HEADER LYASE 21-FEB-21 7LUB TITLE CRYSTAL STRUCTURE OF RECOMBINANT HUMAN FUMARASE IN COMPLEX WITH D-2- TITLE 2 AMINO-3-PHOSPHONO-PROPIONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUMARATE HYDRATASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FUMARASE; COMPND 5 EC: 4.2.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A-SUMO KEYWDS FUMARASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR I.A.CARDOSO,M.C.NONATO REVDAT 3 25-OCT-23 7LUB 1 REMARK REVDAT 2 22-MAR-23 7LUB 1 JRNL REVDAT 1 23-FEB-22 7LUB 0 JRNL AUTH K.G.HICKS,A.A.CLUNTUN,H.L.SCHUBERT,S.R.HACKETT,J.A.BERG, JRNL AUTH 2 P.G.LEONARD,M.A.AJALLA ALEIXO,Y.ZHOU,A.J.BOTT,S.R.SALVATORE, JRNL AUTH 3 F.CHANG,A.BLEVINS,P.BARTA,S.TILLEY,A.LEIFER,A.GUZMAN,A.AROK, JRNL AUTH 4 S.FOGARTY,J.M.WINTER,H.C.AHN,K.N.ALLEN,S.BLOCK,I.A.CARDOSO, JRNL AUTH 5 J.DING,I.DREVENY,W.C.GASPER,Q.HO,A.MATSUURA,M.J.PALLADINO, JRNL AUTH 6 S.PRAJAPATI,P.SUN,K.TITTMANN,D.R.TOLAN,J.UNTERLASS, JRNL AUTH 7 A.P.VANDEMARK,M.G.VANDER HEIDEN,B.A.WEBB,C.H.YUN,P.ZHAO, JRNL AUTH 8 B.WANG,F.J.SCHOPFER,C.P.HILL,M.C.NONATO,F.L.MULLER,J.E.COX, JRNL AUTH 9 J.RUTTER JRNL TITL PROTEIN-METABOLITE INTERACTOMICS OF CARBOHYDRATE METABOLISM JRNL TITL 2 REVEAL REGULATION OF LACTATE DEHYDROGENASE. JRNL REF SCIENCE V. 379 996 2023 JRNL REFN ESSN 1095-9203 JRNL PMID 36893255 JRNL DOI 10.1126/SCIENCE.ABM3452 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 64478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : 5% REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3399 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4722 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 214 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6824 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.182 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.126 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7009 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6701 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9514 ; 1.266 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15406 ; 1.174 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 923 ; 5.819 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 299 ;34.486 ;23.913 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1142 ;12.981 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;19.305 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 966 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8045 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1483 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 49 510 B 49 510 14212 0.060 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7LUB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS SIRUS REMARK 200 BEAMLINE : MANACA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.3236 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67921 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 49.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 39.