HEADER SIGNALING PROTEIN 18-FEB-21 7LT6 TITLE STRUCTURE OF PARTIAL BETA-HAIRPIN LIR FROM FNIP2 BOUND TO GABARAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FOLLICULIN-INTERACTING PROTEIN 2,GAMMA-AMINOBUTYRIC ACID COMPND 3 RECEPTOR-ASSOCIATED PROTEIN; COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: FNIP1-LIKE PROTEIN,O6-METHYLGUANINE-INDUCED APOPTOSIS 1 COMPND 6 PROTEIN,GABA(A) RECEPTOR-ASSOCIATED PROTEIN,MM46; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FNIP2, FNIPL, KIAA1450, MAPO1, GABARAP, FLC3B, HT004; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AUTOPHAGY, ATG8, LIR, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.A.APPLETON REVDAT 2 18-OCT-23 7LT6 1 REMARK REVDAT 1 13-OCT-21 7LT6 0 JRNL AUTH J.M.GOODWIN,W.G.WALKUP 4TH,K.HOOPER,T.LI,C.KISHI-ITAKURA, JRNL AUTH 2 A.NG,T.LEHMBERG,A.JHA,S.KOMMINENI,K.FLETCHER, JRNL AUTH 3 J.GARCIA-FORTANET,Y.FAN,Q.TANG,M.WEI,A.AGRAWAL,S.R.BUDHE, JRNL AUTH 4 S.R.ROUDURI,D.BAIRD,J.SAUNDERS,J.KISELAR,M.R.CHANCE, JRNL AUTH 5 A.BALLABIO,B.A.APPLETON,J.H.BRUMELL,O.FLOREY,L.O.MURPHY JRNL TITL GABARAP SEQUESTERS THE FLCN-FNIP TUMOR SUPPRESSOR COMPLEX TO JRNL TITL 2 COUPLE AUTOPHAGY WITH LYSOSOMAL BIOGENESIS. JRNL REF SCI ADV V. 7 J2485 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34597140 JRNL DOI 10.1126/SCIADV.ABJ2485 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 39930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 2249 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.4210 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.5120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3390 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 408 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.304 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3555 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3353 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4794 ; 1.687 ; 1.661 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7789 ; 1.382 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 417 ; 7.715 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;32.698 ;21.483 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 656 ;15.833 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;21.979 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 431 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3960 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 800 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A -16 117 B -16 117 4145 0.130 0.050 REMARK 3 2 A -20 117 C -20 117 4364 0.150 0.050 REMARK 3 3 B -20 117 C -20 117 4158 0.160 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -21 A -5 REMARK 3 ORIGIN FOR THE GROUP (A): 39.2710 -5.7702 51.3725 REMARK 3 T TENSOR REMARK 3 T11: 0.0472 T22: 0.0955 REMARK 3 T33: 0.0517 T12: 0.0522 REMARK 3 T13: -0.0282 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 7.1015 L22: 1.2972 REMARK 3 L33: 4.6002 L12: -3.0065 REMARK 3 L13: 4.9321 L23: -1.9574 REMARK 3 S TENSOR REMARK 3 S11: -0.1991 S12: -0.4114 S13: -0.0187 REMARK 3 S21: 0.0939 S22: 0.2014 S23: 