HEADER HYDROLASE 23-FEB-21 7LUU TITLE KINETIC AND STRUCTURAL CHARACTERIZATION OF THE FIRST B3 METALLO-BETA- TITLE 2 LACTAMASE WITH AN ACTIVE SITE GLUTAMIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUBCLASS B3 METALLO-BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM INDICUM (STRAIN DSM 16412 / CCM SOURCE 3 7286 / MTCC 6364 / B90A); SOURCE 4 ORGANISM_TAXID: 861109; SOURCE 5 STRAIN: DSM 16412 / CCM 7286 / MTCC 6364 / B90A; SOURCE 6 GENE: SIDU_11385; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS ANTIBIOTIC DEGRADATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.WILSON,E.KNAVEN,M.T.MORRIS,G.SCHENK REVDAT 3 18-OCT-23 7LUU 1 REMARK REVDAT 2 09-FEB-22 7LUU 1 JRNL REVDAT 1 28-JUL-21 7LUU 0 JRNL AUTH L.A.WILSON,E.G.KNAVEN,M.T.MORRIS,M.MONTEIRO PEDROSO, JRNL AUTH 2 C.J.SCHOFIELD,T.B.BRUCK,M.BODEN,D.W.WAITE,P.HUGENHOLTZ, JRNL AUTH 3 L.GUDDAT,G.SCHENK JRNL TITL KINETIC AND STRUCTURAL CHARACTERIZATION OF THE FIRST B3 JRNL TITL 2 METALLO-BETA-LACTAMASE WITH AN ACTIVE-SITE GLUTAMIC ACID. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 65 93621 2021 JRNL REFN ESSN 1098-6596 JRNL PMID 34310207 JRNL DOI 10.1128/AAC.00936-21 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31397 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.370 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1900 - 4.0400 1.00 2256 154 0.1516 0.1481 REMARK 3 2 4.0400 - 3.2100 1.00 2168 147 0.1277 0.1629 REMARK 3 3 3.2100 - 2.8000 1.00 2109 144 0.1430 0.1671 REMARK 3 4 2.8000 - 2.5500 1.00 2116 143 0.1469 0.1819 REMARK 3 5 2.5500 - 2.3600 1.00 2088 143 0.1459 0.2022 REMARK 3 6 2.3600 - 2.2200 1.00 2099 143 0.1427 0.1771 REMARK 3 7 2.2200 - 2.1100 1.00 2089 141 0.1334 0.1922 REMARK 3 8 2.1100 - 2.0200 1.00 2070 141 0.1361 0.1557 REMARK 3 9 2.0200 - 1.9400 1.00 2086 142 0.1289 0.1703 REMARK 3 10 1.9400 - 1.8800 1.00 2073 142 0.1323 0.1497 REMARK 3 11 1.8800 - 1.8200 1.00 2088 141 0.1361 0.1792 REMARK 3 12 1.8200 - 1.7700 1.00 2062 140 0.1486 0.1811 REMARK 3 13 1.7700 - 1.7200 1.00 2056 140 0.1537 0.2121 REMARK 3 14 1.7200 - 1.6800 0.98 2037 139 0.1722 0.1994 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.126 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 2203 REMARK 3 ANGLE : 1.549 2950 REMARK 3 CHIRALITY : 0.111 301 REMARK 3 PLANARITY : 0.011 378 REMARK 3 DIHEDRAL : 26.263 818 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3801 31.1710 18.4758 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.1449 REMARK 3 T33: 0.1334 T12: -0.0201 REMARK 3 T13: -0.0167 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.5816 L22: 1.9739 REMARK 3 L33: 2.3292 L12: -0.6479 REMARK 3 L13: -0.8194 L23: 0.1922 REMARK 3 S TENSOR REMARK 3 S11: 0.0497 S12: 0.0671 S13: 0.2017 REMARK 3 S21: -0.1239 S22: 0.0552 S23: -0.1121 REMARK 3 S31: -0.1889 S32: 0.1078 S33: -0.0755 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5115 28.3107 25.5565 REMARK 3 T TENSOR REMARK 3 T11: 0.1441 T22: 0.1378 REMARK 3 T33: 0.1412 T12: 0.0218 REMARK 3 T13: 0.0032 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.5355 L22: 2.0649 REMARK 3 L33: 2.1865 L12: -0.3058 REMARK 3 L13: -0.2185 L23: -0.4224 REMARK 3 S TENSOR REMARK 3 S11: -0.0435 S12: -0.1172 S13: 0.0688 REMARK 3 S21: 0.1774 S22: 0.0557 S23: 0.0753 REMARK 3 S31: -0.0640 S32: 0.1454 S33: -0.0563 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6562 28.2366 23.1184 REMARK 3 T TENSOR REMARK 3 T11: 0.1406 T22: 0.1371 REMARK 3 T33: 0.1492 T12: 0.0169 REMARK 3 T13: -0.0117 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.1527 L22: 1.1438 REMARK 3 L33: 1.5836 L12: -0.2875 REMARK 3 L13: -0.2851 L23: 0.4460 REMARK 3 S TENSOR REMARK 3 S11: -0.0594 S12: -0.0287 S13: 0.0626 REMARK 3 S21: 0.0000 S22: 0.1100 S23: -0.2118 REMARK 3 S31: -0.0555 S32: 0.1414 S33: -0.0523 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5025 20.8310 22.9552 REMARK 3 T TENSOR REMARK 3 T11: 0.1361 T22: 0.1541 REMARK 3 T33: 0.1539 T12: 0.0162 REMARK 3 T13: 0.0000 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.0045 L22: 1.0863 REMARK 3 L33: 0.7354 L12: -0.0632 