data_7LRS
#
_entry.id 7LRS
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.398
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 7LRS pdb_00007lrs 10.2210/pdb7lrs/pdb
WWPDB D_1000254852 ? ?
EMDB EMD-23498 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2021-07-14
2 'Structure model' 1 1 2021-08-25
3 'Structure model' 1 2 2024-11-13
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Data collection'
3 3 'Structure model' 'Refinement description'
4 3 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 2 'Structure model' citation
2 2 'Structure model' citation_author
3 2 'Structure model' database_2
4 3 'Structure model' chem_comp_atom
5 3 'Structure model' chem_comp_bond
6 3 'Structure model' em_3d_fitting_list
7 3 'Structure model' em_admin
8 3 'Structure model' pdbx_entry_details
9 3 'Structure model' pdbx_initial_refinement_model
10 3 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 2 'Structure model' '_citation.journal_volume'
2 2 'Structure model' '_citation_author.identifier_ORCID'
3 2 'Structure model' '_citation_author.name'
4 2 'Structure model' '_database_2.pdbx_DOI'
5 2 'Structure model' '_database_2.pdbx_database_accession'
6 3 'Structure model' '_em_3d_fitting_list.accession_code'
7 3 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id'
8 3 'Structure model' '_em_3d_fitting_list.source_name'
9 3 'Structure model' '_em_3d_fitting_list.type'
10 3 'Structure model' '_em_admin.last_update'
11 3 'Structure model' '_pdbx_entry_details.has_protein_modification'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.entry_id 7LRS
_pdbx_database_status.recvd_initial_deposition_date 2021-02-17
_pdbx_database_status.SG_entry N
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.details
_pdbx_database_related.db_id
_pdbx_database_related.content_type
EMDB . EMD-23498 'associated EM volume'
EMDB 'Full spike with antibody' EMD-23499 'other EM volume'
PDB 'Full spike with antibody' 7LRT unspecified
EMDB 'Structure from same class member' EMD-23915 'other EM volume'
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
_audit_author.identifier_ORCID
'Zhou, T.' 1 0000-0002-3935-4637
'Tsybovsky, Y.' 2 ?
#
_citation.abstract ?
_citation.abstract_id_CAS ?
_citation.book_id_ISBN ?
_citation.book_publisher ?
_citation.book_publisher_city ?
_citation.book_title ?
_citation.coordinate_linkage ?
_citation.country US
_citation.database_id_Medline ?
_citation.details ?
_citation.id primary
_citation.journal_abbrev Science
_citation.journal_id_ASTM SCIEAS
_citation.journal_id_CSD 0038
_citation.journal_id_ISSN 1095-9203
_citation.journal_full ?
_citation.journal_issue ?
_citation.journal_volume 373
_citation.language ?
_citation.page_first ?
_citation.page_last ?
_citation.title 'Ultrapotent antibodies against diverse and highly transmissible SARS-CoV-2 variants.'
_citation.year 2021
_citation.database_id_CSD ?
_citation.pdbx_database_id_DOI 10.1126/science.abh1766
_citation.pdbx_database_id_PubMed 34210892
_citation.pdbx_database_id_patent ?
_citation.unpublished_flag ?
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Wang, L.' 1 ?
primary 'Zhou, T.' 2 ?
primary 'Zhang, Y.' 3 ?
primary 'Yang, E.S.' 4 ?
primary 'Schramm, C.A.' 5 ?
primary 'Shi, W.' 6 ?
primary 'Pegu, A.' 7 ?
primary 'Oloniniyi, O.K.' 8 ?
primary 'Henry, A.R.' 9 ?
primary 'Darko, S.' 10 ?
primary 'Narpala, S.R.' 11 ?
primary 'Hatcher, C.' 12 ?
primary 'Martinez, D.R.' 13 ?
primary 'Tsybovsky, Y.' 14 ?
primary 'Phung, E.' 15 ?
primary 'Abiona, O.M.' 16 ?
primary 'Antia, A.' 17 ?
primary 'Cale, E.M.' 18 ?
primary 'Chang, L.A.' 19 ?
primary 'Choe, M.' 20 ?
primary 'Corbett, K.S.' 21 ?
primary 'Davis, R.L.' 22 ?
primary 'DiPiazza, A.T.' 23 ?
primary 'Gordon, I.J.' 24 ?
primary 'Hait, S.H.' 25 ?
primary 'Hermanus, T.' 26 ?
primary 'Kgagudi, P.' 27 ?
primary 'Laboune, F.' 28 ?
primary 'Leung, K.' 29 ?
primary 'Liu, T.' 30 ?
primary 'Mason, R.D.' 31 ?
primary 'Nazzari, A.F.' 32 ?
primary 'Novik, L.' 33 ?
primary
;O'Connell, S.
;
34 ?
primary
;O'Dell, S.
;
35 ?
primary 'Olia, A.S.' 36 ?
primary 'Schmidt, S.D.' 37 ?
primary 'Stephens, T.' 38 ?
primary 'Stringham, C.D.' 39 ?
primary 'Talana, C.A.' 40 ?
primary 'Teng, I.T.' 41 ?
primary 'Wagner, D.A.' 42 ?
primary 'Widge, A.T.' 43 ?
primary 'Zhang, B.' 44 ?
primary 'Roederer, M.' 45 ?
primary 'Ledgerwood, J.E.' 46 ?
primary 'Ruckwardt, T.J.' 47 ?
primary 'Gaudinski, M.R.' 48 ?
primary 'Moore, P.L.' 49 ?
primary 'Doria-Rose, N.A.' 50 ?
primary 'Baric, R.S.' 51 ?
primary 'Graham, B.S.' 52 ?
primary 'McDermott, A.B.' 53 ?
primary 'Douek, D.C.' 54 ?
primary 'Kwong, P.D.' 55 ?
primary 'Mascola, J.R.' 56 ?
primary 'Sullivan, N.J.' 57 ?
primary 'Misasi, J.' 58 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Spike glycoprotein' 21986.652 1 ? ? 'receptor binding domain (UNP residues 332-527)' ?
2 polymer man 'antibody A23-58.1 heavy chain' 24363.426 1 ? ? ? ?
3 polymer man 'antibody A23-58.1 light chain' 23475.006 1 ? ? ? ?
4 branched man
;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
;
910.823 1 ? ? ? ?
5 branched man
'beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 1 ?
? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'Spike protein S1'
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no no
;ITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIA
PGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFP
LQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP
;
;ITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIA
PGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFP
LQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP
;
C ?
2 'polypeptide(L)' no no
;QMQLVQSGPEVKKPGTSVKVSCKASGFTFTSSAVQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAY
MELSSLRSEDTAVYYCAAPNCSNVVCYDGFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV
TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
;
;QMQLVQSGPEVKKPGTSVKVSCKASGFTFTSSAVQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAY
MELSSLRSEDTAVYYCAAPNCSNVVCYDGFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPV
TVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
;
D ?
3 'polypeptide(L)' no no
;EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYSASSRATGIPDRFSGSGSGTDFTLTISRLE
PEDFAVYFCQQYGTSPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS
QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
;
;EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYSASSRATGIPDRFSGSGSGTDFTLTISRLE
PEDFAVYFCQQYGTSPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNS
QESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
;
E ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ILE n
1 2 THR n
1 3 ASN n
1 4 LEU n
1 5 CYS n
1 6 PRO n
1 7 PHE n
1 8 GLY n
1 9 GLU n
1 10 VAL n
1 11 PHE n
1 12 ASN n
1 13 ALA n
1 14 THR n
1 15 ARG n
1 16 PHE n
1 17 ALA n
1 18 SER n
1 19 VAL n
1 20 TYR n
1 21 ALA n
1 22 TRP n
1 23 ASN n
1 24 ARG n
1 25 LYS n
1 26 ARG n
1 27 ILE n
1 28 SER n
1 29 ASN n
1 30 CYS n
1 31 VAL n
1 32 ALA n
1 33 ASP n
1 34 TYR n
1 35 SER n
1 36 VAL n
1 37 LEU n
1 38 TYR n
1 39 ASN n
1 40 SER n
1 41 ALA n
1 42 SER n
1 43 PHE n
1 44 SER n
1 45 THR n
1 46 PHE n
1 47 LYS n
1 48 CYS n
1 49 TYR n
1 50 GLY n
1 51 VAL n
1 52 SER n
1 53 PRO n
1 54 THR n
1 55 LYS n
1 56 LEU n
1 57 ASN n
1 58 ASP n
1 59 LEU n
1 60 CYS n
1 61 PHE n
1 62 THR n
1 63 ASN n
1 64 VAL n
1 65 TYR n
1 66 ALA n
1 67 ASP n
1 68 SER n
1 69 PHE n
1 70 VAL n
1 71 ILE n
1 72 ARG n
1 73 GLY n
1 74 ASP n
1 75 GLU n
1 76 VAL n
1 77 ARG n
1 78 GLN n
1 79 ILE n
1 80 ALA n
1 81 PRO n
1 82 GLY n
1 83 GLN n
1 84 THR n
1 85 GLY n
1 86 LYS n
1 87 ILE n
1 88 ALA n
1 89 ASP n
1 90 TYR n
1 91 ASN n
1 92 TYR n
1 93 LYS n
1 94 LEU n
1 95 PRO n
1 96 ASP n
1 97 ASP n
1 98 PHE n
1 99 THR n
1 100 GLY n
1 101 CYS n
1 102 VAL n
1 103 ILE n
1 104 ALA n
1 105 TRP n
1 106 ASN n
1 107 SER n
1 108 ASN n
1 109 ASN n
1 110 LEU n
1 111 ASP n
1 112 SER n
1 113 LYS n
1 114 VAL n
1 115 GLY n
1 116 GLY n
1 117 ASN n
1 118 TYR n
1 119 ASN n
1 120 TYR n
1 121 LEU n
1 122 TYR n
1 123 ARG n
1 124 LEU n
1 125 PHE n
1 126 ARG n
1 127 LYS n
1 128 SER n
1 129 ASN n
1 130 LEU n
1 131 LYS n
1 132 PRO n
1 133 PHE n
1 134 GLU n
1 135 ARG n
1 136 ASP n
1 137 ILE n
1 138 SER n
1 139 THR n
1 140 GLU n
1 141 ILE n
1 142 TYR n
1 143 GLN n
1 144 ALA n
1 145 GLY n
1 146 SER n
1 147 THR n
1 148 PRO n
1 149 CYS n
1 150 ASN n
1 151 GLY n
1 152 VAL n
1 153 GLU n
1 154 GLY n
1 155 PHE n
1 156 ASN n
1 157 CYS n
1 158 TYR n
1 159 PHE n
1 160 PRO n
1 161 LEU n
1 162 GLN n
1 163 SER n
1 164 TYR n
1 165 GLY n
1 166 PHE n
1 167 GLN n
1 168 PRO n
1 169 THR n
1 170 ASN n
1 171 GLY n
1 172 VAL n
1 173 GLY n
1 174 TYR n
1 175 GLN n
1 176 PRO n
1 177 TYR n
1 178 ARG n
1 179 VAL n
1 180 VAL n
1 181 VAL n
1 182 LEU n
1 183 SER n
1 184 PHE n
1 185 GLU n
1 186 LEU n
1 187 LEU n
1 188 HIS n
1 189 ALA n
1 190 PRO n
1 191 ALA n
1 192 THR n
1 193 VAL n
1 194 CYS n
1 195 GLY n
1 196 PRO n
2 1 GLN n
2 2 MET n
2 3 GLN n
2 4 LEU n
2 5 VAL n
2 6 GLN n
2 7 SER n
2 8 GLY n
2 9 PRO n
2 10 GLU n
2 11 VAL n
2 12 LYS n
2 13 LYS n
2 14 PRO n
2 15 GLY n
2 16 THR n
2 17 SER n
2 18 VAL n
2 19 LYS n
2 20 VAL n
2 21 SER n
2 22 CYS n
2 23 LYS n
2 24 ALA n
2 25 SER n
2 26 GLY n
2 27 PHE n
2 28 THR n
2 29 PHE n
2 30 THR n
2 31 SER n
2 32 SER n
2 33 ALA n
2 34 VAL n
2 35 GLN n
2 36 TRP n
2 37 VAL n
2 38 ARG n
2 39 GLN n
2 40 ALA n
2 41 ARG n
2 42 GLY n
2 43 GLN n
2 44 ARG n
2 45 LEU n
2 46 GLU n
2 47 TRP n
2 48 ILE n
2 49 GLY n
2 50 TRP n
2 51 ILE n
2 52 VAL n
2 53 VAL n
2 54 GLY n
2 55 SER n
2 56 GLY n
2 57 ASN n
2 58 THR n
2 59 ASN n
2 60 TYR n
2 61 ALA n
2 62 GLN n
2 63 LYS n
2 64 PHE n
2 65 GLN n
2 66 GLU n
2 67 ARG n
2 68 VAL n
2 69 THR n
2 70 ILE n
2 71 THR n
2 72 ARG n
2 73 ASP n
2 74 MET n
2 75 SER n
2 76 THR n
2 77 SER n
2 78 THR n
2 79 ALA n
2 80 TYR n
2 81 MET n
2 82 GLU n
2 83 LEU n
2 84 SER n
2 85 SER n
2 86 LEU n
2 87 ARG n
2 88 SER n
2 89 GLU n
2 90 ASP n
2 91 THR n
2 92 ALA n
2 93 VAL n
2 94 TYR n
2 95 TYR n
2 96 CYS n
2 97 ALA n
2 98 ALA n
2 99 PRO n
2 100 ASN n
2 101 CYS n
2 102 SER n
2 103 ASN n
2 104 VAL n
2 105 VAL n
2 106 CYS n
2 107 TYR n
2 108 ASP n
2 109 GLY n
2 110 PHE n
2 111 ASP n
2 112 ILE n
2 113 TRP n
2 114 GLY n
2 115 GLN n
2 116 GLY n
2 117 THR n
2 118 MET n
2 119 VAL n
2 120 THR n
2 121 VAL n
2 122 SER n
2 123 SER n
2 124 ALA n
2 125 SER n
2 126 THR n
2 127 LYS n
2 128 GLY n
2 129 PRO n
2 130 SER n
2 131 VAL n
2 132 PHE n
2 133 PRO n
2 134 LEU n
2 135 ALA n
2 136 PRO n
2 137 SER n
2 138 SER n
2 139 LYS n
2 140 SER n
2 141 THR n
2 142 SER n
2 143 GLY n
2 144 GLY n
2 145 THR n
2 146 ALA n
2 147 ALA n