0.0162 REMARK 3 S31: -0.1459 S32: -0.2713 S33: -0.0024 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5071 -6.3429 22.9946 REMARK 3 T TENSOR REMARK 3 T11: 0.0162 T22: 0.1360 REMARK 3 T33: 0.1643 T12: -0.0046 REMARK 3 T13: -0.0325 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.7396 L22: 0.8330 REMARK 3 L33: 1.2239 L12: 0.1874 REMARK 3 L13: 0.1608 L23: 0.1518 REMARK 3 S TENSOR REMARK 3 S11: -0.0828 S12: -0.0049 S13: 0.0186 REMARK 3 S21: -0.0020 S22: 0.1097 S23: 0.0653 REMARK 3 S31: 0.0037 S32: -0.1712 S33: -0.0270 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -20 B -5 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3830 -2.8762 10.9468 REMARK 3 T TENSOR REMARK 3 T11: 0.0126 T22: 0.0883 REMARK 3 T33: 0.0926 T12: 0.0074 REMARK 3 T13: -0.0143 T23: 0.0595 REMARK 3 L TENSOR REMARK 3 L11: 7.9206 L22: 1.3538 REMARK 3 L33: 1.2832 L12: 1.1957 REMARK 3 L13: -0.6867 L23: -0.8019 REMARK 3 S TENSOR REMARK 3 S11: -0.0815 S12: 0.1491 S13: -0.0254 REMARK 3 S21: 0.0166 S22: 0.1532 S23: 0.1189 REMARK 3 S31: -0.0850 S32: -0.2429 S33: -0.0717 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): 48.1573 -8.8032 9.2802 REMARK 3 T TENSOR REMARK 3 T11: 0.0134 T22: 0.0891 REMARK 3 T33: 0.1462 T12: -0.0231 REMARK 3 T13: -0.0241 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.9168 L22: 0.9007 REMARK 3 L33: 0.5865 L12: -0.4861 REMARK 3 L13: -0.2759 L23: 0.3298 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: 0.0975 S13: -0.0129 REMARK 3 S21: -0.0225 S22: 0.0392 S23: -0.0236 REMARK 3 S31: -0.0335 S32: -0.0004 S33: -0.0261 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -20 C -5 REMARK 3 ORIGIN FOR THE GROUP (A): 61.0602 -7.5382 10.9957 REMARK 3 T TENSOR REMARK 3 T11: 0.0161 T22: 0.0425 REMARK 3 T33: 0.0747 T12: -0.0205 REMARK 3 T13: -0.0138 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.6953 L22: 1.0693 REMARK 3 L33: 8.3956 L12: -1.1749 REMARK 3 L13: -2.3637 L23: 2.7574 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: 0.0262 S13: -0.0241 REMARK 3 S21: -0.0006 S22: 0.0456 S23: -0.0156 REMARK 3 S31: -0.1172 S32: 0.2370 S33: 0.0067 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -4 C 11 REMARK 3 ORIGIN FOR THE GROUP (A): 56.2941 -11.5543 43.7331 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.1668 REMARK 3 T33: 0.1536 T12: 0.0387 REMARK 3 T13: -0.0307 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.8990 L22: 3.7629 REMARK 3 L33: 5.6289 L12: -0.0759 REMARK 3 L13: 0.2841 L23: -4.2420 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 0.0645 S13: 0.0167 REMARK 3 S21: -0.1189 S22: -0.1524 S23: -0.2964 REMARK 3 S31: 0.2487 S32: 0.4870 S33: 0.1297 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7LT6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254962. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42191 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 39.