HEADER IMMUNE SYSTEM/VIRAL PROTEIN 18-FEB-21 7LSF TITLE CRYSTAL STRUCTURE OF THE HUMAN NEUTRALIZING ANTIBODY FAB FRAGMENT T025 TITLE 2 BOUND TO TBEV EDIII (WESTERN SUBTYPE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: T025 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: T025 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ENVELOPE PROTEIN E; COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: TICK-BORNE ENCEPHALITIS VIRUS (WESTERN SOURCE 15 SUBTYPE); SOURCE 16 ORGANISM_TAXID: 11088; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 18 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TICK-BORNE ENCEPHALITIS VIRUS, ANTIBODY, EDIII, TBEV, IMMUNE SYSTEM, KEYWDS 2 IMMUNE SYSTEM-VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.KEEFFE,P.J.BJORKMAN REVDAT 3 18-OCT-23 7LSF 1 REMARK REVDAT 2 21-APR-21 7LSF 1 JRNL REVDAT 1 07-APR-21 7LSF 0 JRNL AUTH M.AGUDELO,M.PALUS,J.R.KEEFFE,F.BIANCHINI,P.SVOBODA,J.SALAT, JRNL AUTH 2 A.PEACE,A.GAZUMYAN,M.CIPOLLA,T.KAPOOR,F.GUIDETTI,K.H.YAO, JRNL AUTH 3 J.ELSTEROVA,D.TEISLEROVA,A.CHRDLE,V.HONIG,T.OLIVEIRA, JRNL AUTH 4 A.P.WEST,Y.E.LEE,C.M.RICE,M.R.MACDONALD,P.J.BJORKMAN, JRNL AUTH 5 D.RUZEK,D.F.ROBBIANI,M.C.NUSSENZWEIG JRNL TITL BROAD AND POTENT NEUTRALIZING HUMAN ANTIBODIES TO TICK-BORNE JRNL TITL 2 FLAVIVIRUSES PROTECT MICE FROM DISEASE. JRNL REF J.EXP.MED. V. 218 2021 JRNL REFN ESSN 1540-9538 JRNL PMID 33831141 JRNL DOI 10.1084/JEM.20210236 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 30999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 1539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 90.9100 - 4.9900 0.95 2733 137 0.1687 0.1658 REMARK 3 2 4.9900 - 3.9600 0.97 2678 131 0.1411 0.1672 REMARK 3 3 3.9600 - 3.4600 0.98 2698 159 0.1691 0.2120 REMARK 3 4 3.4600 - 3.1400 0.98 2705 135 0.1893 0.2411 REMARK 3 5 3.1400 - 2.9200 0.95 2609 159 0.2115 0.2681 REMARK 3 6 2.9200 - 2.7500 0.97 2716 127 0.2156 0.2638 REMARK 3 7 2.7500 - 2.6100 0.98 2688 143 0.2254 0.2664 REMARK 3 8 2.6100 - 2.5000 0.94 2616 117 0.2393 0.3211 REMARK 3 9 2.5000 - 2.4000 0.97 2627 147 0.2573 0.3076 REMARK 3 10 2.4000 - 2.3200 0.98 2677 145 0.2465 0.3122 REMARK 3 11 2.3200 - 2.2400 0.98 2713 139 0.2379 0.2628 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.251 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.707 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4104 REMARK 3 ANGLE : 0.952 5590 REMARK 3 CHIRALITY : 0.054 625 REMARK 3 PLANARITY : 0.005 721 REMARK 3 DIHEDRAL : 17.446 1472 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3213 12.2538 44.0400 REMARK 3 T TENSOR REMARK 3 T11: 0.3138 T22: 0.1815 REMARK 3 T33: 0.3099 T12: 0.0314 REMARK 3 T13: 0.0222 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 6.8120 L22: 0.7110 REMARK 3 L33: 2.1726 L12: -0.6648 REMARK 3 L13: -2.9618 L23: -0.2349 REMARK 3 S TENSOR REMARK 3 S11: 0.2199 S12: -0.0508 S13: 0.5021 REMARK 3 S21: -0.1247 S22: -0.0039 S23: -0.0411 REMARK 3 S31: -0.3457 S32: -0.1722 S33: -0.2581 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 34 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3409 5.2600 46.6893 REMARK 3 T TENSOR REMARK 3 T11: 0.2060 T22: 0.1893 REMARK 3 T33: 0.2886 T12: 0.0091 REMARK 3 T13: 0.0099 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 3.4456 L22: 1.4254 REMARK 3 L33: 3.0716 L12: 0.4812 REMARK 3 L13: -2.1236 L23: 0.5344 REMARK 3 S TENSOR REMARK 3 S11: -0.0852 S12: -0.0998 S13: -0.0212 REMARK 3 S21: -0.0273 S22: 0.0577 S23: -0.2523 REMARK 3 S31: -0.0505 S32: 0.1284 S33: 0.0442 