2 148 LEU n
2 149 GLY n
2 150 CYS n
2 151 LEU n
2 152 VAL n
2 153 LYS n
2 154 ASP n
2 155 TYR n
2 156 PHE n
2 157 PRO n
2 158 GLU n
2 159 PRO n
2 160 VAL n
2 161 THR n
2 162 VAL n
2 163 SER n
2 164 TRP n
2 165 ASN n
2 166 SER n
2 167 GLY n
2 168 ALA n
2 169 LEU n
2 170 THR n
2 171 SER n
2 172 GLY n
2 173 VAL n
2 174 HIS n
2 175 THR n
2 176 PHE n
2 177 PRO n
2 178 ALA n
2 179 VAL n
2 180 LEU n
2 181 GLN n
2 182 SER n
2 183 SER n
2 184 GLY n
2 185 LEU n
2 186 TYR n
2 187 SER n
2 188 LEU n
2 189 SER n
2 190 SER n
2 191 VAL n
2 192 VAL n
2 193 THR n
2 194 VAL n
2 195 PRO n
2 196 SER n
2 197 SER n
2 198 SER n
2 199 LEU n
2 200 GLY n
2 201 THR n
2 202 GLN n
2 203 THR n
2 204 TYR n
2 205 ILE n
2 206 CYS n
2 207 ASN n
2 208 VAL n
2 209 ASN n
2 210 HIS n
2 211 LYS n
2 212 PRO n
2 213 SER n
2 214 ASN n
2 215 THR n
2 216 LYS n
2 217 VAL n
2 218 ASP n
2 219 LYS n
2 220 LYS n
2 221 VAL n
2 222 GLU n
2 223 PRO n
2 224 LYS n
2 225 SER n
2 226 CYS n
2 227 ASP n
2 228 LYS n
3 1 GLU n
3 2 ILE n
3 3 VAL n
3 4 LEU n
3 5 THR n
3 6 GLN n
3 7 SER n
3 8 PRO n
3 9 GLY n
3 10 THR n
3 11 LEU n
3 12 SER n
3 13 LEU n
3 14 SER n
3 15 PRO n
3 16 GLY n
3 17 GLU n
3 18 ARG n
3 19 ALA n
3 20 THR n
3 21 LEU n
3 22 SER n
3 23 CYS n
3 24 ARG n
3 25 ALA n
3 26 SER n
3 27 GLN n
3 28 SER n
3 29 VAL n
3 30 SER n
3 31 SER n
3 32 SER n
3 33 TYR n
3 34 LEU n
3 35 ALA n
3 36 TRP n
3 37 TYR n
3 38 GLN n
3 39 GLN n
3 40 LYS n
3 41 PRO n
3 42 GLY n
3 43 GLN n
3 44 ALA n
3 45 PRO n
3 46 ARG n
3 47 LEU n
3 48 LEU n
3 49 ILE n
3 50 TYR n
3 51 SER n
3 52 ALA n
3 53 SER n
3 54 SER n
3 55 ARG n
3 56 ALA n
3 57 THR n
3 58 GLY n
3 59 ILE n
3 60 PRO n
3 61 ASP n
3 62 ARG n
3 63 PHE n
3 64 SER n
3 65 GLY n
3 66 SER n
3 67 GLY n
3 68 SER n
3 69 GLY n
3 70 THR n
3 71 ASP n
3 72 PHE n
3 73 THR n
3 74 LEU n
3 75 THR n
3 76 ILE n
3 77 SER n
3 78 ARG n
3 79 LEU n
3 80 GLU n
3 81 PRO n
3 82 GLU n
3 83 ASP n
3 84 PHE n
3 85 ALA n
3 86 VAL n
3 87 TYR n
3 88 PHE n
3 89 CYS n
3 90 GLN n
3 91 GLN n
3 92 TYR n
3 93 GLY n
3 94 THR n
3 95 SER n
3 96 PRO n
3 97 TRP n
3 98 THR n
3 99 PHE n
3 100 GLY n
3 101 GLN n
3 102 GLY n
3 103 THR n
3 104 LYS n
3 105 VAL n
3 106 GLU n
3 107 ILE n
3 108 LYS n
3 109 ARG n
3 110 THR n
3 111 VAL n
3 112 ALA n
3 113 ALA n
3 114 PRO n
3 115 SER n
3 116 VAL n
3 117 PHE n
3 118 ILE n
3 119 PHE n
3 120 PRO n
3 121 PRO n
3 122 SER n
3 123 ASP n
3 124 GLU n
3 125 GLN n
3 126 LEU n
3 127 LYS n
3 128 SER n
3 129 GLY n
3 130 THR n
3 131 ALA n
3 132 SER n
3 133 VAL n
3 134 VAL n
3 135 CYS n
3 136 LEU n
3 137 LEU n
3 138 ASN n
3 139 ASN n
3 140 PHE n
3 141 TYR n
3 142 PRO n
3 143 ARG n
3 144 GLU n
3 145 ALA n
3 146 LYS n
3 147 VAL n
3 148 GLN n
3 149 TRP n
3 150 LYS n
3 151 VAL n
3 152 ASP n
3 153 ASN n
3 154 ALA n
3 155 LEU n
3 156 GLN n
3 157 SER n
3 158 GLY n
3 159 ASN n
3 160 SER n
3 161 GLN n
3 162 GLU n
3 163 SER n
3 164 VAL n
3 165 THR n
3 166 GLU n
3 167 GLN n
3 168 ASP n
3 169 SER n
3 170 LYS n
3 171 ASP n
3 172 SER n
3 173 THR n
3 174 TYR n
3 175 SER n
3 176 LEU n
3 177 SER n
3 178 SER n
3 179 THR n
3 180 LEU n
3 181 THR n
3 182 LEU n
3 183 SER n
3 184 LYS n
3 185 ALA n
3 186 ASP n
3 187 TYR n
3 188 GLU n
3 189 LYS n
3 190 HIS n
3 191 LYS n
3 192 VAL n
3 193 TYR n
3 194 ALA n
3 195 CYS n
3 196 GLU n
3 197 VAL n
3 198 THR n
3 199 HIS n
3 200 GLN n
3 201 GLY n
3 202 LEU n
3 203 SER n
3 204 SER n
3 205 PRO n
3 206 VAL n
3 207 THR n
3 208 LYS n
3 209 SER n
3 210 PHE n
3 211 ASN n
3 212 ARG n
3 213 GLY n
3 214 GLU n
3 215 CYS n
#
loop_
_entity_src_gen.entity_id
_entity_src_gen.pdbx_src_id
_entity_src_gen.pdbx_alt_source_flag
_entity_src_gen.pdbx_seq_type
_entity_src_gen.pdbx_beg_seq_num
_entity_src_gen.pdbx_end_seq_num
_entity_src_gen.gene_src_common_name
_entity_src_gen.gene_src_genus
_entity_src_gen.pdbx_gene_src_gene
_entity_src_gen.gene_src_species
_entity_src_gen.gene_src_strain
_entity_src_gen.gene_src_tissue
_entity_src_gen.gene_src_tissue_fraction
_entity_src_gen.gene_src_details
_entity_src_gen.pdbx_gene_src_fragment
_entity_src_gen.pdbx_gene_src_scientific_name
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id
_entity_src_gen.pdbx_gene_src_variant
_entity_src_gen.pdbx_gene_src_cell_line
_entity_src_gen.pdbx_gene_src_atcc
_entity_src_gen.pdbx_gene_src_organ
_entity_src_gen.pdbx_gene_src_organelle
_entity_src_gen.pdbx_gene_src_cell
_entity_src_gen.pdbx_gene_src_cellular_location
_entity_src_gen.host_org_common_name
_entity_src_gen.pdbx_host_org_scientific_name
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id
_entity_src_gen.host_org_genus
_entity_src_gen.pdbx_host_org_gene
_entity_src_gen.pdbx_host_org_organ
_entity_src_gen.host_org_species
_entity_src_gen.pdbx_host_org_tissue
_entity_src_gen.pdbx_host_org_tissue_fraction
_entity_src_gen.pdbx_host_org_strain
_entity_src_gen.pdbx_host_org_variant
_entity_src_gen.pdbx_host_org_cell_line
_entity_src_gen.pdbx_host_org_atcc
_entity_src_gen.pdbx_host_org_culture_collection
_entity_src_gen.pdbx_host_org_cell
_entity_src_gen.pdbx_host_org_organelle
_entity_src_gen.pdbx_host_org_cellular_location
_entity_src_gen.pdbx_host_org_vector_type
_entity_src_gen.pdbx_host_org_vector
_entity_src_gen.host_org_details
_entity_src_gen.expression_system_id
_entity_src_gen.plasmid_name
_entity_src_gen.plasmid_details
_entity_src_gen.pdbx_description
1 1 sample 'Biological sequence' 1 196 '2019-nCoV, SARS-CoV-2' ? 'S, 2' ? ? ? ? ? ?
'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'HEK 293F' ? ? ?
? ? plasmid ? ? ? pVRC8400 ? ?
2 1 sample 'Biological sequence' 1 228 Human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? Human
'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
3 1 sample 'Biological sequence' 1 215 Human ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? Human
'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ?
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
4 oligosaccharide
5 oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 4 'DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH'
'Glycam Condensed Sequence' GMML 1.0
2 4 'WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1' WURCS PDB2Glycan
1.1.0
3 4 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}' LINUCS PDB-CARE
?
4 5 DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-ROH
'Glycam Condensed Sequence' GMML 1.0
5 5 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan
1.1.0
6 5 '[][D-1-deoxy-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}' LINUCS PDB-CARE
?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 4 2 NAG C1 O1 1 NAG O4 HO4 sing ?
2 4 3 BMA C1 O1 2 NAG O4 HO4 sing ?
3 4 4 MAN C1 O1 3 BMA O3 HO3 sing ?
4 4 5 MAN C1 O1 3 BMA O6 HO6 sing ?
5 5 2 NAG C1 O1 1 NAG O4 HO4 sing ?
6 5 3 BMA C1 O1 2 NAG O4 HO4 sing ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
BMA 'D-saccharide, beta linking' . beta-D-mannopyranose 'beta-D-mannose; D-mannose; mannose' 'C6 H12 O6'
180.156
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6'
180.156
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose
;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
;
'C8 H15 N O6' 221.208
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb
BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose
BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp
BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man
MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa
MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose
MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp
MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man
NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb
NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine
NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc
NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ILE 1 332 332 ILE ILE C . n
A 1 2 THR 2 333 333 THR THR C . n
A 1 3 ASN 3 334 334 ASN ASN C . n
A 1 4 LEU 4 335 335 LEU LEU C . n
A 1 5 CYS 5 336 336 CYS CYS C . n
A 1 6 PRO 6 337 337 PRO PRO C . n
A 1 7 PHE 7 338 338 PHE PHE C . n
A 1 8 GLY 8 339 339 GLY GLY C . n
A 1 9 GLU 9 340 340 GLU GLU C . n
A 1 10 VAL 10 341 341 VAL VAL C . n
A 1 11 PHE 11 342 342 PHE PHE C . n
A 1 12 ASN 12 343 343 ASN ASN C . n
A 1 13 ALA 13 344 344 ALA ALA C . n
A 1 14 THR 14 345 345 THR THR C . n
A 1 15 ARG 15 346 346 ARG ARG C . n
A 1 16 PHE 16 347 347 PHE PHE C . n
A 1 17 ALA 17 348 348 ALA ALA C . n
A 1 18 SER 18 349 349 SER SER C . n
A 1 19 VAL 19 350 350 VAL VAL C . n
A 1 20 TYR 20 351 351 TYR TYR C . n
A 1 21 ALA 21 352 352 ALA ALA C . n
A 1 22 TRP 22 353 353 TRP TRP C . n
A 1 23 ASN 23 354 354 ASN ASN C . n
A 1 24 ARG 24 355 355 ARG ARG C . n
A 1 25 LYS 25 356 356 LYS LYS C . n
A 1 26 ARG 26 357 357 ARG ARG C . n
A 1 27 ILE 27 358 358 ILE ILE C . n
A 1 28 SER 28 359 359 SER SER C . n
A 1 29 ASN 29 360 360 ASN ASN C . n
A 1 30 CYS 30 361 361 CYS CYS C . n
A 1 31 VAL 31 362 362 VAL VAL C . n
A 1 32 ALA 32 363 363 ALA ALA C . n
A 1 33 ASP 33 364 364 ASP ASP C . n
A 1 34 TYR 34 365 365 TYR TYR C . n
A 1 35 SER 35 366 366 SER SER C . n
A 1 36 VAL 36 367 367 VAL VAL C . n
A 1 37 LEU 37 368 368 LEU LEU C . n
A 1 38 TYR 38 369 369 TYR TYR C . n
A 1 39 ASN 39 370 370 ASN ASN C . n
A 1 40 SER 40 371 371 SER SER C . n
A 1 41 ALA 41 372 372 ALA ALA C . n
A 1 42 SER 42 373 373 SER SER C . n
A 1 43 PHE 43 374 374 PHE PHE C . n
A 1 44 SER 44 375 375 SER SER C . n
A 1 45 THR 45 376 376 THR THR C . n
A 1 46 PHE 46 377 377 PHE PHE C . n
A 1 47 LYS 47 378 378 LYS LYS C . n
A 1 48 CYS 48 379 379 CYS CYS C . n
A 1 49 TYR 49 380 380 TYR TYR C . n
A 1 50 GLY 50 381 381 GLY GLY C . n
A 1 51 VAL 51 382 382 VAL VAL C . n
A 1 52 SER 52 383 383 SER SER C . n
A 1 53 PRO 53 384 384 PRO PRO C . n
A 1 54 THR 54 385 385 THR THR C . n
A 1 55 LYS 55 386 386 LYS LYS C . n
A 1 56 LEU 56 387 387 LEU LEU C . n
A 1 57 ASN 57 388 388 ASN ASN C . n
A 1 58 ASP 58 389 389 ASP ASP C . n
A 1 59 LEU 59 390 390 LEU LEU C . n
A 1 60 CYS 60 391 391 CYS CYS C . n
A 1 61 PHE 61 392 392 PHE PHE C . n
A 1 62 THR 62 393 393 THR THR C . n
A 1 63 ASN 63 394 394 ASN ASN C . n
A 1 64 VAL 64 395 395 VAL VAL C . n
A 1 65 TYR 65 396 396 TYR TYR C . n
A 1 66 ALA 66 397 397 ALA ALA C . n
A 1 67 ASP 67 398 398 ASP ASP C . n
A 1 68 SER 68 399 399 SER SER C . n
A 1 69 PHE 69 400 400 PHE PHE C . n
A 1 70 VAL 70 401 401 VAL VAL C . n
A 1 71 ILE 71 402 402 ILE ILE C . n
A 1 72 ARG 72 403 403 ARG ARG C . n
A 1 73 GLY 73 404 404 GLY GLY C . n
A 1 74 ASP 74 405 405 ASP ASP C . n
A 1 75 GLU 75 406 406 GLU GLU C . n
A 1 76 VAL 76 407 407 VAL VAL C . n
A 1 77 ARG 77 408 408 ARG ARG C . n
A 1 78 GLN 78 409 409 GLN GLN C . n