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.23000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.71600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6HYO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM ACETATE, 0.1 M MOPS PH REMARK 280 7.5, AND 12% V/V PEG 8000, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.37500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY COMPRISES OF RESIDUES: REMARK 300 -20:-2 OF CHAIN A BOUND TO 1:117 OF CHAIN C, REMARK 300 -20:-2 OF CHAIN B BOUND TO 1:117 OF CHAIN A, REMARK 300 -20:-2 OF CHAIN C BOUND TO 1:117 OF CHAIN B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 GLY B -21 REMARK 465 GLY B -18 REMARK 465 GLU B -17 REMARK 465 ASN B -4 REMARK 465 GLU B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 GLY C -21 REMARK 465 GLU C -17 REMARK 465 VAL C -16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C -14 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 228 O HOH B 273 1.80 REMARK 500 O HOH A 325 O HOH C 342 1.96 REMARK 500 O HOH C 304 O HOH C 334 1.99 REMARK 500 O HOH B 322 O HOH C 274 2.05 REMARK 500 O HOH A 212 O HOH A 313 2.07 REMARK 500 O HOH B 320 O HOH B 331 2.09 REMARK 500 O HOH A 272 O HOH A 324 2.13 REMARK 500 O HOH B 333 O HOH B 334 2.13 REMARK 500 O PRO A 37 O HOH A 201 2.15 REMARK 500 O HOH A 263 O HOH A 301 2.17 REMARK 500 O HOH C 273 O HOH C 337 2.18 REMARK 500 O HOH A 320 O HOH B 308 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG C 40 OE2 GLU C 101 2756 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 12 CD GLU B 12 OE2 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A -16 -56.97 -121.20 REMARK 500 LYS A 38 0.96 81.05 REMARK 500 ASP B 111 -157.16 -83.09 REMARK 500 ASN C -4 44.68 38.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 38 ALA B 39 145.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7LSW RELATED DB: PDB DBREF 7LT6 A -20 -2 UNP Q9P278 FNIP2_HUMAN 558 576 DBREF 7LT6 A 1 117 UNP O95166 GBRAP_HUMAN 1 117 DBREF 7LT6 B -20 -2 UNP Q9P278 FNIP2_HUMAN 558 576 DBREF 7LT6 B 1 117 UNP O95166 GBRAP_HUMAN 1 117 DBREF 7LT6 C -20 -2 UNP Q9P278 FNIP2_HUMAN 558 576 DBREF 7LT6 C 1 117 UNP O95166 GBRAP_HUMAN 1 117 SEQADV 7LT6 GLY A -21 UNP Q9P278 EXPRESSION TAG SEQADV 7LT6 GLY A -1 UNP Q9P278 LINKER SEQADV 7LT6 SER A 0 UNP Q9P278 LINKER SEQADV 7LT6 GLY B -21 UNP Q9P278 EXPRESSION TAG SEQADV 7LT6 GLY B -1 UNP Q9P278 LINKER SEQADV 7LT6 SER B 0 UNP Q9P278 LINKER SEQADV 7LT6 GLY C -21 UNP Q9P278 EXPRESSION TAG SEQADV 7LT6 GLY C -1 UNP Q9P278 LINKER SEQADV 7LT6 SER C 0 UNP Q9P278 LINKER SEQRES 1 A 139 GLY GLU LYS GLY GLU VAL GLU GLU SER GLU TYR VAL VAL SEQRES 2 A 139 ILE THR VAL ARG ASN GLU PRO GLY SER MET LYS PHE VAL SEQRES 3 A 139 TYR LYS GLU GLU HIS PRO PHE GLU LYS ARG ARG SER GLU SEQRES 4 A 139 GLY GLU LYS ILE ARG LYS LYS TYR PRO ASP ARG VAL PRO SEQRES 5 A 139 VAL ILE VAL GLU LYS ALA PRO LYS ALA ARG ILE GLY ASP SEQRES 6 A 139 LEU ASP LYS LYS LYS TYR LEU VAL PRO SER ASP LEU THR SEQRES 7 A 139 VAL GLY GLN PHE TYR PHE LEU ILE ARG LYS ARG ILE HIS SEQRES 8 A 139 LEU ARG ALA GLU ASP ALA LEU PHE PHE PHE VAL ASN ASN SEQRES 9 A 139 VAL ILE PRO PRO THR SER ALA THR MET GLY GLN LEU TYR SEQRES 10 A 139 GLN GLU HIS HIS GLU GLU ASP PHE PHE LEU TYR ILE ALA SEQRES 11 A 139 TYR SER ASP GLU SER VAL TYR GLY LEU