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5UPP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.5, 1% V/V 2 REMARK 280 -METHYLPENTANEDIOL AND 16% M/V PEG 10 K, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.49533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.74767 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.12150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.37383 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.86917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.49533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 38.74767 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 19.37383 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 58.12150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 96.86917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -201.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -190.90300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -58.12150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 761 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 792 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 823 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 787 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 45 REMARK 465 SER A 46 REMARK 465 GLN A 47 REMARK 465 GLY A 464 REMARK 465 LYS A 483 REMARK 465 ALA A 486 REMARK 465 ALA B 45 REMARK 465 SER B 46 REMARK 465 GLN B 47 REMARK 465 ASN B 48 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 GLU A 443 CG CD OE1 OE2 REMARK 470 LYS A 447 CG CD CE NZ REMARK 470 ASN A 460 CG OD1 ND2 REMARK 470 ASP A 466 CG OD1 OD2 REMARK 470 LYS A 470 CG CD CE NZ REMARK 470 LYS A 473 CG CD CE NZ REMARK 470 LYS A 477 CG CD CE NZ REMARK 470 ILE A 487 CG1 CG2 CD1 REMARK 470 LEU A 489 CG CD1 CD2 REMARK 470 LEU A 492 CG CD1 CD2 REMARK 470 THR A 493 OG1 CG2 REMARK 470 GLU A 495 CG CD OE1 OE2 REMARK 470 PHE A 497 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 499 CG CD OE1 OE2 REMARK 470 LYS A 502 CG CD CE NZ REMARK 470 LYS A 504 CG CD CE NZ REMARK 470 PHE B 50 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 LYS B 122 CG CD CE NZ REMARK 470 GLU B 168 CG CD OE1 OE2 REMARK 470 GLU B 443 CG CD OE1 OE2 REMARK 470 LYS B 447 CG CD CE NZ REMARK 470 LYS B 467 CG CD CE NZ REMARK 470 LYS B 470 CG CD CE NZ REMARK 470 LYS B 473 CG CD CE NZ REMARK 470 LYS B 477 CG CD CE NZ REMARK 470 GLU B 488 CG CD OE1 OE2 REMARK 470 LEU B 489 CG CD1 CD2 REMARK 470 GLU B 495 CG CD OE1 OE2 REMARK 470 LYS B 504 CG CD CE NZ REMARK 470 LYS B 510 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 142 -158.94 -125.11 REMARK 500 GLN A 142 -159.20 -125.11 REMARK 500 VAL A 206 -58.17 -123.41 REMARK 500 ALA A 239 -158.01 -120.71 REMARK 500 THR A 277 -124.14 48.08 REMARK 500 PHE A 403 -114.74 58.47 REMARK 500 CYS A 434 -66.47 -146.29 REMARK 500 GLN B 142 -159.74 -124.36 REMARK 500 GLN B 142 -158.33 -124.36 REMARK 500 VAL B 206 -57.74 -124.11 REMARK 500 ALA B 239 -153.77 -121.91 REMARK 500 THR B 277 -125.03 48.93 REMARK 500 PHE B 403 -113.45 58.40 REMARK 500 CYS B 434 -65.16 -146.