A 1 79 ILE 79 410 410 ILE ILE C . n
A 1 80 ALA 80 411 411 ALA ALA C . n
A 1 81 PRO 81 412 412 PRO PRO C . n
A 1 82 GLY 82 413 413 GLY GLY C . n
A 1 83 GLN 83 414 414 GLN GLN C . n
A 1 84 THR 84 415 415 THR THR C . n
A 1 85 GLY 85 416 416 GLY GLY C . n
A 1 86 LYS 86 417 417 LYS LYS C . n
A 1 87 ILE 87 418 418 ILE ILE C . n
A 1 88 ALA 88 419 419 ALA ALA C . n
A 1 89 ASP 89 420 420 ASP ASP C . n
A 1 90 TYR 90 421 421 TYR TYR C . n
A 1 91 ASN 91 422 422 ASN ASN C . n
A 1 92 TYR 92 423 423 TYR TYR C . n
A 1 93 LYS 93 424 424 LYS LYS C . n
A 1 94 LEU 94 425 425 LEU LEU C . n
A 1 95 PRO 95 426 426 PRO PRO C . n
A 1 96 ASP 96 427 427 ASP ASP C . n
A 1 97 ASP 97 428 428 ASP ASP C . n
A 1 98 PHE 98 429 429 PHE PHE C . n
A 1 99 THR 99 430 430 THR THR C . n
A 1 100 GLY 100 431 431 GLY GLY C . n
A 1 101 CYS 101 432 432 CYS CYS C . n
A 1 102 VAL 102 433 433 VAL VAL C . n
A 1 103 ILE 103 434 434 ILE ILE C . n
A 1 104 ALA 104 435 435 ALA ALA C . n
A 1 105 TRP 105 436 436 TRP TRP C . n
A 1 106 ASN 106 437 437 ASN ASN C . n
A 1 107 SER 107 438 438 SER SER C . n
A 1 108 ASN 108 439 439 ASN ASN C . n
A 1 109 ASN 109 440 440 ASN ASN C . n
A 1 110 LEU 110 441 441 LEU LEU C . n
A 1 111 ASP 111 442 442 ASP ASP C . n
A 1 112 SER 112 443 443 SER SER C . n
A 1 113 LYS 113 444 444 LYS LYS C . n
A 1 114 VAL 114 445 445 VAL VAL C . n
A 1 115 GLY 115 446 446 GLY GLY C . n
A 1 116 GLY 116 447 447 GLY GLY C . n
A 1 117 ASN 117 448 448 ASN ASN C . n
A 1 118 TYR 118 449 449 TYR TYR C . n
A 1 119 ASN 119 450 450 ASN ASN C . n
A 1 120 TYR 120 451 451 TYR TYR C . n
A 1 121 LEU 121 452 452 LEU LEU C . n
A 1 122 TYR 122 453 453 TYR TYR C . n
A 1 123 ARG 123 454 454 ARG ARG C . n
A 1 124 LEU 124 455 455 LEU LEU C . n
A 1 125 PHE 125 456 456 PHE PHE C . n
A 1 126 ARG 126 457 457 ARG ARG C . n
A 1 127 LYS 127 458 458 LYS LYS C . n
A 1 128 SER 128 459 459 SER SER C . n
A 1 129 ASN 129 460 460 ASN ASN C . n
A 1 130 LEU 130 461 461 LEU LEU C . n
A 1 131 LYS 131 462 462 LYS LYS C . n
A 1 132 PRO 132 463 463 PRO PRO C . n
A 1 133 PHE 133 464 464 PHE PHE C . n
A 1 134 GLU 134 465 465 GLU GLU C . n
A 1 135 ARG 135 466 466 ARG ARG C . n
A 1 136 ASP 136 467 467 ASP ASP C . n
A 1 137 ILE 137 468 468 ILE ILE C . n
A 1 138 SER 138 469 469 SER SER C . n
A 1 139 THR 139 470 470 THR THR C . n
A 1 140 GLU 140 471 471 GLU GLU C . n
A 1 141 ILE 141 472 472 ILE ILE C . n
A 1 142 TYR 142 473 473 TYR TYR C . n
A 1 143 GLN 143 474 474 GLN GLN C . n
A 1 144 ALA 144 475 475 ALA ALA C . n
A 1 145 GLY 145 476 476 GLY GLY C . n
A 1 146 SER 146 477 477 SER SER C . n
A 1 147 THR 147 478 478 THR THR C . n
A 1 148 PRO 148 479 479 PRO PRO C . n
A 1 149 CYS 149 480 480 CYS CYS C . n
A 1 150 ASN 150 481 481 ASN ASN C . n
A 1 151 GLY 151 482 482 GLY GLY C . n
A 1 152 VAL 152 483 483 VAL VAL C . n
A 1 153 GLU 153 484 484 GLU GLU C . n
A 1 154 GLY 154 485 485 GLY GLY C . n
A 1 155 PHE 155 486 486 PHE PHE C . n
A 1 156 ASN 156 487 487 ASN ASN C . n
A 1 157 CYS 157 488 488 CYS CYS C . n
A 1 158 TYR 158 489 489 TYR TYR C . n
A 1 159 PHE 159 490 490 PHE PHE C . n
A 1 160 PRO 160 491 491 PRO PRO C . n
A 1 161 LEU 161 492 492 LEU LEU C . n
A 1 162 GLN 162 493 493 GLN GLN C . n
A 1 163 SER 163 494 494 SER SER C . n
A 1 164 TYR 164 495 495 TYR TYR C . n
A 1 165 GLY 165 496 496 GLY GLY C . n
A 1 166 PHE 166 497 497 PHE PHE C . n
A 1 167 GLN 167 498 498 GLN GLN C . n
A 1 168 PRO 168 499 499 PRO PRO C . n
A 1 169 THR 169 500 500 THR THR C . n
A 1 170 ASN 170 501 501 ASN ASN C . n
A 1 171 GLY 171 502 502 GLY GLY C . n
A 1 172 VAL 172 503 503 VAL VAL C . n
A 1 173 GLY 173 504 504 GLY GLY C . n
A 1 174 TYR 174 505 505 TYR TYR C . n
A 1 175 GLN 175 506 506 GLN GLN C . n
A 1 176 PRO 176 507 507 PRO PRO C . n
A 1 177 TYR 177 508 508 TYR TYR C . n
A 1 178 ARG 178 509 509 ARG ARG C . n
A 1 179 VAL 179 510 510 VAL VAL C . n
A 1 180 VAL 180 511 511 VAL VAL C . n
A 1 181 VAL 181 512 512 VAL VAL C . n
A 1 182 LEU 182 513 513 LEU LEU C . n
A 1 183 SER 183 514 514 SER SER C . n
A 1 184 PHE 184 515 515 PHE PHE C . n
A 1 185 GLU 185 516 516 GLU GLU C . n
A 1 186 LEU 186 517 517 LEU LEU C . n
A 1 187 LEU 187 518 518 LEU LEU C . n
A 1 188 HIS 188 519 519 HIS HIS C . n
A 1 189 ALA 189 520 520 ALA ALA C . n
A 1 190 PRO 190 521 521 PRO PRO C . n
A 1 191 ALA 191 522 522 ALA ALA C . n
A 1 192 THR 192 523 523 THR THR C . n
A 1 193 VAL 193 524 524 VAL VAL C . n
A 1 194 CYS 194 525 525 CYS CYS C . n
A 1 195 GLY 195 526 526 GLY GLY C . n
A 1 196 PRO 196 527 527 PRO PRO C . n
B 2 1 GLN 1 1 1 GLN GLN D . n
B 2 2 MET 2 2 2 MET MET D . n
B 2 3 GLN 3 3 3 GLN GLN D . n
B 2 4 LEU 4 4 4 LEU LEU D . n
B 2 5 VAL 5 5 5 VAL VAL D . n
B 2 6 GLN 6 6 6 GLN GLN D . n
B 2 7 SER 7 7 7 SER SER D . n
B 2 8 GLY 8 8 8 GLY GLY D . n
B 2 9 PRO 9 9 9 PRO PRO D . n
B 2 10 GLU 10 10 10 GLU GLU D . n
B 2 11 VAL 11 11 11 VAL VAL D . n
B 2 12 LYS 12 12 12 LYS LYS D . n
B 2 13 LYS 13 13 13 LYS LYS D . n
B 2 14 PRO 14 14 14 PRO PRO D . n
B 2 15 GLY 15 15 15 GLY GLY D . n
B 2 16 THR 16 16 16 THR THR D . n
B 2 17 SER 17 17 17 SER SER D . n
B 2 18 VAL 18 18 18 VAL VAL D . n
B 2 19 LYS 19 19 19 LYS LYS D . n
B 2 20 VAL 20 20 20 VAL VAL D . n
B 2 21 SER 21 21 21 SER SER D . n
B 2 22 CYS 22 22 22 CYS CYS D . n
B 2 23 LYS 23 23 23 LYS LYS D . n
B 2 24 ALA 24 24 24 ALA ALA D . n
B 2 25 SER 25 25 25 SER SER D . n
B 2 26 GLY 26 26 26 GLY GLY D . n
B 2 27 PHE 27 27 27 PHE PHE D . n
B 2 28 THR 28 28 28 THR THR D . n
B 2 29 PHE 29 29 29 PHE PHE D . n
B 2 30 THR 30 30 30 THR THR D . n
B 2 31 SER 31 31 31 SER SER D . n
B 2 32 SER 32 32 32 SER SER D . n
B 2 33 ALA 33 33 33 ALA ALA D . n
B 2 34 VAL 34 34 34 VAL VAL D . n
B 2 35 GLN 35 35 35 GLN GLN D . n
B 2 36 TRP 36 36 36 TRP TRP D . n
B 2 37 VAL 37 37 37 VAL VAL D . n
B 2 38 ARG 38 38 38 ARG ARG D . n
B 2 39 GLN 39 39 39 GLN GLN D . n
B 2 40 ALA 40 40 40 ALA ALA D . n
B 2 41 ARG 41 41 41 ARG ARG D . n
B 2 42 GLY 42 42 42 GLY GLY D . n
B 2 43 GLN 43 43 43 GLN GLN D . n
B 2 44 ARG 44 44 44 ARG ARG D . n
B 2 45 LEU 45 45 45 LEU LEU D . n
B 2 46 GLU 46 46 46 GLU GLU D . n
B 2 47 TRP 47 47 47 TRP TRP D . n
B 2 48 ILE 48 48 48 ILE ILE D . n
B 2 49 GLY 49 49 49 GLY GLY D . n
B 2 50 TRP 50 50 50 TRP TRP D . n
B 2 51 ILE 51 51 51 ILE ILE D . n
B 2 52 VAL 52 52 52 VAL VAL D . n
B 2 53 VAL 53 52 52 VAL VAL D A n
B 2 54 GLY 54 53 53 GLY GLY D . n
B 2 55 SER 55 54 54 SER SER D . n
B 2 56 GLY 56 55 55 GLY GLY D . n
B 2 57 ASN 57 56 56 ASN ASN D . n
B 2 58 THR 58 57 57 THR THR D . n
B 2 59 ASN 59 58 58 ASN ASN D . n
B 2 60 TYR 60 59 59 TYR TYR D . n
B 2 61 ALA 61 60 60 ALA ALA D . n
B 2 62 GLN 62 61 61 GLN GLN D . n
B 2 63 LYS 63 62 62 LYS LYS D . n
B 2 64 PHE 64 63 63 PHE PHE D . n
B 2 65 GLN 65 64 64 GLN GLN D . n
B 2 66 GLU 66 65 65 GLU GLU D . n
B 2 67 ARG 67 66 66 ARG ARG D . n
B 2 68 VAL 68 67 67 VAL VAL D . n
B 2 69 THR 69 68 68 THR THR D . n
B 2 70 ILE 70 69 69 ILE ILE D . n
B 2 71 THR 71 70 70 THR THR D . n
B 2 72 ARG 72 71 71 ARG ARG D . n
B 2 73 ASP 73 72 72 ASP ASP D . n
B 2 74 MET 74 73 73 MET MET D . n
B 2 75 SER 75 74 74 SER SER D . n
B 2 76 THR 76 75 75 THR THR D . n
B 2 77 SER 77 76 76 SER SER D . n
B 2 78 THR 78 77 77 THR THR D . n
B 2 79 ALA 79 78 78 ALA ALA D . n
B 2 80 TYR 80 79 79 TYR TYR D . n
B 2 81 MET 81 80 80 MET MET D . n
B 2 82 GLU 82 81 81 GLU GLU D . n
B 2 83 LEU 83 82 82 LEU LEU D . n
B 2 84 SER 84 82 82 SER SER D A n
B 2 85 SER 85 82 82 SER SER D B n
B 2 86 LEU 86 82 82 LEU LEU D C n
B 2 87 ARG 87 83 83 ARG ARG D . n
B 2 88 SER 88 84 84 SER SER D . n
B 2 89 GLU 89 85 85 GLU GLU D . n
B 2 90 ASP 90 86 86 ASP ASP D . n
B 2 91 THR 91 87 87 THR THR D . n
B 2 92 ALA 92 88 88 ALA ALA D . n
B 2 93 VAL 93 89 89 VAL VAL D . n
B 2 94 TYR 94 90 90 TYR TYR D . n
B 2 95 TYR 95 91 91 TYR TYR D . n
B 2 96 CYS 96 92 92 CYS CYS D . n
B 2 97 ALA 97 93 93 ALA ALA D . n
B 2 98 ALA 98 94 94 ALA ALA D . n
B 2 99 PRO 99 95 95 PRO PRO D . n
B 2 100 ASN 100 96 96 ASN ASN D . n
B 2 101 CYS 101 97 97 CYS CYS D . n
B 2 102 SER 102 98 98 SER SER D . n
B 2 103 ASN 103 99 99 ASN ASN D . n
B 2 104 VAL 104 100 100 VAL VAL D . n
B 2 105 VAL 105 100 100 VAL VAL D A n
B 2 106 CYS 106 100 100 CYS CYS D B n
B 2 107 TYR 107 100 100 TYR TYR D C n
B 2 108 ASP 108 100 100 ASP ASP D D n
B 2 109 GLY 109 100 100 GLY GLY D E n
B 2 110 PHE 110 100 100 PHE PHE D F n
B 2 111 ASP 111 101 101 ASP ASP D . n
B 2 112 ILE 112 102 102 ILE ILE D . n
B 2 113 TRP 113 103 103 TRP TRP D . n
B 2 114 GLY 114 104 104 GLY GLY D . n
B 2 115 GLN 115 105 105 GLN GLN D . n
B 2 116 GLY 116 106 106 GLY GLY D . n
B 2 117 THR 117 107 107 THR THR D . n
B 2 118 MET 118 108 108 MET MET D . n
B 2 119 VAL 119 109 109 VAL VAL D . n
B 2 120 THR 120 110 110 THR THR D . n
B 2 121 VAL 121 111 111 VAL VAL D . n
B 2 122 SER 122 112 112 SER SER D . n
B 2 123 SER 123 113 113 SER SER D . n
B 2 124 ALA 124 114 114 ALA ALA D . n
B 2 125 SER 125 115 115 SER SER D . n
B 2 126 THR 126 116 116 THR THR D . n
B 2 127 LYS 127 117 117 LYS LYS D . n
B 2 128 GLY 128 118 118 GLY GLY D . n
B 2 129 PRO 129 119 119 PRO PRO D . n
B 2 130 SER 130 120 120 SER SER D . n
B 2 131 VAL 131 121 121 VAL VAL D . n
B 2 132 PHE 132 122 122 PHE PHE D . n
B 2 133 PRO 133 123 123 PRO PRO D . n
B 2 134 LEU 134 124 124 LEU LEU D . n
B 2 135 ALA 135 125 125 ALA ALA D . n
B 2 136 PRO 136 126 126 PRO PRO D . n
B 2 137 SER 137 127 127 SER SER D . n
B 2 138 SER 138 128 ? ? ? D . n
B 2 139 LYS 139 129 ? ? ? D . n
B 2 140 SER 140 130 ? ? ? D . n
B 2 141 THR 141 131 ? ? ? D . n
B 2 142 SER 142 132 ? ? ? D . n
B 2 143 GLY 143 133 ? ? ? D . n
B 2 144 GLY 144 134 ? ? ? D . n
B 2 145 THR 145 135 135 THR THR D . n
B 2 146 ALA 146 136 136 ALA ALA D . n
B 2 147 ALA 147 137 137 ALA ALA D . n
B 2 148 LEU 148 138 138 LEU LEU D . n
B 2 149 GLY 149 139 139 GLY GLY D . n
B 2 150 CYS 150 140 140 CYS CYS D . n
B 2 151 LEU 151 141 141 LEU LEU D . n
B 2 152 VAL 152 142 142 VAL VAL D . n
B 2 153 LYS 153 143 143 LYS LYS D . n
B 2 154 ASP 154 144 144 ASP ASP D . n
B 2 155 TYR 155 145 145 TYR TYR D . n
B 2 156 PHE 156 146 146 PHE PHE D . n
B 2 157 PRO 157 147 147 PRO PRO D . n
B 2 158 GLU 158 148 148 GLU GLU D . n
B 2 159 PRO 159 149 149 PRO PRO D . n
B 2 160 VAL 160 150 150 VAL VAL D . n
B 2 161 THR 161 151 151 THR THR D . n
B 2 162 VAL 162 152 152 VAL VAL D . n
B 2 163 SER 163 153 153 SER SER D . n
B 2 164 TRP 164 154 154 TRP TRP D . n
B 2 165 ASN 165 155 155 ASN ASN D . n
B 2 166 SER 166 156 156 SER SER D . n
B 2 167 GLY 167 157 157 GLY GLY D . n
B 2 168 ALA 168 158 158 ALA ALA D . n
B 2 169 LEU 169 159 159 LEU LEU D . n
B 2 170 THR 170 160 160 THR THR D . n
B 2 171 SER 171 161 161 SER SER D . n
B 2 172 GLY 172 162 162 GLY GLY D . n
