 407 TRP CH2 HH2 sing N N 408 TRP OXT HXT sing N N 409 TYR N CA sing N N 410 TYR N H sing N N 411 TYR N H2 sing N N 412 TYR CA C sing N N 413 TYR CA CB sing N N 414 TYR CA HA sing N N 415 TYR C O doub N N 416 TYR C OXT sing N N 417 TYR CB CG sing N N 418 TYR CB HB2 sing N N 419 TYR CB HB3 sing N N 420 TYR CG CD1 doub Y N 421 TYR CG CD2 sing Y N 422 TYR CD1 CE1 sing Y N 423 TYR CD1 HD1 sing N N 424 TYR CD2 CE2 doub Y N 425 TYR CD2 HD2 sing N N 426 TYR CE1 CZ doub Y N 427 TYR CE1 HE1 sing N N 428 TYR CE2 CZ sing Y N 429 TYR CE2 HE2 sing N N 430 TYR CZ OH sing N N 431 TYR OH HH sing N N 432 TYR OXT HXT sing N N 433 VAL N CA sing N N 434 VAL N H sing N N 435 VAL N H2 sing N N 436 VAL CA C sing N N 437 VAL CA CB sing N N 438 VAL CA HA sing N N 439 VAL C O doub N N 440 VAL C OXT sing N N 441 VAL CB CG1 sing N N 442 VAL CB CG2 sing N N 443 VAL CB HB sing N N 444 VAL CG1 HG11 sing N N 445 VAL CG1 HG12 sing N N 446 VAL CG1 HG13 sing N N 447 VAL CG2 HG21 sing N N 448 VAL CG2 HG22 sing N N 449 VAL CG2 HG23 sing N N 450 VAL OXT HXT sing N N 451 # _em_admin.entry_id 7LRS _em_admin.current_status REL _em_admin.deposition_date 2021-02-17 _em_admin.deposition_site RCSB _em_admin.last_update 2024-11-13 _em_admin.map_release_date 2021-07-14 _em_admin.title 'Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.539951 # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 2697049 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 1 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details 'Local refinement of the SARS-CoV-2 RBD region in complex with the antibody A789-58.1 Fab' # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model OTHER _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details 'Particle subtraction from the spike-Fab complex' _em_particle_selection.method ? _em_particle_selection.num_particles_selected 123016 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'SYMMETRY DETERMINATION' ? ? ? 1 1 1 2 'IMAGE ACQUISITION' ? ? ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? cryoSPARC 2.15 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? Coot 0.93 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'MODEL REFINEMENT' ? PHENIX 1.19 ? 1 ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? cryoSPARC 2.15 1 ? ? 13 RECONSTRUCTION ? ? ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.5 _em_specimen.details 'Complex at 0.5 mg/mL concentration in the presence of 0.005% DDM' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 4 NAG 1 n 4 NAG 2 n 4 BMA 3 n 4 MAN 4 n 4 MAN 5 n 5 NAG 1 n 5 NAG 2 n 5 BMA 3 n # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7KMS # _atom_sites.entry_id 7LRS _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_