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APO B 601 DBREF 7LUB A 45 510 UNP P07954 FUMH_HUMAN 45 510 DBREF 7LUB B 45 510 UNP P07954 FUMH_HUMAN 45 510 SEQRES 1 A 466 ALA SER GLN ASN SER PHE ARG ILE GLU TYR ASP THR PHE SEQRES 2 A 466 GLY GLU LEU LYS VAL PRO ASN ASP LYS TYR TYR GLY ALA SEQRES 3 A 466 GLN THR VAL ARG SER THR MET ASN PHE LYS ILE GLY GLY SEQRES 4 A 466 VAL THR GLU ARG MET PRO THR PRO VAL ILE LYS ALA PHE SEQRES 5 A 466 GLY ILE LEU LYS ARG ALA ALA ALA GLU VAL ASN GLN ASP SEQRES 6 A 466 TYR GLY LEU ASP PRO LYS ILE ALA ASN ALA ILE MET LYS SEQRES 7 A 466 ALA ALA ASP GLU VAL ALA GLU GLY LYS LEU ASN ASP HIS SEQRES 8 A 466 PHE PRO LEU VAL VAL TRP GLN THR GLY SER GLY THR GLN SEQRES 9 A 466 THR ASN MET ASN VAL ASN GLU VAL ILE SER ASN ARG ALA SEQRES 10 A 466 ILE GLU MET LEU GLY GLY GLU LEU GLY SER LYS ILE PRO SEQRES 11 A 466 VAL HIS PRO ASN ASP HIS VAL ASN LYS SER GLN SER SER SEQRES 12 A 466 ASN ASP THR PHE PRO THR ALA MET HIS ILE ALA ALA ALA SEQRES 13 A 466 ILE GLU VAL HIS GLU VAL LEU LEU PRO GLY LEU GLN LYS SEQRES 14 A 466 LEU HIS ASP ALA LEU ASP ALA LYS SER LYS GLU PHE ALA SEQRES 15 A 466 GLN ILE ILE LYS ILE GLY ARG THR HIS THR GLN ASP ALA SEQRES 16 A 466 VAL PRO LEU THR LEU GLY GLN GLU PHE SER GLY TYR VAL SEQRES 17 A 466 GLN GLN VAL LYS TYR ALA MET THR ARG ILE LYS ALA ALA SEQRES 18 A 466 MET PRO ARG ILE TYR GLU LEU ALA ALA GLY GLY THR ALA SEQRES 19 A 466 VAL GLY THR GLY LEU ASN THR ARG ILE GLY PHE ALA GLU SEQRES 20 A 466 LYS VAL ALA ALA LYS VAL ALA ALA LEU THR GLY LEU PRO SEQRES 21 A 466 PHE VAL THR ALA PRO ASN LYS PHE GLU ALA LEU ALA ALA SEQRES 22 A 466 HIS ASP ALA LEU VAL GLU LEU SER GLY ALA MET ASN THR SEQRES 23 A 466 THR ALA CYS SER LEU MET LYS ILE ALA ASN ASP ILE ARG SEQRES 24 A 466 PHE LEU GLY SER GLY PRO ARG SER GLY LEU GLY GLU LEU SEQRES 25 A 466 ILE LEU PRO GLU ASN GLU PRO GLY SER SER ILE MET PRO SEQRES 26 A 466 GLY LYS VAL ASN PRO THR GLN CYS GLU ALA MET THR MET SEQRES 27 A 466 VAL ALA ALA GLN VAL MET GLY ASN HIS VAL ALA VAL THR SEQRES 28 A 466 VAL GLY GLY SER ASN GLY HIS PHE GLU LEU ASN VAL PHE SEQRES 29 A 466 LYS PRO MET MET ILE LYS ASN VAL LEU HIS SER ALA ARG SEQRES 30 A 466 LEU LEU GLY ASP ALA SER VAL SER PHE THR GLU ASN CYS SEQRES 31 A 466 VAL VAL GLY ILE GLN ALA ASN THR GLU ARG ILE ASN LYS SEQRES 32 A 466 LEU MET ASN GLU SER LEU MET LEU VAL THR ALA LEU ASN SEQRES 33 A 466 PRO HIS ILE GLY TYR ASP LYS ALA ALA LYS ILE ALA LYS SEQRES 34 A 466 THR ALA HIS LYS ASN GLY SER THR LEU LYS GLU THR ALA SEQRES 35 A 466 ILE GLU LEU GLY TYR LEU THR ALA GLU GLN PHE ASP GLU SEQRES 36 A 466 TRP VAL LYS PRO LYS ASP MET LEU GLY PRO LYS SEQRES 1 B 466 ALA SER GLN ASN SER PHE ARG ILE GLU TYR ASP THR PHE SEQRES 2 B 466 GLY GLU LEU LYS VAL PRO ASN ASP LYS TYR TYR GLY ALA SEQRES 3 B 466 GLN THR VAL ARG SER THR MET ASN PHE LYS ILE GLY GLY SEQRES 4 B 466 VAL THR GLU ARG MET PRO THR PRO VAL ILE LYS ALA PHE SEQRES 5 B 466 GLY ILE LEU