B 2 173 VAL 173 163 163 VAL VAL D . n
B 2 174 HIS 174 164 164 HIS HIS D . n
B 2 175 THR 175 165 165 THR THR D . n
B 2 176 PHE 176 166 166 PHE PHE D . n
B 2 177 PRO 177 167 167 PRO PRO D . n
B 2 178 ALA 178 168 168 ALA ALA D . n
B 2 179 VAL 179 169 169 VAL VAL D . n
B 2 180 LEU 180 170 170 LEU LEU D . n
B 2 181 GLN 181 171 171 GLN GLN D . n
B 2 182 SER 182 172 172 SER SER D . n
B 2 183 SER 183 173 173 SER SER D . n
B 2 184 GLY 184 174 174 GLY GLY D . n
B 2 185 LEU 185 175 175 LEU LEU D . n
B 2 186 TYR 186 176 176 TYR TYR D . n
B 2 187 SER 187 177 177 SER SER D . n
B 2 188 LEU 188 178 178 LEU LEU D . n
B 2 189 SER 189 179 179 SER SER D . n
B 2 190 SER 190 180 180 SER SER D . n
B 2 191 VAL 191 181 181 VAL VAL D . n
B 2 192 VAL 192 182 182 VAL VAL D . n
B 2 193 THR 193 183 183 THR THR D . n
B 2 194 VAL 194 184 184 VAL VAL D . n
B 2 195 PRO 195 185 185 PRO PRO D . n
B 2 196 SER 196 186 186 SER SER D . n
B 2 197 SER 197 187 187 SER SER D . n
B 2 198 SER 198 188 188 SER SER D . n
B 2 199 LEU 199 189 189 LEU LEU D . n
B 2 200 GLY 200 190 190 GLY GLY D . n
B 2 201 THR 201 191 191 THR THR D . n
B 2 202 GLN 202 192 192 GLN GLN D . n
B 2 203 THR 203 193 193 THR THR D . n
B 2 204 TYR 204 194 194 TYR TYR D . n
B 2 205 ILE 205 195 195 ILE ILE D . n
B 2 206 CYS 206 196 196 CYS CYS D . n
B 2 207 ASN 207 197 197 ASN ASN D . n
B 2 208 VAL 208 198 198 VAL VAL D . n
B 2 209 ASN 209 199 199 ASN ASN D . n
B 2 210 HIS 210 200 200 HIS HIS D . n
B 2 211 LYS 211 201 201 LYS LYS D . n
B 2 212 PRO 212 202 202 PRO PRO D . n
B 2 213 SER 213 203 203 SER SER D . n
B 2 214 ASN 214 204 204 ASN ASN D . n
B 2 215 THR 215 205 205 THR THR D . n
B 2 216 LYS 216 206 206 LYS LYS D . n
B 2 217 VAL 217 207 207 VAL VAL D . n
B 2 218 ASP 218 208 208 ASP ASP D . n
B 2 219 LYS 219 209 209 LYS LYS D . n
B 2 220 LYS 220 210 210 LYS LYS D . n
B 2 221 VAL 221 211 211 VAL VAL D . n
B 2 222 GLU 222 212 212 GLU GLU D . n
B 2 223 PRO 223 213 213 PRO PRO D . n
B 2 224 LYS 224 214 ? ? ? D . n
B 2 225 SER 225 215 ? ? ? D . n
B 2 226 CYS 226 216 ? ? ? D . n
B 2 227 ASP 227 217 ? ? ? D . n
B 2 228 LYS 228 218 ? ? ? D . n
C 3 1 GLU 1 1 1 GLU GLU E . n
C 3 2 ILE 2 2 2 ILE ILE E . n
C 3 3 VAL 3 3 3 VAL VAL E . n
C 3 4 LEU 4 4 4 LEU LEU E . n
C 3 5 THR 5 5 5 THR THR E . n
C 3 6 GLN 6 6 6 GLN GLN E . n
C 3 7 SER 7 7 7 SER SER E . n
C 3 8 PRO 8 8 8 PRO PRO E . n
C 3 9 GLY 9 9 9 GLY GLY E . n
C 3 10 THR 10 10 10 THR THR E . n
C 3 11 LEU 11 11 11 LEU LEU E . n
C 3 12 SER 12 12 12 SER SER E . n
C 3 13 LEU 13 13 13 LEU LEU E . n
C 3 14 SER 14 14 14 SER SER E . n
C 3 15 PRO 15 15 15 PRO PRO E . n
C 3 16 GLY 16 16 16 GLY GLY E . n
C 3 17 GLU 17 17 17 GLU GLU E . n
C 3 18 ARG 18 18 18 ARG ARG E . n
C 3 19 ALA 19 19 19 ALA ALA E . n
C 3 20 THR 20 20 20 THR THR E . n
C 3 21 LEU 21 21 21 LEU LEU E . n
C 3 22 SER 22 22 22 SER SER E . n
C 3 23 CYS 23 23 23 CYS CYS E . n
C 3 24 ARG 24 24 24 ARG ARG E . n
C 3 25 ALA 25 25 25 ALA ALA E . n
C 3 26 SER 26 26 26 SER SER E . n
C 3 27 GLN 27 27 27 GLN GLN E . n
C 3 28 SER 28 27 27 SER SER E A n
C 3 29 VAL 29 28 28 VAL VAL E . n
C 3 30 SER 30 29 29 SER SER E . n
C 3 31 SER 31 30 30 SER SER E . n
C 3 32 SER 32 31 31 SER SER E . n
C 3 33 TYR 33 32 32 TYR TYR E . n
C 3 34 LEU 34 33 33 LEU LEU E . n
C 3 35 ALA 35 34 34 ALA ALA E . n
C 3 36 TRP 36 35 35 TRP TRP E . n
C 3 37 TYR 37 36 36 TYR TYR E . n
C 3 38 GLN 38 37 37 GLN GLN E . n
C 3 39 GLN 39 38 38 GLN GLN E . n
C 3 40 LYS 40 39 39 LYS LYS E . n
C 3 41 PRO 41 40 40 PRO PRO E . n
C 3 42 GLY 42 41 41 GLY GLY E . n
C 3 43 GLN 43 42 42 GLN GLN E . n
C 3 44 ALA 44 43 43 ALA ALA E . n
C 3 45 PRO 45 44 44 PRO PRO E . n
C 3 46 ARG 46 45 45 ARG ARG E . n
C 3 47 LEU 47 46 46 LEU LEU E . n
C 3 48 LEU 48 47 47 LEU LEU E . n
C 3 49 ILE 49 48 48 ILE ILE E . n
C 3 50 TYR 50 49 49 TYR TYR E . n
C 3 51 SER 51 50 50 SER SER E . n
C 3 52 ALA 52 51 51 ALA ALA E . n
C 3 53 SER 53 52 52 SER SER E . n
C 3 54 SER 54 53 53 SER SER E . n
C 3 55 ARG 55 54 54 ARG ARG E . n
C 3 56 ALA 56 55 55 ALA ALA E . n
C 3 57 THR 57 56 56 THR THR E . n
C 3 58 GLY 58 57 57 GLY GLY E . n
C 3 59 ILE 59 58 58 ILE ILE E . n
C 3 60 PRO 60 59 59 PRO PRO E . n
C 3 61 ASP 61 60 60 ASP ASP E . n
C 3 62 ARG 62 61 61 ARG ARG E . n
C 3 63 PHE 63 62 62 PHE PHE E . n
C 3 64 SER 64 63 63 SER SER E . n
C 3 65 GLY 65 64 64 GLY GLY E . n
C 3 66 SER 66 65 65 SER SER E . n
C 3 67 GLY 67 66 66 GLY GLY E . n
C 3 68 SER 68 67 67 SER SER E . n
C 3 69 GLY 69 68 68 GLY GLY E . n
C 3 70 THR 70 69 69 THR THR E . n
C 3 71 ASP 71 70 70 ASP ASP E . n
C 3 72 PHE 72 71 71 PHE PHE E . n
C 3 73 THR 73 72 72 THR THR E . n
C 3 74 LEU 74 73 73 LEU LEU E . n
C 3 75 THR 75 74 74 THR THR E . n
C 3 76 ILE 76 75 75 ILE ILE E . n
C 3 77 SER 77 76 76 SER SER E . n
C 3 78 ARG 78 77 77 ARG ARG E . n
C 3 79 LEU 79 78 78 LEU LEU E . n
C 3 80 GLU 80 79 79 GLU GLU E . n
C 3 81 PRO 81 80 80 PRO PRO E . n
C 3 82 GLU 82 81 81 GLU GLU E . n
C 3 83 ASP 83 82 82 ASP ASP E . n
C 3 84 PHE 84 83 83 PHE PHE E . n
C 3 85 ALA 85 84 84 ALA ALA E . n
C 3 86 VAL 86 85 85 VAL VAL E . n
C 3 87 TYR 87 86 86 TYR TYR E . n
C 3 88 PHE 88 87 87 PHE PHE E . n
C 3 89 CYS 89 88 88 CYS CYS E . n
C 3 90 GLN 90 89 89 GLN GLN E . n
C 3 91 GLN 91 90 90 GLN GLN E . n
C 3 92 TYR 92 91 91 TYR TYR E . n
C 3 93 GLY 93 92 92 GLY GLY E . n
C 3 94 THR 94 93 93 THR THR E . n
C 3 95 SER 95 94 94 SER SER E . n
C 3 96 PRO 96 95 95 PRO PRO E . n
C 3 97 TRP 97 96 96 TRP TRP E . n
C 3 98 THR 98 97 97 THR THR E . n
C 3 99 PHE 99 98 98 PHE PHE E . n
C 3 100 GLY 100 99 99 GLY GLY E . n
C 3 101 GLN 101 100 100 GLN GLN E . n
C 3 102 GLY 102 101 101 GLY GLY E . n
C 3 103 THR 103 102 102 THR THR E . n
C 3 104 LYS 104 103 103 LYS LYS E . n
C 3 105 VAL 105 104 104 VAL VAL E . n
C 3 106 GLU 106 105 105 GLU GLU E . n
C 3 107 ILE 107 106 106 ILE ILE E . n
C 3 108 LYS 108 107 107 LYS LYS E . n
C 3 109 ARG 109 108 108 ARG ARG E . n
C 3 110 THR 110 109 109 THR THR E . n
C 3 111 VAL 111 110 110 VAL VAL E . n
C 3 112 ALA 112 111 111 ALA ALA E . n
C 3 113 ALA 113 112 112 ALA ALA E . n
C 3 114 PRO 114 113 113 PRO PRO E . n
C 3 115 SER 115 114 114 SER SER E . n
C 3 116 VAL 116 115 115 VAL VAL E . n
C 3 117 PHE 117 116 116 PHE PHE E . n
C 3 118 ILE 118 117 117 ILE ILE E . n
C 3 119 PHE 119 118 118 PHE PHE E . n
C 3 120 PRO 120 119 119 PRO PRO E . n
C 3 121 PRO 121 120 120 PRO PRO E . n
C 3 122 SER 122 121 121 SER SER E . n
C 3 123 ASP 123 122 122 ASP ASP E . n
C 3 124 GLU 124 123 123 GLU GLU E . n
C 3 125 GLN 125 124 124 GLN GLN E . n
C 3 126 LEU 126 125 125 LEU LEU E . n
C 3 127 LYS 127 126 126 LYS LYS E . n
C 3 128 SER 128 127 127 SER SER E . n
C 3 129 GLY 129 128 128 GLY GLY E . n
C 3 130 THR 130 129 129 THR THR E . n
C 3 131 ALA 131 130 130 ALA ALA E . n
C 3 132 SER 132 131 131 SER SER E . n
C 3 133 VAL 133 132 132 VAL VAL E . n
C 3 134 VAL 134 133 133 VAL VAL E . n
C 3 135 CYS 135 134 134 CYS CYS E . n
C 3 136 LEU 136 135 135 LEU LEU E . n
C 3 137 LEU 137 136 136 LEU LEU E . n
C 3 138 ASN 138 137 137 ASN ASN E . n
C 3 139 ASN 139 138 138 ASN ASN E . n
C 3 140 PHE 140 139 139 PHE PHE E . n
C 3 141 TYR 141 140 140 TYR TYR E . n
C 3 142 PRO 142 141 141 PRO PRO E . n
C 3 143 ARG 143 142 142 ARG ARG E . n
C 3 144 GLU 144 143 143 GLU GLU E . n
C 3 145 ALA 145 144 144 ALA ALA E . n
C 3 146 LYS 146 145 145 LYS LYS E . n
C 3 147 VAL 147 146 146 VAL VAL E . n
C 3 148 GLN 148 147 147 GLN GLN E . n
C 3 149 TRP 149 148 148 TRP TRP E . n
C 3 150 LYS 150 149 149 LYS LYS E . n
C 3 151 VAL 151 150 150 VAL VAL E . n
C 3 152 ASP 152 151 151 ASP ASP E . n
C 3 153 ASN 153 152 152 ASN ASN E . n
C 3 154 ALA 154 153 153 ALA ALA E . n
C 3 155 LEU 155 154 154 LEU LEU E . n
C 3 156 GLN 156 155 155 GLN GLN E . n
C 3 157 SER 157 156 156 SER SER E . n
C 3 158 GLY 158 157 157 GLY GLY E . n
C 3 159 ASN 159 158 158 ASN ASN E . n
C 3 160 SER 160 159 159 SER SER E . n
C 3 161 GLN 161 160 160 GLN GLN E . n
C 3 162 GLU 162 161 161 GLU GLU E . n
C 3 163 SER 163 162 162 SER SER E . n
C 3 164 VAL 164 163 163 VAL VAL E . n
C 3 165 THR 165 164 164 THR THR E . n
C 3 166 GLU 166 165 165 GLU GLU E . n
C 3 167 GLN 167 166 166 GLN GLN E . n
C 3 168 ASP 168 167 167 ASP ASP E . n
C 3 169 SER 169 168 168 SER SER E . n
C 3 170 LYS 170 169 169 LYS LYS E . n
C 3 171 ASP 171 170 170 ASP ASP E . n
C 3 172 SER 172 171 171 SER SER E . n
C 3 173 THR 173 172 172 THR THR E . n
C 3 174 TYR 174 173 173 TYR TYR E . n
C 3 175 SER 175 174 174 SER SER E . n
C 3 176 LEU 176 175 175 LEU LEU E . n
C 3 177 SER 177 176 176 SER SER E . n
C 3 178 SER 178 177 177 SER SER E . n
C 3 179 THR 179 178 178 THR THR E . n
C 3 180 LEU 180 179 179 LEU LEU E . n
C 3 181 THR 181 180 180 THR THR E . n
C 3 182 LEU 182 181 181 LEU LEU E . n
C 3 183 SER 183 182 182 SER SER E . n
C 3 184 LYS 184 183 183 LYS LYS E . n
C 3 185 ALA 185 184 184 ALA ALA E . n
C 3 186 ASP 186 185 185 ASP ASP E . n
C 3 187 TYR 187 186 186 TYR TYR E . n
C 3 188 GLU 188 187 187 GLU GLU E . n
C 3 189 LYS 189 188 188 LYS LYS E . n
C 3 190 HIS 190 189 189 HIS HIS E . n
C 3 191 LYS 191 190 190 LYS LYS E . n
C 3 192 VAL 192 191 191 VAL VAL E . n
C 3 193 TYR 193 192 192 TYR TYR E . n
C 3 194 ALA 194 193 193 ALA ALA E . n
C 3 195 CYS 195 194 194 CYS CYS E . n
C 3 196 GLU 196 195 195 GLU GLU E . n
C 3 197 VAL 197 196 196 VAL VAL E . n
C 3 198 THR 198 197 197 THR THR E . n
C 3 199 HIS 199 198 198 HIS HIS E . n
C 3 200 GLN 200 199 199 GLN GLN E . n
C 3 201 GLY 201 200 200 GLY GLY E . n
C 3 202 LEU 202 201 201 LEU LEU E . n
C 3 203 SER 203 202 202 SER SER E . n
C 3 204 SER 204 203 203 SER SER E . n
C 3 205 PRO 205 204 204 PRO PRO E . n
C 3 206 VAL 206 205 205 VAL VAL E . n
C 3 207 THR 207 206 206 THR THR E . n
C 3 208 LYS 208 207 207 LYS LYS E . n
C 3 209 SER 209 208 208 SER SER E . n
C 3 210 PHE 210 209 209 PHE PHE E . n
C 3 211 ASN 211 210 210 ASN ASN E . n
C 3 212 ARG 212 211 211 ARG ARG E . n
C 3 213 GLY 213 212 212 GLY GLY E . n
C 3 214 GLU 214 213 ? ? ? E . n
C 3 215 CYS 215 214 ? ? ? E . n
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
D 4 NAG 1 A NAG 1 C NAG 2555 n
D 4 NAG 2 A NAG 2 C NAG 2556 n
D 4 BMA 3 A BMA 3 C BMA 2557 n
D 4 MAN 4 A MAN 4 C MAN 2558 n
D 4 MAN 5 A MAN 5 C MAN 2559 n
E 5 NAG 1 B NAG 1 D NAG 214 n
E 5 NAG 2 B NAG 2 D NAG 215 n
E 5 BMA 3 B BMA 3 D BMA 216 n
#
_pdbx_unobs_or_zero_occ_atoms.id 1
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1
_pdbx_unobs_or_zero_occ_atoms.polymer_flag Y
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id D
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id SER
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id 113
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ?