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 119 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8480 1.4434 12.9264 REMARK 3 T TENSOR REMARK 3 T11: 0.2952 T22: 0.5128 REMARK 3 T33: 0.3164 T12: 0.0861 REMARK 3 T13: 0.0006 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 2.1391 L22: 2.9058 REMARK 3 L33: 3.1922 L12: 0.3079 REMARK 3 L13: -0.8299 L23: -0.3367 REMARK 3 S TENSOR REMARK 3 S11: 0.2276 S12: 0.5674 S13: 0.4613 REMARK 3 S21: -0.4494 S22: -0.0982 S23: 0.3436 REMARK 3 S31: -0.2165 S32: -0.3420 S33: -0.1764 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 196 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4470 10.1729 14.9581 REMARK 3 T TENSOR REMARK 3 T11: 0.4521 T22: 0.3605 REMARK 3 T33: 0.5536 T12: 0.0722 REMARK 3 T13: 0.0636 T23: 0.1364 REMARK 3 L TENSOR REMARK 3 L11: 5.0586 L22: 5.4025 REMARK 3 L33: 8.6477 L12: 0.4520 REMARK 3 L13: 2.1110 L23: 4.1062 REMARK 3 S TENSOR REMARK 3 S11: -0.0743 S12: 0.5028 S13: 0.9226 REMARK 3 S21: -0.8824 S22: -0.4360 S23: 0.4006 REMARK 3 S31: -1.4760 S32: 0.0815 S33: 0.4111 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9594 -16.1095 36.4947 REMARK 3 T TENSOR REMARK 3 T11: 0.2091 T22: 0.2535 REMARK 3 T33: 0.4159 T12: -0.0406 REMARK 3 T13: 0.0218 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 2.0637 L22: 1.8841 REMARK 3 L33: 8.2198 L12: -1.9115 REMARK 3 L13: 1.8756 L23: -2.4996 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: 0.0876 S13: -0.3041 REMARK 3 S21: -0.1767 S22: 0.1227 S23: -0.0033 REMARK 3 S31: -0.0501 S32: 0.0478 S33: -0.1137 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 19 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3499 -8.9162 40.1352 REMARK 3 T TENSOR REMARK 3 T11: 0.2053 T22: 0.2635 REMARK 3 T33: 0.2682 T12: 0.0001 REMARK 3 T13: -0.0062 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 3.0941 L22: 3.6425 REMARK 3 L33: 3.3134 L12: 0.6660 REMARK 3 L13: -0.2678 L23: 0.2111 REMARK 3 S TENSOR REMARK 3 S11: -0.0252 S12: 0.3390 S13: -0.1416 REMARK 3 S21: -0.3188 S22: 0.0339 S23: 0.2892 REMARK 3 S31: -0.0107 S32: -0.3202 S33: -0.0252 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 91 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3115 -11.6257 36.6348 REMARK 3 T TENSOR REMARK 3 T11: 0.3152 T22: 0.2637 REMARK 3 T33: 0.2962 T12: -0.0093 REMARK 3 T13: -0.0011 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.0735 L22: 0.4330 REMARK 3 L33: 6.2359 L12: -0.4061 REMARK 3 L13: -1.7000 L23: 2.3785 REMARK 3 S TENSOR REMARK 3 S11: -0.1093 S12: 0.3127 S13: -0.2211 REMARK 3 S21: 0.0633 S22: -0.0545 S23: 0.0028 REMARK 3 S31: 0.5528 S32: -0.2288 S33: -0.0995 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 114 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.4195 -9.3855 12.2920 REMARK 3 T TENSOR REMARK 3 T11: 0.2517 T22: 0.3689 REMARK 3 T33: 0.1921 T12: 0.0203 REMARK 3 T13: -0.0144 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 6.3513 L22: 1.9846 REMARK 3 L33: 2.8482 L12: -0.2227 REMARK 3 L13: -1.4399 L23: 0.4908 REMARK 3 S TENSOR REMARK 3 S11: 0.1142 S12: 0.6042 S13: 0.3011 REMARK 3 S21: -0.1974 S22: 0.0352 S23: 0.0314 REMARK 3 S31: -0.1128 S32: -0.0843 S33: -0.1700 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 151 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0636 -11.7849 17.7734 REMARK 3 T TENSOR REMARK 3 T11: 0.2447 T22: 0.3243 REMARK 3 T33: 0.1695 T12: -0.0197 REMARK 3 T13: -0.0026 T23: 0.0744 REMARK 3 L TENSOR REMARK 3 L11: 5.5781 L22: 2.2963 REMARK 3 L33: 2.6978 L12: -0.0273 REMARK 3 L13: -0.1657 L23: 