LYS ARG ALA ALA ALA GLU VAL ASN GLN ASP SEQRES 6 B 466 TYR GLY LEU ASP PRO LYS ILE ALA ASN ALA ILE MET LYS SEQRES 7 B 466 ALA ALA ASP GLU VAL ALA GLU GLY LYS LEU ASN ASP HIS SEQRES 8 B 466 PHE PRO LEU VAL VAL TRP GLN THR GLY SER GLY THR GLN SEQRES 9 B 466 THR ASN MET ASN VAL ASN GLU VAL ILE SER ASN ARG ALA SEQRES 10 B 466 ILE GLU MET LEU GLY GLY GLU LEU GLY SER LYS ILE PRO SEQRES 11 B 466 VAL HIS PRO ASN ASP HIS VAL ASN LYS SER GLN SER SER SEQRES 12 B 466 ASN ASP THR PHE PRO THR ALA MET HIS ILE ALA ALA ALA SEQRES 13 B 466 ILE GLU VAL HIS GLU VAL LEU LEU PRO GLY LEU GLN LYS SEQRES 14 B 466 LEU HIS ASP ALA LEU ASP ALA LYS SER LYS GLU PHE ALA SEQRES 15 B 466 GLN ILE ILE LYS ILE GLY ARG THR HIS THR GLN ASP ALA SEQRES 16 B 466 VAL PRO LEU THR LEU GLY GLN GLU PHE SER GLY TYR VAL SEQRES 17 B 466 GLN GLN VAL LYS TYR ALA MET THR ARG ILE LYS ALA ALA SEQRES 18 B 466 MET PRO ARG ILE TYR GLU LEU ALA ALA GLY GLY THR ALA SEQRES 19 B 466 VAL GLY THR GLY LEU ASN THR ARG ILE GLY PHE ALA GLU SEQRES 20 B 466 LYS VAL ALA ALA LYS VAL ALA ALA LEU THR GLY LEU PRO SEQRES 21 B 466 PHE VAL THR ALA PRO ASN LYS PHE GLU ALA LEU ALA ALA SEQRES 22 B 466 HIS ASP ALA LEU VAL GLU LEU SER GLY ALA MET ASN THR SEQRES 23 B 466 THR ALA CYS SER LEU MET LYS ILE ALA ASN ASP ILE ARG SEQRES 24 B 466 PHE LEU GLY SER GLY PRO ARG SER GLY LEU GLY GLU LEU SEQRES 25 B 466 ILE LEU PRO GLU ASN GLU PRO GLY SER SER ILE MET PRO SEQRES 26 B 466 GLY LYS VAL ASN PRO THR GLN CYS GLU ALA MET THR MET SEQRES 27 B 466 VAL ALA ALA GLN VAL MET GLY ASN HIS VAL ALA VAL THR SEQRES 28 B 466 VAL GLY GLY SER ASN GLY HIS PHE GLU LEU ASN VAL PHE SEQRES 29 B 466 LYS PRO MET MET ILE LYS ASN VAL LEU HIS SER ALA ARG SEQRES 30 B 466 LEU LEU GLY ASP ALA SER VAL SER PHE THR GLU ASN CYS SEQRES 31 B 466 VAL VAL GLY ILE GLN ALA ASN THR GLU ARG ILE ASN LYS SEQRES 32 B 466 LEU MET ASN GLU SER LEU MET LEU VAL THR ALA LEU ASN SEQRES 33 B 466 PRO HIS ILE GLY TYR ASP LYS ALA ALA LYS ILE ALA LYS SEQRES 34 B 466 THR ALA HIS LYS ASN GLY SER THR LEU LYS GLU THR ALA SEQRES 35 B 466 ILE GLU LEU GLY TYR LEU THR ALA GLU GLN PHE ASP GLU SEQRES 36 B 466 TRP VAL LYS PRO LYS ASP MET LEU GLY PRO LYS HET APO A 601 10 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 12 HET APO B 601 10 HETNAM APO D-2-AMINO-3-PHOSPHONO-PROPIONIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 APO 2(C3 H8 N O5 P) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 8 HOH *298(H2 O) HELIX 1 AA1 GLY A 69 PHE A 79 1 11 HELIX 2 AA2 GLY A 83 ARG A 87 5 5 HELIX 3 AA3 PRO A 89 GLN A 108 1 20 HELIX 4 AA4 ASP A 109 GLY A 111 5 3 HELIX 5 AA5 ASP A 113 GLU A 129 1 17 HELIX 6 AA6 LEU A 132 PHE A 136 5 5 HELIX 7 AA7 GLY A 146 LEU A 165 1 20 HELIX 8 AA8 SER A 186 VAL A 206 1 21 HELIX 9 AA9 VAL A 206 PHE A 225 1 20 HELIX 10 AB1 LEU A 244 ALA A 265 1 22 HELIX 11 AB2 GLY A 288 GLY A 302 1 15 HELIX 12 AB3 ASN A 310 ALA A 317 1 8 HELIX 13 AB4 HIS A 318 GLY A 346 1 29 HELIX 14 AB5 PRO A 374 ASN A 400 1 27 HELIX 15 AB6 PHE A 408 ASN A 433 1 26 