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id OG
_pdbx_unobs_or_zero_occ_atoms.label_alt_id ?
_pdbx_unobs_or_zero_occ_atoms.label_asym_id B
_pdbx_unobs_or_zero_occ_atoms.label_comp_id SER
_pdbx_unobs_or_zero_occ_atoms.label_seq_id 123
_pdbx_unobs_or_zero_occ_atoms.label_atom_id OG
#
_software.citation_id ?
_software.classification refinement
_software.compiler_name ?
_software.compiler_version ?
_software.contact_author ?
_software.contact_author_email ?
_software.date ?
_software.description ?
_software.dependencies ?
_software.hardware ?
_software.language ?
_software.location ?
_software.mods ?
_software.name PHENIX
_software.os ?
_software.os_version ?
_software.type ?
_software.version 1.19_4092:
_software.pdbx_ordinal 1
#
_cell.angle_alpha 90.00
_cell.angle_alpha_esd ?
_cell.angle_beta 90.00
_cell.angle_beta_esd ?
_cell.angle_gamma 90.00
_cell.angle_gamma_esd ?
_cell.entry_id 7LRS
_cell.details ?
_cell.formula_units_Z ?
_cell.length_a 1.00
_cell.length_a_esd ?
_cell.length_b 1.00
_cell.length_b_esd ?
_cell.length_c 1.00
_cell.length_c_esd ?
_cell.volume ?
_cell.volume_esd ?
_cell.Z_PDB ?
_cell.reciprocal_angle_alpha ?
_cell.reciprocal_angle_beta ?
_cell.reciprocal_angle_gamma ?
_cell.reciprocal_angle_alpha_esd ?
_cell.reciprocal_angle_beta_esd ?
_cell.reciprocal_angle_gamma_esd ?
_cell.reciprocal_length_a ?
_cell.reciprocal_length_b ?
_cell.reciprocal_length_c ?
_cell.reciprocal_length_a_esd ?
_cell.reciprocal_length_b_esd ?
_cell.reciprocal_length_c_esd ?
_cell.pdbx_unique_axis ?
#
_symmetry.entry_id 7LRS
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 1
_symmetry.space_group_name_Hall ?
_symmetry.space_group_name_H-M 'P 1'
_symmetry.pdbx_full_space_group_name_H-M ?
#
_exptl.absorpt_coefficient_mu ?
_exptl.absorpt_correction_T_max ?
_exptl.absorpt_correction_T_min ?
_exptl.absorpt_correction_type ?
_exptl.absorpt_process_details ?
_exptl.entry_id 7LRS
_exptl.crystals_number ?
_exptl.details ?
_exptl.method 'ELECTRON MICROSCOPY'
_exptl.method_details ?
#
_refine.aniso_B[1][1] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[2][3] ?
_refine.aniso_B[3][3] ?
_refine.B_iso_max ?
_refine.B_iso_mean ?
_refine.B_iso_min ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.details ?
_refine.diff_density_max ?
_refine.diff_density_max_esd ?
_refine.diff_density_min ?
_refine.diff_density_min_esd ?
_refine.diff_density_rms ?
_refine.diff_density_rms_esd ?
_refine.entry_id 7LRS
_refine.pdbx_refine_id 'ELECTRON MICROSCOPY'
_refine.ls_abs_structure_details ?
_refine.ls_abs_structure_Flack ?
_refine.ls_abs_structure_Flack_esd ?
_refine.ls_abs_structure_Rogers ?
_refine.ls_abs_structure_Rogers_esd ?
_refine.ls_d_res_high .
_refine.ls_d_res_low ?
_refine.ls_extinction_coef ?
_refine.ls_extinction_coef_esd ?
_refine.ls_extinction_expression ?
_refine.ls_extinction_method ?
_refine.ls_goodness_of_fit_all ?
_refine.ls_goodness_of_fit_all_esd ?
_refine.ls_goodness_of_fit_obs ?
_refine.ls_goodness_of_fit_obs_esd ?
_refine.ls_hydrogen_treatment ?
_refine.ls_matrix_type ?
_refine.ls_number_constraints ?
_refine.ls_number_parameters ?
_refine.ls_number_reflns_all ?
_refine.ls_number_reflns_obs ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_reflns_R_work ?
_refine.ls_number_restraints ?
_refine.ls_percent_reflns_obs ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs ?
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_R_factor_R_work ?
_refine.ls_R_Fsqd_factor_obs ?
_refine.ls_R_I_factor_obs ?
_refine.ls_redundancy_reflns_all ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_restrained_S_all ?
_refine.ls_restrained_S_obs ?
_refine.ls_shift_over_esd_max ?
_refine.ls_shift_over_esd_mean ?
_refine.ls_structure_factor_coef ?
_refine.ls_weighting_details ?
_refine.ls_weighting_scheme ?
_refine.ls_wR_factor_all ?
_refine.ls_wR_factor_obs ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.occupancy_max ?
_refine.occupancy_min ?
_refine.solvent_model_details ?
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_R_complete ?
_refine.ls_R_factor_gt ?
_refine.ls_goodness_of_fit_gt ?
_refine.ls_goodness_of_fit_ref ?
_refine.ls_shift_over_su_max ?
_refine.ls_shift_over_su_max_lt ?
_refine.ls_shift_over_su_mean ?
_refine.ls_shift_over_su_mean_lt ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F ?
_refine.pdbx_ls_sigma_Fsqd ?
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_ls_cross_valid_method ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_starting_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_real_space_R ?
_refine.pdbx_density_correlation ?
_refine.pdbx_pd_number_of_powder_patterns ?
_refine.pdbx_pd_number_of_points ?
_refine.pdbx_pd_meas_number_of_points ?
_refine.pdbx_pd_proc_ls_prof_R_factor ?
_refine.pdbx_pd_proc_ls_prof_wR_factor ?
_refine.pdbx_pd_Marquardt_correlation_coeff ?
_refine.pdbx_pd_Fsqrd_R_factor ?
_refine.pdbx_pd_ls_matrix_band_width ?
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_diffrn_id ?
_refine.overall_SU_B ?
_refine.overall_SU_ML ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_average_fsc_overall ?
_refine.pdbx_average_fsc_work ?
_refine.pdbx_average_fsc_free ?
#
loop_
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.criterion
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.number
_refine_ls_restr.rejects
_refine_ls_restr.type
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
'ELECTRON MICROSCOPY' ? 0.003 ? 5030 ? f_bond_d ? ?
'ELECTRON MICROSCOPY' ? 0.617 ? 6847 ? f_angle_d ? ?
'ELECTRON MICROSCOPY' ? 5.478 ? 741 ? f_dihedral_angle_d ? ?
'ELECTRON MICROSCOPY' ? 0.045 ? 786 ? f_chiral_restr ? ?
'ELECTRON MICROSCOPY' ? 0.005 ? 869 ? f_plane_restr ? ?
#
_struct.entry_id 7LRS
_struct.title
'Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain'
_struct.pdbx_model_details ?
_struct.pdbx_formula_weight ?
_struct.pdbx_formula_weight_method ?
_struct.pdbx_model_type_details ?
_struct.pdbx_CASP_flag N
#
_struct_keywords.entry_id 7LRS
_struct_keywords.text 'SARS-CoV-2, Receptor-binding domain, antibody, VIRAL PROTEIN-IMMUNE SYSTEM complex'
_struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 5 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 UNP SPIKE_SARS2 P0DTC2 ? 1
;ITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIA
PGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFP
LQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGP
;
332
2 PDB 7LRS 7LRS ? 2 ? 1
3 PDB 7LRS 7LRS ? 3 ? 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 7LRS C 1 ? 196 ? P0DTC2 332 ? 527 ? 332 527
2 2 7LRS D 1 ? 228 ? 7LRS 1 ? 218 ? 1 218
3 3 7LRS E 1 ? 215 ? 7LRS 1 ? 214 ? 1 214
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details trimeric
_pdbx_struct_assembly.oligomeric_count 3
#
loop_
_pdbx_struct_assembly_prop.biol_id
_pdbx_struct_assembly_prop.type
_pdbx_struct_assembly_prop.value
_pdbx_struct_assembly_prop.details
1 'ABSA (A^2)' 5550 ?
1 MORE -12 ?
1 'SSA (A^2)' 33380 ?
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
_pdbx_struct_assembly_auth_evidence.id 1
_pdbx_struct_assembly_auth_evidence.assembly_id 1
_pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration'
_pdbx_struct_assembly_auth_evidence.details ?
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation ?
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 AA1 PRO A 6 ? ASN A 12 ? PRO C 337 ASN C 343 1 ? 7
HELX_P HELX_P2 AA2 SER A 35 ? SER A 40 ? SER C 366 SER C 371 1 ? 6
HELX_P HELX_P3 AA3 ARG B 87 ? THR B 91 ? ARG D 83 THR D 87 5 ? 5
HELX_P HELX_P4 AA4 HIS C 199 ? SER C 203 ? HIS E 198 SER E 202 5 ? 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 30 SG ? ? C CYS 336 C CYS 361 1_555 ? ? ? ? ? ? ? 2.026 ? ?
disulf2 disulf ? ? A CYS 48 SG ? ? ? 1_555 A CYS 101 SG ? ? C CYS 379 C CYS 432 1_555 ? ? ? ? ? ? ? 2.034 ? ?
disulf3 disulf ? ? A CYS 60 SG ? ? ? 1_555 A CYS 194 SG ? ? C CYS 391 C CYS 525 1_555 ? ? ? ? ? ? ? 2.029 ? ?
disulf4 disulf ? ? A CYS 149 SG ? ? ? 1_555 A CYS 157 SG ? ? C CYS 480 C CYS 488 1_555 ? ? ? ? ? ? ? 2.032 ? ?
disulf5 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 96 SG ? ? D CYS 22 D CYS 92 1_555 ? ? ? ? ? ? ? 2.033 ? ?
disulf6 disulf ? ? B CYS 101 SG ? ? ? 1_555 B CYS 106 SG ? B D CYS 97 D CYS 100 1_555 ? ? ? ? ? ? ? 2.032 ? ?
disulf7 disulf ? ? B CYS 150 SG ? ? ? 1_555 B CYS 206 SG ? ? D CYS 140 D CYS 196 1_555 ? ? ? ? ? ? ? 2.035 ? ?
disulf8 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 89 SG ? ? E CYS 23 E CYS 88 1_555 ? ? ? ? ? ? ? 2.030 ? ?
disulf9 disulf ? ? C CYS 135 SG ? ? ? 1_555 C CYS 195 SG ? ? E CYS 134 E CYS 194 1_555 ? ? ? ? ? ? ? 2.035 ? ?
covale1 covale one ? A ASN 12 ND2 ? ? ? 1_555 D NAG . C1 ? ? C ASN 343 A NAG 1 1_555 ? ? ? ? ? ? ? 1.442 ? N-Glycosylation
covale2 covale one ? B ASN 100 ND2 ? ? ? 1_555 E NAG . C1 ? ? D ASN 96 B NAG 1 1_555 ? ? ? ? ? ? ? 1.437 ? N-Glycosylation
covale3 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? A NAG 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.443 ? ?
covale4 covale both ? D NAG . O4 ? ? ? 1_555 D BMA . C1 ? ? A NAG 2 A BMA 3 1_555 ? ? ? ? ? ? ? 1.444 ? ?
covale5 covale both ? D BMA . O3 ? ? ? 1_555 D MAN . C1 ? ? A BMA 3 A MAN 4 1_555 ? ? ? ? ? ? ? 1.446 ? ?
covale6 covale both ? D BMA . O6 ? ? ? 1_555 D MAN . C1 ? ? A BMA 3 A MAN 5 1_555 ? ? ? ? ? ? ? 1.449 ? ?
covale7 covale both ? E NAG . O4 ? ? ? 1_555 E NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.439 ? ?
covale8 covale both ? E NAG . O4 ? ? ? 1_555 E BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.443 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 NAG D . ? ASN A 12 ? NAG A 1 ? 1_555 ASN C 343 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
2 NAG E . ? ASN B 100 ? NAG B 1 ? 1_555 ASN D 96 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate
3 CYS A 5 ? CYS A 30 ? CYS C 336 ? 1_555 CYS C 361 ? 1_555 SG SG . . . None 'Disulfide bridge'
4 CYS A 48 ? CYS A 101 ? CYS C 379 ? 1_555 CYS C 432 ? 1_555 SG SG . . . None 'Disulfide bridge'
5 CYS A 60 ? CYS A 194 ? CYS C 391 ? 1_555 CYS C 525 ? 1_555 SG SG . . . None 'Disulfide bridge'
6 CYS A 149 ? CYS A 157 ? CYS C 480 ? 1_555 CYS C 488 ? 1_555 SG SG . . . None 'Disulfide bridge'
7 CYS B 22 ? CYS B 96 ? CYS D 22 ? 1_555 CYS D 92 ? 1_555 SG SG . . . None 'Disulfide bridge'
8 CYS B 101 ? CYS B 106 ? CYS D 97 ? 1_555 CYS D 100 B 1_555 SG SG . . . None 'Disulfide bridge'
9 CYS B 150 ? CYS B 206 ? CYS D 140 ? 1_555 CYS D 196 ? 1_555 SG SG . . . None 'Disulfide bridge'
10 CYS C 23 ? CYS C 89 ? CYS E 23 ? 1_555 CYS E 88 ? 1_555 SG SG . . . None 'Disulfide bridge'
11 CYS C 135 ? CYS C 195 ? CYS E 134 ? 1_555 CYS E 194 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
_struct_mon_prot_cis.pdbx_id 1
_struct_mon_prot_cis.label_comp_id SER
_struct_mon_prot_cis.label_seq_id 95
_struct_mon_prot_cis.label_asym_id C
_struct_mon_prot_cis.label_alt_id .