SEQRES 1 B 139 GLY GLU LYS GLY GLU VAL GLU GLU SER GLU TYR VAL VAL SEQRES 2 B 139 ILE THR VAL ARG ASN GLU PRO GLY SER MET LYS PHE VAL SEQRES 3 B 139 TYR LYS GLU GLU HIS PRO PHE GLU LYS ARG ARG SER GLU SEQRES 4 B 139 GLY GLU LYS ILE ARG LYS LYS TYR PRO ASP ARG VAL PRO SEQRES 5 B 139 VAL ILE VAL GLU LYS ALA PRO LYS ALA ARG ILE GLY ASP SEQRES 6 B 139 LEU ASP LYS LYS LYS TYR LEU VAL PRO SER ASP LEU THR SEQRES 7 B 139 VAL GLY GLN PHE TYR PHE LEU ILE ARG LYS ARG ILE HIS SEQRES 8 B 139 LEU ARG ALA GLU ASP ALA LEU PHE PHE PHE VAL ASN ASN SEQRES 9 B 139 VAL ILE PRO PRO THR SER ALA THR MET GLY GLN LEU TYR SEQRES 10 B 139 GLN GLU HIS HIS GLU GLU ASP PHE PHE LEU TYR ILE ALA SEQRES 11 B 139 TYR SER ASP GLU SER VAL TYR GLY LEU SEQRES 1 C 139 GLY GLU LYS GLY GLU VAL GLU GLU SER GLU TYR VAL VAL SEQRES 2 C 139 ILE THR VAL ARG ASN GLU PRO GLY SER MET LYS PHE VAL SEQRES 3 C 139 TYR LYS GLU GLU HIS PRO PHE GLU LYS ARG ARG SER GLU SEQRES 4 C 139 GLY GLU LYS ILE ARG LYS LYS TYR PRO ASP ARG VAL PRO SEQRES 5 C 139 VAL ILE VAL GLU LYS ALA PRO LYS ALA ARG ILE GLY ASP SEQRES 6 C 139 LEU ASP LYS LYS LYS TYR LEU VAL PRO SER ASP LEU THR SEQRES 7 C 139 VAL GLY GLN PHE TYR PHE LEU ILE ARG LYS ARG ILE HIS SEQRES 8 C 139 LEU ARG ALA GLU ASP ALA LEU PHE PHE PHE VAL ASN ASN SEQRES 9 C 139 VAL ILE PRO PRO THR SER ALA THR MET GLY GLN LEU TYR SEQRES 10 C 139 GLN GLU HIS HIS GLU GLU ASP PHE PHE LEU TYR ILE ALA SEQRES 11 C 139 TYR SER ASP GLU SER VAL TYR GLY LEU FORMUL 4 HOH *408(H2 O) HELIX 1 AA1 PHE A 3 HIS A 9 1 7 HELIX 2 AA2 PRO A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 ILE A 68 1 13 HELIX 4 AA4 THR A 90 HIS A 99 1 10 HELIX 5 AA5 PHE B 3 HIS B 9 1 7 HELIX 6 AA6 PRO B 10 TYR B 25 1 16 HELIX 7 AA7 THR B 56 ILE B 68 1 13 HELIX 8 AA8 THR B 90 HIS B 99 1 10 HELIX 9 AA9 PHE C 3 HIS C 9 1 7 HELIX 10 AB1 PRO C 10 TYR C 25 1 16 HELIX 11 AB2 THR C 56 HIS C 69 1 14 HELIX 12 AB3 THR C 90 HIS C 99 1 10 SHEET 1 AA1 6 VAL A 114 LEU A 117 0 SHEET 2 AA1 6 VAL A -10 VAL A -6 -1 N VAL A -9 O LEU A 117 SHEET 3 AA1 6 LYS C 48 PRO C 52 1 O LEU C 50 N ILE A -8 SHEET 4 AA1 6 ARG C 28 LYS C 35 -1 N VAL C 31 O TYR C 49 SHEET 5 AA1 6 LEU C 105 SER C 110 1 O ILE C 107 N ILE C 32 SHEET 6 AA1 6 PHE C 77 PHE C 79 -1 N PHE C 79 O ALA C 108 SHEET 1 AA2 5 PHE A 77 PHE A 79 0 SHEET 2 AA2 5 LEU A 105 SER A 110 -1 O ALA A 108 N PHE A 79 SHEET 3 AA2 5 ARG A 28 LYS A 35 1 N ILE A 32 O ILE A 107 SHEET 4 AA2 5 LYS A 48 PRO A 52 -1 O TYR A 49 N VAL A 31 SHEET 5 AA2 5 VAL B -10 VAL B -9 1 O VAL B -10 N LYS A 48 SHEET 1 AA3 5 PHE B 77 PHE B 79 0 SHEET 2 AA3 5 LEU B 105 SER B 110 -1 O ALA B 108 N PHE B 79 SHEET 3 AA3 5 ARG B 28 LYS B 35 1 N ILE B 32 O LEU B 105 SHEET 4 AA3 5 LYS B 48 PRO B 52 -1 O TYR B 49 N VAL B 31 SHEET 5 AA3 5 VAL C -10 VAL C -9 1 O VAL C -10 N LEU B 50 SHEET 1 AA4 2 THR C -7 VAL C -6 0 SHEET 2 AA4 2 VAL C 114 TYR C 115 -1 O TYR C 115 N THR C -7 CRYST1 75.910 44.750 78.480 90.00 118.54 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013173 0.000000 0.007165 0.00000 SCALE2 0.000000 0.022346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014505 0.00000