0.8431 REMARK 3 S TENSOR REMARK 3 S11: 0.0680 S12: 0.3475 S13: 0.4825 REMARK 3 S21: -0.1581 S22: -0.0613 S23: 0.1591 REMARK 3 S31: -0.0629 S32: -0.4533 S33: -0.0161 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 175 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3036 -13.7762 9.1204 REMARK 3 T TENSOR REMARK 3 T11: 0.2739 T22: 0.5229 REMARK 3 T33: 0.2286 T12: 0.0460 REMARK 3 T13: 0.0119 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 2.8663 L22: 1.5797 REMARK 3 L33: 2.5752 L12: -1.6834 REMARK 3 L13: -0.5072 L23: 0.3657 REMARK 3 S TENSOR REMARK 3 S11: 0.1308 S12: 0.8386 S13: -0.1258 REMARK 3 S21: -0.3064 S22: -0.1337 S23: -0.0016 REMARK 3 S31: -0.0059 S32: 0.0796 S33: -0.0039 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 303 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5836 0.0720 71.0927 REMARK 3 T TENSOR REMARK 3 T11: 0.4138 T22: 0.3950 REMARK 3 T33: 0.2601 T12: -0.1493 REMARK 3 T13: 0.0300 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 2.0346 L22: 1.9350 REMARK 3 L33: 6.3245 L12: -1.0283 REMARK 3 L13: -1.7273 L23: 0.1106 REMARK 3 S TENSOR REMARK 3 S11: 0.2157 S12: -0.4225 S13: -0.1165 REMARK 3 S21: 0.4000 S22: -0.1675 S23: 0.2310 REMARK 3 S31: 0.8143 S32: -0.2190 S33: 0.0113 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 326 THROUGH 361 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9807 5.2180 71.7300 REMARK 3 T TENSOR REMARK 3 T11: 0.2384 T22: 0.3489 REMARK 3 T33: 0.2446 T12: -0.0168 REMARK 3 T13: 0.0084 T23: 0.0663 REMARK 3 L TENSOR REMARK 3 L11: 0.9473 L22: 4.5678 REMARK 3 L33: 4.9208 L12: 0.5870 REMARK 3 L13: -0.7103 L23: 3.6114 REMARK 3 S TENSOR REMARK 3 S11: 0.1008 S12: -0.1578 S13: 0.0522 REMARK 3 S21: 0.5869 S22: -0.1015 S23: 0.1892 REMARK 3 S31: 0.4926 S32: -0.1471 S33: -0.0163 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 362 THROUGH 396 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6264 4.3508 74.8969 REMARK 3 T TENSOR REMARK 3 T11: 0.3156 T22: 0.4525 REMARK 3 T33: 0.2404 T12: -0.0791 REMARK 3 T13: 0.0728 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 4.6072 L22: 2.6114 REMARK 3 L33: 4.6443 L12: -0.5101 REMARK 3 L13: -1.5726 L23: 1.6719 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: -0.2109 S13: -0.0608 REMARK 3 S21: 0.5219 S22: -0.3561 S23: 0.1678 REMARK 3 S31: 0.6167 S32: -0.7679 S33: 0.3155 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LSF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000253019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31036 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 90.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GHW, 4OGX, 6J5F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE TRIBASIC DIHYDRATE REMARK 280 PH 5.0, 10% PEG 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.36500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 CYS L 214 REMARK 465 MET E 299 REMARK 465 LYS E 300 REMARK 465 GLY E 301 REMARK 465 LEU E 302 REMARK 465 SER E 397 REMARK 465 HIS E 398 REMARK 465 HIS E 399 REMARK 465 HIS E 400 REMARK 465 HIS E 401 REMARK 465 HIS E 402 REMARK 465 HIS E 403 REMARK 465 GLY E 404 REMARK 465 LEU E 405 REMARK 465 ASN E 406 REMARK 465 ASP E 407 REMARK 465 ILE E 408 REMARK 465 PHE E 409 REMARK 465 GLU E 410 REMARK 465 ALA E 411 REMARK 465 GLN E 412 REMARK 465 LYS E 413 REMARK 465 ILE E 414 REMARK 465 GLU E 415 REMARK 465 TRP E 416 REMARK 465 HIS E 417 REMARK 465 GLU E 418 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU H 178 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR H 97 -152.91 -133.06 REMARK 500 ILE H 99 -36.61 -155.05 REMARK 500 ASP H 144 62.42 64.59 REMARK 500 THR H 191 -37.77 -139.51 REMARK 500 SER L 30 -121.94 40.93 REMARK 500 ALA L 51 -37.49 75.00 REMARK 500 LEU L 78 121.46 -38.30 REMARK 500 ALA L 84 -170.22 -174.28 REMARK 500 ASN L 138 68.30 60.63 REMARK 500 HIS E 323 51.34 -91.