_struct_mon_prot_cis.pdbx_PDB_ins_code ?
_struct_mon_prot_cis.auth_comp_id SER
_struct_mon_prot_cis.auth_seq_id 94
_struct_mon_prot_cis.auth_asym_id E
_struct_mon_prot_cis.pdbx_label_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_label_seq_id_2 96
_struct_mon_prot_cis.pdbx_label_asym_id_2 C
_struct_mon_prot_cis.pdbx_PDB_ins_code_2 ?
_struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_auth_seq_id_2 95
_struct_mon_prot_cis.pdbx_auth_asym_id_2 E
_struct_mon_prot_cis.pdbx_PDB_model_num 1
_struct_mon_prot_cis.pdbx_omega_angle -5.31
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
AA1 ? 4 ?
AA2 ? 2 ?
AA3 ? 4 ?
AA4 ? 2 ?
AA5 ? 3 ?
AA6 ? 2 ?
AA7 ? 2 ?
AA8 ? 2 ?
AA9 ? 4 ?
AB1 ? 4 ?
AB2 ? 2 ?
AB3 ? 2 ?
AB4 ? 2 ?
AB5 ? 3 ?
AB6 ? 4 ?
AB7 ? 2 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
AA1 1 2 ? anti-parallel
AA1 2 3 ? anti-parallel
AA1 3 4 ? anti-parallel
AA2 1 2 ? anti-parallel
AA3 1 2 ? anti-parallel
AA3 2 3 ? anti-parallel
AA3 3 4 ? anti-parallel
AA4 1 2 ? parallel
AA5 1 2 ? anti-parallel
AA5 2 3 ? anti-parallel
AA6 1 2 ? anti-parallel
AA7 1 2 ? anti-parallel
AA8 1 2 ? anti-parallel
AA9 1 2 ? anti-parallel
AA9 2 3 ? anti-parallel
AA9 3 4 ? anti-parallel
AB1 1 2 ? anti-parallel
AB1 2 3 ? anti-parallel
AB1 3 4 ? anti-parallel
AB2 1 2 ? anti-parallel
AB3 1 2 ? parallel
AB4 1 2 ? anti-parallel
AB5 1 2 ? anti-parallel
AB5 2 3 ? anti-parallel
AB6 1 2 ? anti-parallel
AB6 2 3 ? anti-parallel
AB6 3 4 ? anti-parallel
AB7 1 2 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
AA1 1 ARG A 26 ? ILE A 27 ? ARG C 357 ILE C 358
AA1 2 VAL A 64 ? ILE A 71 ? VAL C 395 ILE C 402
AA1 3 TYR A 177 ? LEU A 182 ? TYR C 508 LEU C 513
AA1 4 VAL A 102 ? TRP A 105 ? VAL C 433 TRP C 436
AA2 1 LEU A 121 ? ARG A 123 ? LEU C 452 ARG C 454
AA2 2 LEU A 161 ? SER A 163 ? LEU C 492 SER C 494
AA3 1 GLN B 3 ? GLN B 6 ? GLN D 3 GLN D 6
AA3 2 VAL B 20 ? SER B 25 ? VAL D 20 SER D 25
AA3 3 TYR B 80 ? LEU B 83 ? TYR D 79 LEU D 82
AA3 4 VAL B 68 ? THR B 69 ? VAL D 67 THR D 68
AA4 1 GLU B 10 ? LYS B 12 ? GLU D 10 LYS D 12
AA4 2 VAL B 119 ? VAL B 121 ? VAL D 109 VAL D 111
AA5 1 ALA B 33 ? TRP B 36 ? ALA D 33 TRP D 36
AA5 2 GLY B 49 ? VAL B 52 ? GLY D 49 VAL D 52
AA5 3 THR B 58 ? TYR B 60 ? THR D 57 TYR D 59
AA6 1 ARG B 38 ? GLN B 39 ? ARG D 38 GLN D 39
AA6 2 VAL B 93 ? TYR B 94 ? VAL D 89 TYR D 90
AA7 1 ALA B 97 ? ALA B 98 ? ALA D 93 ALA D 94
AA7 2 ILE B 112 ? TRP B 113 ? ILE D 102 TRP D 103
AA8 1 CYS B 101 ? SER B 102 ? CYS D 97 SER D 98
AA8 2 VAL B 105 A CYS B 106 B VAL D 100 CYS D 100
AA9 1 SER B 130 ? LEU B 134 ? SER D 120 LEU D 124
AA9 2 ALA B 147 ? TYR B 155 ? ALA D 137 TYR D 145
AA9 3 TYR B 186 ? THR B 193 ? TYR D 176 THR D 183
AA9 4 HIS B 174 ? THR B 175 ? HIS D 164 THR D 165
AB1 1 SER B 130 ? LEU B 134 ? SER D 120 LEU D 124
AB1 2 ALA B 147 ? TYR B 155 ? ALA D 137 TYR D 145
AB1 3 TYR B 186 ? THR B 193 ? TYR D 176 THR D 183
AB1 4 VAL B 179 ? LEU B 180 ? VAL D 169 LEU D 170
AB2 1 THR B 161 ? VAL B 162 ? THR D 151 VAL D 152
AB2 2 VAL B 208 ? ASN B 209 ? VAL D 198 ASN D 199
AB3 1 THR C 10 ? SER C 12 ? THR E 10 SER E 12
AB3 2 LYS C 104 ? GLU C 106 ? LYS E 103 GLU E 105
AB4 1 THR C 20 ? SER C 22 ? THR E 20 SER E 22
AB4 2 THR C 73 ? THR C 75 ? THR E 72 THR E 74
AB5 1 ARG C 46 ? TYR C 50 ? ARG E 45 TYR E 49
AB5 2 LEU C 34 ? GLN C 39 ? LEU E 33 GLN E 38
AB5 3 VAL C 86 ? GLN C 91 ? VAL E 85 GLN E 90
AB6 1 SER C 115 ? PHE C 119 ? SER E 114 PHE E 118
AB6 2 VAL C 133 ? PHE C 140 ? VAL E 132 PHE E 139
AB6 3 TYR C 174 ? LEU C 180 ? TYR E 173 LEU E 179
AB6 4 SER C 160 ? VAL C 164 ? SER E 159 VAL E 163
AB7 1 LYS C 146 ? TRP C 149 ? LYS E 145 TRP E 148
AB7 2 CYS C 195 ? THR C 198 ? CYS E 194 THR E 197
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
AA1 1 2 N ILE A 27 ? N ILE C 358 O VAL A 64 ? O VAL C 395
AA1 2 3 N ASP A 67 ? N ASP C 398 O VAL A 181 ? O VAL C 512
AA1 3 4 O VAL A 180 ? O VAL C 511 N ILE A 103 ? N ILE C 434
AA2 1 2 N TYR A 122 ? N TYR C 453 O GLN A 162 ? O GLN C 493
AA3 1 2 N VAL B 5 ? N VAL D 5 O LYS B 23 ? O LYS D 23
AA3 2 3 N VAL B 20 ? N VAL D 20 O MET B 81 ? O MET D 80
AA3 3 4 O GLU B 82 ? O GLU D 81 N THR B 69 ? N THR D 68
AA4 1 2 N LYS B 12 ? N LYS D 12 O THR B 120 ? O THR D 110
AA5 1 2 N TRP B 36 ? N TRP D 36 O GLY B 49 ? O GLY D 49
AA5 2 3 N TRP B 50 ? N TRP D 50 O ASN B 59 ? O ASN D 58
AA6 1 2 N GLN B 39 ? N GLN D 39 O VAL B 93 ? O VAL D 89
AA7 1 2 N ALA B 98 ? N ALA D 94 O ILE B 112 ? O ILE D 102
AA8 1 2 N SER B 102 ? N SER D 98 O VAL B 105 A O VAL D 100
AA9 1 2 N PHE B 132 ? N PHE D 122 O LEU B 151 ? O LEU D 141
AA9 2 3 N LEU B 148 ? N LEU D 138 O VAL B 192 ? O VAL D 182
AA9 3 4 O VAL B 191 ? O VAL D 181 N HIS B 174 ? N HIS D 164
AB1 1 2 N PHE B 132 ? N PHE D 122 O LEU B 151 ? O LEU D 141
AB1 2 3 N LEU B 148 ? N LEU D 138 O VAL B 192 ? O VAL D 182
AB1 3 4 O SER B 187 ? O SER D 177 N VAL B 179 ? N VAL D 169
AB2 1 2 N THR B 161 ? N THR D 151 O ASN B 209 ? O ASN D 199
AB3 1 2 N LEU C 11 ? N LEU E 11 O LYS C 104 ? O LYS E 103
AB4 1 2 N LEU C 21 ? N LEU E 21 O LEU C 74 ? O LEU E 73
AB5 1 2 O ARG C 46 ? O ARG E 45 N GLN C 38 ? N GLN E 37
AB5 2 3 N TYR C 37 ? N TYR E 36 O PHE C 88 ? O PHE E 87
AB6 1 2 N PHE C 119 ? N PHE E 118 O VAL C 134 ? O VAL E 133
AB6 2 3 N LEU C 137 ? N LEU E 136 O LEU C 176 ? O LEU E 175
AB6 3 4 O THR C 179 ? O THR E 178 N GLN C 161 ? N GLN E 160
AB7 1 2 N GLN C 148 ? N GLN E 147 O GLU C 196 ? O GLU E 195
#
_pdbx_entry_details.entry_id 7LRS
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest N
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_close_contact.id 1
_pdbx_validate_close_contact.PDB_model_num 1
_pdbx_validate_close_contact.auth_atom_id_1 OD2
_pdbx_validate_close_contact.auth_asym_id_1 E
_pdbx_validate_close_contact.auth_comp_id_1 ASP
_pdbx_validate_close_contact.auth_seq_id_1 82
_pdbx_validate_close_contact.PDB_ins_code_1 ?
_pdbx_validate_close_contact.label_alt_id_1 ?
_pdbx_validate_close_contact.auth_atom_id_2 OH
_pdbx_validate_close_contact.auth_asym_id_2 E
_pdbx_validate_close_contact.auth_comp_id_2 TYR
_pdbx_validate_close_contact.auth_seq_id_2 86
_pdbx_validate_close_contact.PDB_ins_code_2 ?
_pdbx_validate_close_contact.label_alt_id_2 ?
_pdbx_validate_close_contact.dist 2.18
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 THR C 333 ? ? 46.50 -155.28
2 1 ALA C 348 ? ? 178.18 175.01
3 1 TYR C 365 ? ? -82.68 49.80
4 1 TYR C 380 ? ? -46.73 152.45
5 1 GLN C 414 ? ? 67.32 148.90
6 1 ASN C 487 ? ? 47.23 26.78
7 1 SER C 514 ? ? -160.40 -169.32
8 1 LYS D 12 ? ? -127.59 -168.84
9 1 SER D 54 ? ? 73.56 139.78
10 1 ARG D 66 ? ? 68.70 -3.17
11 1 ASP D 72 ? ? 67.01 148.57
12 1 ALA D 88 ? ? -160.44 -169.63
13 1 ASN D 99 ? ? 58.87 -94.95
14 1 ASN D 155 ? ? 67.89 -3.50
15 1 GLN D 192 ? ? 67.21 -172.97
16 1 LYS D 201 ? ? -143.03 -34.10
17 1 ASN D 204 ? ? -100.59 67.67
18 1 ALA E 51 ? ? 63.46 -70.66
19 1 SER E 53 ? ? -167.87 -169.03
20 1 ALA E 55 ? ? -78.93 -167.27
21 1 ALA E 84 ? ? -162.62 -169.18
22 1 VAL E 110 ? ? 35.10 97.64
23 1 ASN E 138 ? ? 60.37 64.95
24 1 SER E 202 ? ? 55.33 -111.32
#
_em_3d_fitting.entry_id 7LRS
_em_3d_fitting.id 1
_em_3d_fitting.details ?
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.ref_protocol OTHER
_em_3d_fitting.ref_space REAL
_em_3d_fitting.target_criteria ?
_em_3d_fitting.method ?
#
_em_3d_fitting_list.3d_fitting_id 1
_em_3d_fitting_list.id 1
_em_3d_fitting_list.details ?
_em_3d_fitting_list.pdb_chain_id ?
_em_3d_fitting_list.pdb_chain_residue_range ?
_em_3d_fitting_list.pdb_entry_id 7KMS
_em_3d_fitting_list.initial_refinement_model_id 1
_em_3d_fitting_list.chain_id ?
_em_3d_fitting_list.chain_residue_range ?
_em_3d_fitting_list.source_name PDB
_em_3d_fitting_list.type 'experimental model'
_em_3d_fitting_list.accession_code 7KMS
#
_em_3d_reconstruction.entry_id 7LRS
_em_3d_reconstruction.id 1
_em_3d_reconstruction.algorithm 'FOURIER SPACE'
_em_3d_reconstruction.details ?
_em_3d_reconstruction.refinement_type ?
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.num_class_averages 1
_em_3d_reconstruction.num_particles 123016
_em_3d_reconstruction.resolution 3.89
_em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF'
_em_3d_reconstruction.symmetry_type POINT
_em_3d_reconstruction.method ?
_em_3d_reconstruction.nominal_pixel_size ?
_em_3d_reconstruction.actual_pixel_size ?
_em_3d_reconstruction.magnification_calibration ?
#
_em_buffer.id 1
_em_buffer.details '100 mM HEPES, pH 7.4, 150 mM NaCl'
_em_buffer.pH 7.4
_em_buffer.specimen_id 1
_em_buffer.name ?
#
_em_entity_assembly.id 1
_em_entity_assembly.parent_id 0
_em_entity_assembly.details
'The complex was prepared by mixing SARS-CoV-2 spike protein and Fab fragment of antibody A789-58.1 at a molar ratio of 1:3.6.'
_em_entity_assembly.name 'SARS-CoV-2 spike in complex with neutralizing antibody A789-58.1'
_em_entity_assembly.source 'MULTIPLE SOURCES'
_em_entity_assembly.type COMPLEX
_em_entity_assembly.entity_id_list '1, 2, 3'
_em_entity_assembly.synonym ?
_em_entity_assembly.oligomeric_details ?
#
_em_imaging.id 1
_em_imaging.entry_id 7LRS
_em_imaging.accelerating_voltage 300
_em_imaging.alignment_procedure ?
_em_imaging.c2_aperture_diameter 100
_em_imaging.calibrated_defocus_max ?
_em_imaging.calibrated_defocus_min ?
_em_imaging.calibrated_magnification ?
_em_imaging.cryogen NITROGEN
_em_imaging.details ?
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.microscope_model 'FEI TITAN KRIOS'
_em_imaging.mode 'BRIGHT FIELD'
_em_imaging.nominal_cs 2.7
_em_imaging.nominal_defocus_max 2100
_em_imaging.nominal_defocus_min 1100
_em_imaging.nominal_magnification 105000
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.residual_tilt ?
_em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER'
_em_imaging.specimen_id 1
_em_imaging.citation_id ?
_em_imaging.date ?
_em_imaging.temperature ?
_em_imaging.tilt_angle_min ?
_em_imaging.tilt_angle_max ?
_em_imaging.astigmatism ?
_em_imaging.detector_distance ?
_em_imaging.electron_beam_tilt_params ?
_em_imaging.specimen_holder_type ?
#
_em_vitrification.id 1
_em_vitrification.specimen_id 1
_em_vitrification.chamber_temperature 277
_em_vitrification.cryogen_name ETHANE
_em_vitrification.details 'Blot for 1.5 seconds before plugging.'
_em_vitrification.humidity 95
_em_vitrification.instrument 'FEI VITROBOT MARK IV'
_em_vitrification.entry_id 7LRS
_em_vitrification.citation_id ?
_em_vitrification.method ?
_em_vitrification.temp ?