HELIX 16 AB7 CYS A 434 ILE A 438 5 5 HELIX 17 AB8 ASN A 441 GLU A 451 1 11 HELIX 18 AB9 SER A 452 ASN A 460 5 9 HELIX 19 AC1 ASP A 466 GLY A 479 1 14 HELIX 20 AC2 THR A 493 VAL A 501 1 9 HELIX 21 AC3 LYS A 502 MET A 506 5 5 HELIX 22 AC4 GLY B 69 PHE B 79 1 11 HELIX 23 AC5 GLY B 83 ARG B 87 5 5 HELIX 24 AC6 PRO B 89 GLN B 108 1 20 HELIX 25 AC7 ASP B 109 GLY B 111 5 3 HELIX 26 AC8 ASP B 113 GLU B 129 1 17 HELIX 27 AC9 LEU B 132 PHE B 136 5 5 HELIX 28 AD1 GLY B 146 LEU B 165 1 20 HELIX 29 AD2 SER B 186 VAL B 206 1 21 HELIX 30 AD3 VAL B 206 PHE B 225 1 20 HELIX 31 AD4 LEU B 244 ALA B 265 1 22 HELIX 32 AD5 GLY B 288 GLY B 302 1 15 HELIX 33 AD6 ASN B 310 ALA B 317 1 8 HELIX 34 AD7 HIS B 318 GLY B 346 1 29 HELIX 35 AD8 PRO B 374 ASN B 400 1 27 HELIX 36 AD9 PHE B 408 CYS B 434 1 27 HELIX 37 AE1 VAL B 435 ILE B 438 5 4 HELIX 38 AE2 ASN B 441 GLU B 451 1 11 HELIX 39 AE3 SER B 452 ALA B 458 5 7 HELIX 40 AE4 LEU B 459 GLY B 464 1 6 HELIX 41 AE5 GLY B 464 GLY B 479 1 16 HELIX 42 AE6 THR B 481 GLY B 490 1 10 HELIX 43 AE7 THR B 493 VAL B 501 1 9 HELIX 44 AE8 LYS B 502 MET B 506 5 5 SHEET 1 AA1 2 PHE A 50 ASP A 55 0 SHEET 2 AA1 2 GLY A 58 PRO A 63 -1 O LEU A 60 N GLU A 53 SHEET 1 AA2 2 ILE A 229 THR A 234 0 SHEET 2 AA2 2 GLN A 237 THR A 243 -1 O ALA A 239 N GLY A 232 SHEET 1 AA3 2 GLU A 271 LEU A 272 0 SHEET 2 AA3 2 VAL A 306 THR A 307 1 O VAL A 306 N LEU A 272 SHEET 1 AA4 2 LEU A 356 ILE A 357 0 SHEET 2 AA4 2 GLN A 439 ALA A 440 -1 O GLN A 439 N ILE A 357 SHEET 1 AA5 2 PHE B 50 ASP B 55 0 SHEET 2 AA5 2 GLY B 58 PRO B 63 -1 O LEU B 60 N GLU B 53 SHEET 1 AA6 2 ILE B 229 THR B 234 0 SHEET 2 AA6 2 GLN B 237 THR B 243 -1 O ALA B 239 N GLY B 232 SHEET 1 AA7 2 GLU B 271 LEU B 272 0 SHEET 2 AA7 2 VAL B 306 THR B 307 1 O VAL B 306 N LEU B 272 SHEET 1 AA8 2 LEU B 356 ILE B 357 0 SHEET 2 AA8 2 GLN B 439 ALA B 440 -1 O GLN B 439 N ILE B 357 CISPEP 1 ILE A 173 PRO A 174 0 -2.64 CISPEP 2 GLY A 348 PRO A 349 0 8.09 CISPEP 3 ILE B 173 PRO B 174 0 -1.94 CISPEP 4 GLY B 348 PRO B 349 0 8.61 SITE 1 AC1 14 SER A 145 THR A 147 SER A 186 SER A 187 SITE 2 AC1 14 ASN A 188 SER A 365 ILE A 367 MET A 368 SITE 3 AC1 14 LYS A 371 ASN A 373 GOL A 602 HOH A 722 SITE 4 AC1 14 THR B 234 HIS B 235 SITE 1 AC2 9 ASN A 150 MET A 151 ASN A 178 ASN A 182 SITE 2 AC2 9 SER A 187 SER A 365 SER A 366 ILE A 367 SITE 3 AC2 9 APO A 601 SITE 1 AC3 6 ALA A 295 LYS A 296 THR A 307 PRO A 309 SITE 2 AC3 6 HOH A 711 HOH A 720 SITE 1 AC4 11 ARG A 261 ALA A 264 ALA A 265 GLU A 323 SITE 2 AC4 11 HOH A 706 HOH A 745 ARG B 261 ALA B 264 SITE 3 AC4 11 ALA B 265 GLU B 323 HOH B 769 SITE 1 AC5 15 THR A 234 HIS A 235 SER B 145 THR B 147 SITE 2 AC5 15 SER B 186 SER B 187 ASN B 188 SER B 365 SITE 3 AC5 15 ILE B 367 MET B 368 LYS B 371 ASN B 373 SITE 4 AC5 15 HOH B 709 HOH B 755 HOH B 795 CRYST1 190.903 190.903 116.243 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005238 0.003024 0.000000 0.00000 SCALE2 0.000000 0.006049 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008603 0.00000