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA E 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP H 100 OD1 REMARK 620 2 THR E 335 O 104.6 REMARK 620 3 HOH E 603 O 105.8 99.5 REMARK 620 N 1 2 DBREF 7LSF H 1 225 PDB 7LSF 7LSF 1 225 DBREF 7LSF L 1 214 PDB 7LSF 7LSF 1 214 DBREF 7LSF E 299 397 UNP E3UMN9 E3UMN9_9FLAV 299 397 SEQADV 7LSF HIS E 398 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF HIS E 399 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF HIS E 400 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF HIS E 401 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF HIS E 402 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF HIS E 403 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF GLY E 404 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF LEU E 405 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF ASN E 406 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF ASP E 407 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF ILE E 408 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF PHE E 409 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF GLU E 410 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF ALA E 411 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF GLN E 412 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF LYS E 413 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF ILE E 414 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF GLU E 415 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF TRP E 416 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF HIS E 417 UNP E3UMN9 EXPRESSION TAG SEQADV 7LSF GLU E 418 UNP E3UMN9 EXPRESSION TAG SEQRES 1 H 232 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 232 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 232 PHE THR PHE SER ASN TYR GLY MET HIS TRP VAL ARG GLN SEQRES 4 H 232 ALA PRO GLY LYS GLY LEU ASP TRP VAL ALA VAL ILE SER SEQRES 5 H 232 TYR ASP ALA ILE SER LYS SER TYR ALA ASP SER VAL GLU SEQRES 6 H 232 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 232 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP SER SEQRES 8 H 232 ALA VAL TYR TYR CYS ALA LYS SER PRO THR ALA ILE ASP SEQRES 9 H 232 PRO PRO PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 H 232 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 232 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 232 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 232 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 232 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 232 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 232 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 232 PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SEQRES 18 H 232 SER CYS ASP LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 L 214 GLU ILE VAL MET THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 L 214 SER PRO GLY GLU ARG ALA THR LEU SER CYS TRP ALA SER SEQRES 3 L 214 GLN SER VAL SER SER ASN LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SER SEQRES 5 L 214 THR ARG ALA THR GLY ILE PRO ALA ARG PHE SER ALA SER SEQRES 6 L 214 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN SER GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 ASN ASN TRP PRO PRO ARG PHE GLY GLN GLY THR LYS VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 E 120 MET LYS GLY LEU THR TYR THR MET CYS ASP LYS THR LYS SEQRES 2 E 120 PHE THR TRP LYS ARG ALA PRO THR ASP SER GLY HIS ASP SEQRES 3 E 120 THR VAL VAL MET GLU VAL THR PHE SER GLY THR LYS PRO SEQRES 4 E 120 CYS ARG ILE PRO VAL ARG ALA VAL ALA HIS GLY SER PRO SEQRES 5 E 120 ASP VAL ASN VAL ALA MET LEU ILE THR PRO ASN PRO THR SEQRES 6 E 120 ILE GLU ASN ASN GLY GLY GLY PHE ILE GLU MET GLN LEU SEQRES 7 E 120 PRO PRO GLY ASP ASN ILE ILE TYR VAL GLY GLU LEU SER SEQRES 8 E 120 HIS GLN TRP PHE GLN LYS GLY SER HIS HIS HIS HIS HIS SEQRES 9 E 120 HIS GLY LEU ASN ASP ILE PHE GLU ALA GLN LYS ILE GLU SEQRES 10 E 120 TRP HIS GLU HET NA H 301 1 HET GOL L 301 6 HET NA E 501 1 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NA 2(NA 1+) FORMUL 5 GOL C3 H8 O3 FORMUL 7 HOH *119(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ASP H 61 GLU H 64 5 4 HELIX 3 AA3 ARG H 83 SER H 87 5 5 HELIX 4 AA4 SER H 187 THR H 191 5 5 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 GLN L 79 PHE L 83 5 5 HELIX 7 AA7 SER L 121 SER L 127 1 7 HELIX 8 AA8 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N SER H 70 O TYR H 79 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA2 6 ALA H 88 LYS H 94 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 ASP H 46 ILE H 51 -1 O ASP H 46 N ARG H 38 SHEET 6 AA2 6 LYS H 57 TYR H 59 -1 O SER H 58 N VAL H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA3 4 ALA H 88 LYS H 94 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 TYR H 102 TRP H 103 -1 O TYR H 102 N LYS H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 ALA L 25 -1 O TRP L 24 N THR L 5 SHEET 3 AA7 4 GLU L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 THR L 10 VAL L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 AA8 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 THR L 53 ARG L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA9 4 THR L 10 VAL L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 4 ARG L 97 PHE L 98 -1 O ARG L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AB3 4 PHE E 312 ASP E 320 0 SHEET 2 AB3 4 VAL E 326 PHE E 332 -1 O GLU E 329 N ARG E 316 SHEET 3 AB3 4 PHE E 371 GLN E 375 -1 O MET E 374 N VAL E 326 SHEET 4 AB3 4 MET E 356 LEU E 357 -1 N MET E 356 O GLN E 375 SHEET 1 AB4 2 CYS E 338 ARG E 339 0 SHEET 2 AB4 2 THR E 363 ILE E 364 -1 O ILE E 364 N CYS E 338 SHEET 1 AB5 4 SER E 349 ASN E 353 0 SHEET 2 AB5 4 VAL E 342 ALA E 346 -1 N ALA E 346 O SER E 349 SHEET 3 AB5 4 GLY E 379 VAL E 385 -1 O TYR E 384 N ARG E 343 SHEET 4 AB5 4 LEU E 388 GLN E 394 -1 O HIS E 390 N ILE E 383 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.09 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.11 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 5 CYS E 307 CYS E 338 1555 1555 2.07 LINK OD1 ASP H 100 NA NA E 501 1555 1555 2.71 LINK O THR E 335 NA NA E 501 1555 1555 2.85 LINK NA NA E 501 O HOH E 603 1555 1555 2.71 CISPEP 1 PRO H 100A PRO H 100B 0 5.07 CISPEP 2 PHE H 146 PRO H 147 0 -4.89 CISPEP 3 GLU H 148 PRO H 149 0 -0.64 CISPEP 4 SER L 7 PRO L 8 0 -6.08 CISPEP 5 TRP L 94 PRO L 95 0 -2.83 CISPEP 6 TYR L 140 PRO L 141 0 -2.09 CISPEP 7 LYS E 336 PRO E 337 0 -4.45 CRYST1 55.542 66.730 91.210 90.00 94.64 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018004 0.000000 0.001461 0.00000 SCALE2 0.000000 0.014986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011000 0.00000