_em_vitrification.time_resolved_state ?
#
_em_experiment.entry_id 7LRS
_em_experiment.id 1
_em_experiment.aggregation_state PARTICLE
_em_experiment.reconstruction_method 'SINGLE PARTICLE'
_em_experiment.entity_assembly_id 1
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 D SER 128 ? B SER 138
2 1 Y 1 D LYS 129 ? B LYS 139
3 1 Y 1 D SER 130 ? B SER 140
4 1 Y 1 D THR 131 ? B THR 141
5 1 Y 1 D SER 132 ? B SER 142
6 1 Y 1 D GLY 133 ? B GLY 143
7 1 Y 1 D GLY 134 ? B GLY 144
8 1 Y 1 D LYS 214 ? B LYS 224
9 1 Y 1 D SER 215 ? B SER 225
10 1 Y 1 D CYS 216 ? B CYS 226
11 1 Y 1 D ASP 217 ? B ASP 227
12 1 Y 1 D LYS 218 ? B LYS 228
13 1 Y 1 E GLU 213 ? C GLU 214
14 1 Y 1 E CYS 214 ? C CYS 215
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
BMA C1 C N R 74
BMA C2 C N S 75
BMA C3 C N S 76
BMA C4 C N S 77
BMA C5 C N R 78
BMA C6 C N N 79
BMA O1 O N N 80
BMA O2 O N N 81
BMA O3 O N N 82
BMA O4 O N N 83
BMA O5 O N N 84
BMA O6 O N N 85
BMA H1 H N N 86
BMA H2 H N N 87
BMA H3 H N N 88
BMA H4 H N N 89
BMA H5 H N N 90
BMA H61 H N N 91
BMA H62 H N N 92
BMA HO1 H N N 93
BMA HO2 H N N 94
BMA HO3 H N N 95
BMA HO4 H N N 96
BMA HO6 H N N 97
CYS N N N N 98
CYS CA C N R 99
CYS C C N N 100
CYS O O N N 101
CYS CB C N N 102
CYS SG S N N 103
CYS OXT O N N 104
CYS H H N N 105
CYS H2 H N N 106
CYS HA H N N 107
CYS HB2 H N N 108
CYS HB3 H N N 109
CYS HG H N N 110
CYS HXT H N N 111
GLN N N N N 112
GLN CA C N S 113
GLN C C N N 114
GLN O O N N 115
GLN CB C N N 116
GLN CG C N N 117
GLN CD C N N 118
GLN OE1 O N N 119
GLN NE2 N N N 120
GLN OXT O N N 121
GLN H H N N 122
GLN H2 H N N 123
GLN HA H N N 124
GLN HB2 H N N 125
GLN HB3 H N N 126
GLN HG2 H N N 127
GLN HG3 H N N 128
GLN HE21 H N N 129
GLN HE22 H N N 130
GLN HXT H N N 131
GLU N N N N 132
GLU CA C N S 133
GLU C C N N 134
GLU O O N N 135
GLU CB C N N 136
GLU CG C N N 137
GLU CD C N N 138
GLU OE1 O N N 139
GLU OE2 O N N 140
GLU OXT O N N 141
GLU H H N N 142
GLU H2 H N N 143
GLU HA H N N 144
GLU HB2 H N N 145
GLU HB3 H N N 146
GLU HG2 H N N 147
GLU HG3 H N N 148
GLU HE2 H N N 149
GLU HXT H N N 150
GLY N N N N 151
GLY CA C N N 152
GLY C C N N 153
GLY O O N N 154
GLY OXT O N N 155
GLY H H N N 156
GLY H2 H N N 157
GLY HA2 H N N 158
GLY HA3 H N N 159
GLY HXT H N N 160
HIS N N N N 161
HIS CA C N S 162
HIS C C N N 163
HIS O O N N 164
HIS CB C N N 165
HIS CG C Y N 166
HIS ND1 N Y N 167
HIS CD2 C Y N 168
HIS CE1 C Y N 169
HIS NE2 N Y N 170
HIS OXT O N N 171
HIS H H N N 172
HIS H2 H N N 173
HIS HA H N N 174
HIS HB2 H N N 175
HIS HB3 H N N 176
HIS HD1 H N N 177
HIS HD2 H N N 178
HIS HE1 H N N 179
HIS HE2 H N N 180
HIS HXT H N N 181
ILE N N N N 182
ILE CA C N S 183
ILE C C N N 184
ILE O O N N 185
ILE CB C N S 186
ILE CG1 C N N 187
ILE CG2 C N N 188
ILE CD1 C N N 189
ILE OXT O N N 190
ILE H H N N 191
ILE H2 H N N 192
ILE HA H N N 193
ILE HB H N N 194
ILE HG12 H N N 195
ILE HG13 H N N 196
ILE HG21 H N N 197
ILE HG22 H N N 198
ILE HG23 H N N 199
ILE HD11 H N N 200
ILE HD12 H N N 201
ILE HD13 H N N 202
ILE HXT H N N 203
LEU N N N N 204
LEU CA C N S 205
LEU C C N N 206
LEU O O N N 207
LEU CB C N N 208
LEU CG C N N 209
LEU CD1 C N N 210
LEU CD2 C N N 211
LEU OXT O N N 212
LEU H H N N 213
LEU H2 H N N 214
LEU HA H N N 215
LEU HB2 H N N 216
LEU HB3 H N N 217
LEU HG H N N 218
LEU HD11 H N N 219
LEU HD12 H N N 220
LEU HD13 H N N 221
LEU HD21 H N N 222
LEU HD22 H N N 223
LEU HD23 H N N 224
LEU HXT H N N 225
LYS N N N N 226
LYS CA C N S 227
LYS C C N N 228
LYS O O N N 229
LYS CB C N N 230
LYS CG C N N 231
LYS CD C N N 232
LYS CE C N N 233
LYS NZ N N N 234
LYS OXT O N N 235
LYS H H N N 236
LYS H2 H N N 237
LYS HA H N N 238
LYS HB2 H N N 239
LYS HB3 H N N 240
LYS HG2 H N N 241
LYS HG3 H N N 242
LYS HD2 H N N 243
LYS HD3 H N N 244
LYS HE2 H N N 245
LYS HE3 H N N 246
LYS HZ1 H N N 247
LYS HZ2 H N N 248
LYS HZ3 H N N 249
LYS HXT H N N 250
MAN C1 C N S 251
MAN C2 C N S 252
MAN C3 C N S 253
MAN C4 C N S 254
MAN C5 C N R 255
MAN C6 C N N 256
MAN O1 O N N 257
MAN O2 O N N 258
MAN O3 O N N 259
MAN O4 O N N 260
MAN O5 O N N 261
MAN O6 O N N 262
MAN H1 H N N 263
MAN H2 H N N 264
MAN H3 H N N 265
MAN H4 H N N 266
MAN H5 H N N 267
MAN H61 H N N 268
MAN H62 H N N 269
MAN HO1 H N N 270
MAN HO2 H N N 271
MAN HO3 H N N 272
MAN HO4 H N N 273
MAN HO6 H N N 274
MET N N N N 275
MET CA C N S 276
MET C C N N 277
MET O O N N 278
MET CB C N N 279
MET CG C N N 280
MET SD S N N 281
MET CE C N N 282
MET OXT O N N 283
MET H H N N 284
MET H2 H N N 285
MET HA H N N 286
MET HB2 H N N 287
MET HB3 H N N 288
MET HG2 H N N 289
MET HG3 H N N 290
MET HE1 H N N 291
MET HE2 H N N 292
MET HE3 H N N 293
MET HXT H N N 294
NAG C1 C N R 295
NAG C2 C N R 296
NAG C3 C N R 297
NAG C4 C N S 298
NAG C5 C N R 299
NAG C6 C N N 300
NAG C7 C N N 301
NAG C8 C N N 302
NAG N2 N N N 303
NAG O1 O N N 304
NAG O3 O N N 305
NAG O4 O N N 306
NAG O5 O N N 307
NAG O6 O N N 308
NAG O7 O N N 309
NAG H1 H N N 310
NAG H2 H N N 311
NAG H3 H N N 312
NAG H4 H N N 313
NAG H5 H N N 314
NAG H61 H N N 315
NAG H62 H N N 316
NAG H81 H N N 317
NAG H82 H N N 318
NAG H83 H N N 319
NAG HN2 H N N 320
NAG HO1 H N N 321
NAG HO3 H N N 322
NAG HO4 H N N 323
NAG HO6 H N N 324
PHE N N N N 325
PHE CA C N S 326
PHE C C N N 327
PHE O O N N 328
PHE CB C N N 329
PHE CG C Y N 330
PHE CD1 C Y N 331
PHE CD2 C Y N 332
PHE CE1 C Y N 333
PHE CE2 C Y N 334
PHE CZ C Y N 335
PHE OXT O N N 336
PHE H H N N 337
PHE H2 H N N 338
PHE HA H N N 339
PHE HB2 H N N 340
PHE HB3 H N N 341
PHE HD1 H N N 342
PHE HD2 H N N 343
PHE HE1 H N N 344
PHE HE2 H N N 345
PHE HZ H N N 346
PHE HXT H N N 347
PRO N N N N 348
PRO CA C N S 349
PRO C C N N 350
PRO O O N N 351
PRO CB C N N 352
PRO CG C N N 353
PRO CD C N N 354
PRO OXT O N N 355
PRO H H N N 356
PRO HA H N N 357
PRO HB2 H N N 358
PRO HB3 H N N 359
PRO HG2 H N N 360
PRO HG3 H N N 361
PRO HD2 H N N 362
PRO HD3 H N N 363
PRO HXT H N N 364
SER N N N N 365
SER CA C N S 366
SER C C N N 367
SER O O N N 368
SER CB C N N 369
SER OG O N N 370
SER OXT O N N 371
SER H H N N 372
SER H2 H N N 373
SER HA H N N 374
SER HB2 H N N 375
SER HB3 H N N 376
SER HG H N N 377
SER HXT H N N 378
THR N N N N 379
THR CA C N S 380
THR C C N N 381
THR O O N N 382
THR CB C N R 383
THR OG1 O N N 384
THR CG2 C N N 385
THR OXT O N N 386
THR H H N N 387
THR H2 H N N 388
THR HA H N N 389
THR HB H N N 390
THR HG1 H N N 391
THR HG21 H N N 392
THR HG22 H N N 393
THR HG23 H N N 394
THR HXT H N N 395
TRP N N N N 396
TRP CA C N S 397
TRP C C N N 398
TRP O O N N 399
TRP CB C N N 400
TRP CG C Y N 401
TRP CD1 C Y N 402
TRP CD2 C Y N 403
TRP NE1 N Y N 404
TRP CE2 C Y N 405
TRP CE3 C Y N 406
TRP CZ2 C Y N 407
TRP CZ3 C Y N 408
TRP CH2 C Y N 409
TRP OXT O N N 410
TRP H H N N 411
TRP H2 H N N 412
TRP HA H N N 413
TRP HB2 H N N 414
TRP HB3 H N N 415
TRP HD1 H N N 416
TRP HE1 H N N 417
TRP HE3 H N N 418
TRP HZ2 H N N 419
TRP HZ3 H N N 420
TRP HH2 H N N 421
TRP HXT H N N 422
TYR N N N N 423
TYR CA C N S 424
TYR C C N N 425
TYR O O N N 426
TYR CB C N N 427
TYR CG C Y N 428
TYR CD1 C Y N 429
TYR CD2 C Y N 430
TYR CE1 C Y N 431
TYR CE2 C Y N 432
TYR CZ C Y N 433
TYR OH O N N 434
TYR OXT O N N 435
TYR H H N N 436
TYR H2 H N N 437
TYR HA H N N 438
TYR HB2 H N N 439
TYR HB3 H N N 440
TYR HD1 H N N 441
TYR HD2 H N N 442
TYR HE1 H N N 443
TYR HE2 H N N 444
TYR HH H N N 445
TYR HXT H N N 446
VAL N N N N 447
VAL CA C N S 448
VAL C C N N 449
VAL O O N N 450
VAL CB C N N 451
VAL CG1 C N N 452
VAL CG2 C N N 453
VAL OXT O N N 454
VAL H H N N 455
VAL H2 H N N 456
VAL HA H N N 457
VAL HB H N N 458
VAL HG11 H N N 459
VAL HG12 H N N 460
VAL HG13 H N N 461
VAL HG21 H N N 462
VAL HG22 H N N 463
VAL HG23 H N N 464
VAL HXT H N N 465
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
BMA C1 C2 sing N N 70
BMA C1 O1 sing N N 71
BMA C1 O5 sing N N 72
BMA C1 H1 sing N N 73
BMA C2 C3 sing N N 74
BMA C2 O2 sing N N 75
BMA C2 H2 sing N N 76
BMA C3 C4 sing N N 77
BMA C3 O3 sing N N 78
BMA C3 H3 sing N N 79
BMA C4 C5 sing N N 80
BMA C4 O4 sing N N 81
BMA C4 H4 sing N N 82
BMA C5 C6 sing N N 83
BMA C5 O5 sing N N 84
BMA C5 H5 sing N N 85
BMA C6 O6 sing N N 86
BMA C6 H61 sing N N 87
BMA C6 H62 sing N N 88
BMA O1 HO1 sing N N 89
BMA O2 HO2 sing N N 90
BMA O3 HO3 sing N N 91
BMA O4 HO4 sing N N 92
BMA O6 HO6 sing N N 93
CYS N CA sing N N 94
CYS N H sing N N 95
CYS N H2 sing N N 96
CYS CA C sing N N 97
CYS CA CB sing N N 98
CYS CA HA sing N N 99
CYS C O doub N N 100
CYS C OXT sing N N 101
CYS CB SG sing N N 102
CYS CB HB2 sing N N 103
CYS CB HB3 sing N N 104
CYS SG HG sing N N 105
CYS OXT HXT sing N N 106
GLN N CA sing N N 107
GLN N H sing N N 108
GLN N H2 sing N N 109
GLN CA C sing N N 110
GLN CA CB sing N N 111
GLN CA HA sing N N 112
GLN C O doub N N 113
GLN C OXT sing N N 114
GLN CB CG sing N N 115
GLN CB HB2 sing N N 116
GLN CB HB3 sing N N 117
GLN CG CD sing N N 118
GLN CG HG2 sing N N 119
GLN CG HG3 sing N N 120
GLN CD OE1 doub N N 121
GLN CD NE2 sing N N 122
GLN NE2 HE21 sing N N 123
GLN NE2 HE22 sing N N 124
GLN OXT HXT sing N N 125
GLU N CA sing N N 126
GLU N H sing N N 127
GLU N H2 sing N N 128
GLU CA C sing N N 129
GLU CA CB sing N N 130
GLU CA HA sing N N 131
GLU C O doub N N 132
GLU C OXT sing N N 133
GLU CB CG sing N N 134
GLU CB HB2 sing N N 135
GLU CB HB3 sing N N 136
GLU CG CD sing N N 137
GLU CG HG2 sing N N 138
GLU CG HG3 sing N N 139
GLU CD OE1 doub N N 140
GLU CD OE2 sing N N 141
GLU OE2 HE2 sing N N 142
GLU OXT HXT sing N N 143
GLY N CA sing N N 144
GLY N H sing N N 145
GLY N H2 sing N N 146
GLY CA C sing N N 147
GLY CA HA2 sing N N 148
GLY CA HA3 sing N N 149
GLY C O doub N N 150
GLY C OXT sing N N 151
GLY OXT HXT sing N N 152
HIS N CA sing N N 153
HIS N H sing N N 154
HIS N H2 sing N N 155
HIS CA C sing N N 156
HIS CA CB sing N N 157
HIS CA HA sing N N 158
HIS C O doub N N 159
HIS C OXT sing N N 160
HIS CB CG sing N N 161
HIS CB HB2 sing N N 162
HIS CB HB3 sing N N 163
HIS CG ND1 sing Y N 164
HIS CG CD2 doub Y N 165
HIS ND1 CE1 doub Y N 166
HIS ND1 HD1 sing N N 167
HIS CD2 NE2 sing Y N 168
HIS CD2 HD2 sing N N 169
HIS CE1 NE2 sing Y N 170
HIS CE1 HE1 sing N N 171
HIS NE2 HE2 sing N N 172
HIS OXT HXT sing N N 173
ILE N CA sing N N 174
ILE N H sing N N 175
ILE N H2 sing N N 176
ILE CA C sing N N 177
ILE CA CB sing N N 178
ILE CA HA sing N N 179
ILE C O doub N N 180
ILE C OXT sing N N 181
ILE CB CG1 sing N N 182
ILE CB CG2 sing N N 183
ILE CB HB sing N N 184
ILE CG1 CD1 sing N N 185
ILE CG1 HG12 sing N N 186
ILE CG1 HG13 sing N N 187
ILE CG2 HG21 sing N N 188
ILE CG2 HG22 sing N N 189
ILE CG2 HG23 sing N N 190
ILE CD1 HD11 sing N N 191
ILE CD1 HD12 sing N N 192
ILE CD1 HD13 sing N N 193
ILE OXT HXT sing N N 194
LEU N CA sing N N 195
LEU N H sing N N 196
LEU N H2 sing N N 197
LEU CA C sing N N 198
LEU CA CB sing N N 199
LEU CA HA sing N N 200
LEU C O doub N N 201
LEU C OXT sing N N 202
LEU CB CG sing N N 203
LEU CB HB2 sing N N 204
LEU CB HB3 sing N N 205
LEU CG CD1 sing N N 206
LEU CG CD2 sing N N 207
LEU CG HG sing N N 208
LEU CD1 HD11 sing N N 209
LEU CD1 HD12 sing N N 210
LEU CD1 HD13 sing N N 211
LEU CD2 HD21 sing N N 212
LEU CD2 HD22 sing N N 213
LEU CD2 HD23 sing N N 214
LEU OXT HXT sing N N 215
LYS N CA sing N N 216
LYS N H sing N N 217
LYS N H2 sing N N 218
LYS CA C sing N N 219
LYS CA CB sing N N 220
LYS CA HA sing N N 221
LYS C O doub N N 222
LYS C OXT sing N N 223
LYS CB CG sing N N 224
LYS CB HB2 sing N N 225
LYS CB HB3 sing N N 226
LYS CG CD sing N N 227
LYS CG HG2 sing N N 228
LYS CG HG3 sing N N 229
LYS CD CE sing N N 230
LYS CD HD2 sing N N 231
LYS CD HD3 sing N N 232
LYS CE NZ sing N N 233
LYS CE HE2 sing N N 234
LYS CE HE3 sing N N 235
LYS NZ HZ1 sing N N 236
LYS NZ HZ2 sing N N 237
LYS NZ HZ3 sing N N 238
LYS OXT HXT sing N N 239
MAN C1 C2 sing N N 240
MAN C1 O1 sing N N 241
MAN C1 O5 sing N N 242
MAN C1 H1 sing N N 243
MAN C2 C3 sing N N 244
MAN C2 O2 sing N N 245
MAN C2 H2 sing N N 246
MAN C3 C4 sing N N 247
MAN C3 O3 sing N N 248
MAN C3 H3 sing N N 249
MAN C4 C5 sing N N 250
MAN C4 O4 sing N N 251
MAN C4 H4 sing N N 252
MAN C5 C6 sing N N 253
MAN C5 O5 sing N N 254
MAN C5 H5 sing N N 255
MAN C6 O6 sing N N 256
MAN C6 H61 sing N N 257
MAN C6 H62 sing N N 258
MAN O1 HO1 sing N N 259
MAN O2 HO2 sing N N 260
MAN O3 HO3 sing N N 261
MAN O4 HO4 sing N N 262
MAN O6 HO6 sing N N 263
MET N CA sing N N 264
MET N H sing N N 265
MET N H2 sing N N 266
MET CA C sing N N 267
MET CA CB sing N N 268
MET CA HA sing N N 269
MET C O doub N N 270
MET C OXT sing N N 271
MET CB CG sing N N 272
MET CB HB2 sing N N 273
MET CB HB3 sing N N 274
MET CG SD sing N N 275
MET CG HG2 sing N N 276
MET CG HG3 sing N N 277
MET SD CE sing N N 278
MET CE HE1 sing N N 279
MET CE HE2 sing N N 280
MET CE HE3 sing N N 281
MET OXT HXT sing N N 282
NAG C1 C2 sing N N 283
NAG C1 O1 sing N N 284
NAG C1 O5 sing N N 285
NAG C1 H1 sing N N 286
NAG C2 C3 sing N N 287
NAG C2 N2 sing N N 288
NAG C2 H2 sing N N 289
NAG C3 C4 sing N N 290
NAG C3 O3 sing N N 291
NAG C3 H3 sing N N 292
NAG C4 C5 sing N N 293
NAG C4 O4 sing N N 294
NAG C4 H4 sing N N 295
NAG C5 C6 sing N N 296
NAG C5 O5 sing N N 297
NAG C5 H5 sing N N 298
NAG C6 O6 sing N N 299
NAG C6 H61 sing N N 300
NAG C6 H62 sing N N 301
NAG C7 C8 sing N N 302
NAG C7 N2 sing N N 303
NAG C7 O7 doub N N 304
NAG C8 H81 sing N N 305
NAG C8 H82 sing N N 306
NAG C8 H83 sing N N 307
NAG N2 HN2 sing N N 308
NAG O1 HO1 sing N N 309
NAG O3 HO3 sing N N 310
NAG O4 HO4 sing N N 311
NAG O6 HO6 sing N N 312
PHE N CA sing N N 313
PHE N H sing N N 314
PHE N H2 sing N N 315
PHE CA C sing N N 316
PHE CA CB sing N N 317
PHE CA HA sing N N 318
PHE C O doub N N 319
PHE C OXT sing N N 320
PHE CB CG sing N N 321
PHE CB HB2 sing N N 322
PHE CB HB3 sing N N 323
PHE CG CD1 doub Y N 324
PHE CG CD2 sing Y N 325
PHE CD1 CE1 sing Y N 326
PHE CD1 HD1 sing N N 327
PHE CD2 CE2 doub Y N 328
PHE CD2 HD2 sing N N 329
PHE CE1 CZ doub Y N 330
PHE CE1 HE1 sing N N 331
PHE CE2 CZ sing Y N 332
PHE CE2 HE2 sing N N 333
PHE CZ HZ sing N N 334
PHE OXT HXT sing N N 335
PRO N CA sing N N 336
PRO N CD sing N N 337
PRO N H sing N N 338
PRO CA C sing N N 339
PRO CA CB sing N N 340
PRO CA HA sing N N 341
PRO C O doub N N 342
PRO C OXT sing N N 343
PRO CB CG sing N N 344
PRO CB HB2 sing N N 345
PRO CB HB3 sing N N 346
PRO CG CD sing N N 347
PRO CG HG2 sing N N 348
PRO CG HG3 sing N N 349
PRO CD HD2 sing N N 350
PRO CD HD3 sing N N 351
PRO OXT HXT sing N N 352
SER N CA sing N N 353
SER N H sing N N 354
SER N H2 sing N N 355
SER CA C sing N N 356
SER CA CB sing N N 357
SER CA HA sing N N 358
SER C O doub N N 359
SER C OXT sing N N 360
SER CB OG sing N N 361
SER CB HB2 sing N N 362
SER CB HB3 sing N N 363
SER OG HG sing N N 364
SER OXT HXT sing N N 365
THR N CA sing N N 366
THR N H sing N N 367
THR N H2 sing N N 368
THR CA C sing N N 369
THR CA CB sing N N 370
THR CA HA sing N N 371
THR C O doub N N 372
THR C OXT sing N N 373
THR CB OG1 sing N N 374
THR CB CG2 sing N N 375
THR CB HB sing N N 376
THR OG1 HG1 sing N N 377
THR CG2 HG21 sing N N 378
THR CG2 HG22 sing N N 379
THR CG2 HG23 sing N N 380
THR OXT HXT sing N N 381
TRP N CA sing N N 382
TRP N H sing N N 383
TRP N H2 sing N N 384
TRP CA C sing N N 385
TRP CA CB sing N N 386
TRP CA HA sing N N 387
TRP C O doub N N 388
TRP C OXT sing N N 389
TRP CB CG sing N N 390
TRP CB HB2 sing N N 391
TRP CB HB3 sing N N 392
TRP CG CD1 doub Y N 393
TRP CG CD2 sing Y N 394
TRP CD1 NE1 sing Y N 395
TRP CD1 HD1 sing N N 396
TRP CD2 CE2 doub Y N 397
TRP CD2 CE3 sing Y N 398
TRP NE1 CE2 sing Y N 399
TRP NE1 HE1 sing N N 400
TRP CE2 CZ2 sing Y N 401
TRP CE3 CZ3 doub Y N 402
TRP CE3 HE3 sing N N 403
TRP CZ2 CH2 doub Y N 404
TRP CZ2 HZ2 sing N N 405
TRP CZ3 CH2 sing Y N 406
TRP CZ3 HZ3 sing N N 407
TRP CH2 HH2 sing N N 408
TRP OXT HXT sing N N 409
TYR N CA sing N N 410
TYR N H sing N N 411
TYR N H2 sing N N 412
TYR CA C sing N N 413
TYR CA CB sing N N 414
TYR CA HA sing N N 415
TYR C O doub N N 416
TYR C OXT sing N N 417
TYR CB CG sing N N 418
TYR CB HB2 sing N N 419
TYR CB HB3 sing N N 420
TYR CG CD1 doub Y N 421
TYR CG CD2 sing Y N 422
TYR CD1 CE1 sing Y N 423
TYR CD1 HD1 sing N N 424
TYR CD2 CE2 doub Y N 425
TYR CD2 HD2 sing N N 426
TYR CE1 CZ doub Y N 427
TYR CE1 HE1 sing N N 428
TYR CE2 CZ sing Y N 429
TYR CE2 HE2 sing N N 430
TYR CZ OH sing N N 431
TYR OH HH sing N N 432
TYR OXT HXT sing N N 433
VAL N CA sing N N 434
VAL N H sing N N 435
VAL N H2 sing N N 436
VAL CA C sing N N 437
VAL CA CB sing N N 438
VAL CA HA sing N N 439
VAL C O doub N N 440
VAL C OXT sing N N 441
VAL CB CG1 sing N N 442
VAL CB CG2 sing N N 443
VAL CB HB sing N N 444
VAL CG1 HG11 sing N N 445
VAL CG1 HG12 sing N N 446
VAL CG1 HG13 sing N N 447
VAL CG2 HG21 sing N N 448
VAL CG2 HG22 sing N N 449
VAL CG2 HG23 sing N N 450
VAL OXT HXT sing N N 451
#
_em_admin.entry_id 7LRS
_em_admin.current_status REL
_em_admin.deposition_date 2021-02-17
_em_admin.deposition_site RCSB
_em_admin.last_update 2024-11-13
_em_admin.map_release_date 2021-07-14
_em_admin.title
'Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain'
#
_em_ctf_correction.id 1
_em_ctf_correction.em_image_processing_id 1
_em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION'
_em_ctf_correction.details ?
#
_em_entity_assembly_molwt.entity_assembly_id 1
_em_entity_assembly_molwt.id 1
_em_entity_assembly_molwt.experimental_flag NO
_em_entity_assembly_molwt.units MEGADALTONS
_em_entity_assembly_molwt.value 0.539951
#
_em_entity_assembly_naturalsource.id 1
_em_entity_assembly_naturalsource.entity_assembly_id 1
_em_entity_assembly_naturalsource.cell ?
_em_entity_assembly_naturalsource.cellular_location ?
_em_entity_assembly_naturalsource.ncbi_tax_id 2697049
_em_entity_assembly_naturalsource.organ ?
_em_entity_assembly_naturalsource.organelle ?
_em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2'
_em_entity_assembly_naturalsource.strain ?
_em_entity_assembly_naturalsource.tissue ?
#
_em_entity_assembly_recombinant.id 1
_em_entity_assembly_recombinant.entity_assembly_id 1
_em_entity_assembly_recombinant.cell ?
_em_entity_assembly_recombinant.ncbi_tax_id 9606
_em_entity_assembly_recombinant.organism 'Homo sapiens'
_em_entity_assembly_recombinant.plasmid ?
_em_entity_assembly_recombinant.strain ?
#
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
_em_image_processing.details
'Local refinement of the SARS-CoV-2 RBD region in complex with the antibody A789-58.1 Fab'
#
_em_image_recording.id 1
_em_image_recording.imaging_id 1
_em_image_recording.avg_electron_dose_per_image 40
_em_image_recording.average_exposure_time ?
_em_image_recording.details ?
_em_image_recording.detector_mode ?
_em_image_recording.film_or_detector_model OTHER
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
_em_particle_selection.id 1
_em_particle_selection.image_processing_id 1
_em_particle_selection.details 'Particle subtraction from the spike-Fab complex'
_em_particle_selection.method ?
_em_particle_selection.num_particles_selected 123016
_em_particle_selection.reference_model ?
#
loop_
_em_software.id
_em_software.category
_em_software.details
_em_software.name
_em_software.version
_em_software.image_processing_id
_em_software.fitting_id
_em_software.imaging_id
1 'SYMMETRY DETERMINATION' ? ? ? 1 1 1
2 'IMAGE ACQUISITION' ? ? ? ? ? 1
3 MASKING ? ? ? ? ? ?
4 'CTF CORRECTION' ? cryoSPARC 2.15 1 ? ?
5 'LAYERLINE INDEXING' ? ? ? ? ? ?
6 'DIFFRACTION INDEXING' ? ? ? ? ? ?
7 'MODEL FITTING' ? Coot 0.93 ? 1 ?
8 OTHER ? ? ? ? ? ?
9 'MODEL REFINEMENT' ? PHENIX 1.19 ? 1 ?
10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ?
11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ?
12 CLASSIFICATION ? cryoSPARC 2.15 1 ? ?
13 RECONSTRUCTION ? ? ? 1 ? ?
#
_em_specimen.id 1
_em_specimen.experiment_id 1
_em_specimen.concentration 0.5
_em_specimen.details 'Complex at 0.5 mg/mL concentration in the presence of 0.005% DDM'
_em_specimen.embedding_applied NO
_em_specimen.shadowing_applied NO
_em_specimen.staining_applied NO
_em_specimen.vitrification_applied YES
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
4 NAG 1 n
4 NAG 2 n
4 BMA 3 n
4 MAN 4 n
4 MAN 5 n
5 NAG 1 n
5 NAG 2 n
5 BMA 3 n
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 7KMS
#
_atom_sites.entry_id 7LRS
_atom_sites.Cartn_transf_matrix[1][1] ?
_atom_sites.Cartn_transf_matrix[1][2] ?
_atom_sites.Cartn_transf_matrix[1][3] ?
_atom_sites.Cartn_transf_matrix[2][1] ?
_atom_sites.Cartn_transf_matrix[2][2] ?
_atom_sites.Cartn_transf_matrix[2][3] ?
_atom_sites.Cartn_transf_matrix[3][1] ?
_atom_sites.Cartn_transf_matrix[3][2] ?
_atom_sites.Cartn_transf_matrix[3][3] ?
_atom_sites.Cartn_transf_vector[1] ?
_atom_sites.Cartn_transf_vector[2] ?
_atom_sites.Cartn_transf_vector[3] ?
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
_atom_sites.solution_primary ?
_atom_sites.solution_secondary ?
_atom_sites.solution_hydrogens ?
_atom_sites.special_details ?
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_