REMARK 3 L13: 0.1518 L23: 0.4990 REMARK 3 S TENSOR REMARK 3 S11: -0.0318 S12: -0.0469 S13: -0.0320 REMARK 3 S21: 0.0959 S22: 0.0704 S23: -0.1097 REMARK 3 S31: -0.0081 S32: 0.1301 S33: -0.0309 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0114 13.9729 15.9029 REMARK 3 T TENSOR REMARK 3 T11: 0.1717 T22: 0.1262 REMARK 3 T33: 0.1959 T12: 0.0072 REMARK 3 T13: -0.0043 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 2.3599 L22: 0.7838 REMARK 3 L33: 1.5744 L12: -0.1785 REMARK 3 L13: -0.2982 L23: -0.0453 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: 0.0363 S13: -0.1845 REMARK 3 S21: 0.0095 S22: 0.0321 S23: 0.0622 REMARK 3 S31: 0.1447 S32: 0.0429 S33: 0.0057 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3440 22.6206 13.5155 REMARK 3 T TENSOR REMARK 3 T11: 0.1169 T22: 0.1229 REMARK 3 T33: 0.1745 T12: -0.0007 REMARK 3 T13: 0.0024 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 1.0762 L22: 1.1513 REMARK 3 L33: 2.6854 L12: 0.1238 REMARK 3 L13: 0.4112 L23: 0.4609 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: 0.0667 S13: -0.0184 REMARK 3 S21: 0.0365 S22: 0.0613 S23: 0.0969 REMARK 3 S31: -0.0216 S32: 0.0166 S33: -0.1058 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5111 16.7212 7.3044 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.2024 REMARK 3 T33: 0.2678 T12: -0.0300 REMARK 3 T13: -0.0445 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.8783 L22: 2.4602 REMARK 3 L33: 3.7850 L12: -1.1532 REMARK 3 L13: -1.8209 L23: 1.8629 REMARK 3 S TENSOR REMARK 3 S11: -0.0600 S12: 0.0658 S13: -0.2205 REMARK 3 S21: -0.1155 S22: -0.1856 S23: 0.5219 REMARK 3 S31: -0.0127 S32: -0.2685 S33: 0.2594 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1049 32.1932 18.6460 REMARK 3 T TENSOR REMARK 3 T11: 0.1713 T22: 0.1431 REMARK 3 T33: 0.1697 T12: 0.0254 REMARK 3 T13: 0.0048 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.8477 L22: 0.9399 REMARK 3 L33: 0.8676 L12: -0.5532 REMARK 3 L13: 0.1939 L23: 0.3167 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: -0.0401 S13: 0.0121 REMARK 3 S21: 0.0476 S22: 0.0591 S23: 0.0610 REMARK 3 S31: -0.0528 S32: -0.1490 S33: -0.0356 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2076 26.2452 0.1824 REMARK 3 T TENSOR REMARK 3 T11: 0.2135 T22: 0.1979 REMARK 3 T33: 0.2311 T12: -0.0207 REMARK 3 T13: -0.0755 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 0.5776 L22: 1.8496 REMARK 3 L33: 6.0108 L12: 0.3590 REMARK 3 L13: 0.3090 L23: 2.3134 REMARK 3 S TENSOR REMARK 3 S11: -0.1423 S12: 0.1963 S13: 0.0543 REMARK 3 S21: -0.3925 S22: 0.0412 S23: 0.2928 REMARK 3 S31: -0.5698 S32: -0.0538 S33: 0.0692 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000252402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31438 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 48.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VPE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IN 0.2 M LISO4, 0.1 M TRIS, PH 8.5, REMARK 280 AND 1.26 M NH4SO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.32000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.71000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.32000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.71000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 464 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 682 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 ILE A -18 REMARK 465 ALA A -17 REMARK 465 THR A -16 REMARK 465 MET A -15 REMARK 465 THR A -14 REMARK 465 ILE A -13 REMARK 465 ALA A -12 REMARK 465 ALA A -11 REMARK 465 SER A -10 REMARK 465 LEU A -9 REMARK 465 ALA A -8 REMARK 465 ILE A -7 REMARK 465 SER A -6 REMARK 465 PRO A -5 REMARK 465 ALA A -4 REMARK 465 ALA A -3 REMARK 465 ALA A -2 REMARK 465 ALA A -1 REMARK 465 THR A 0 REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 MET A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 MET A 10 REMARK 465 ASP A 11 REMARK 465 ARG A 12 REMARK 465 ALA A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 ALA A 16 REMARK 465 ARG A 17 REMARK 465 ALA A 18 REMARK 465 THR A 285 REMARK 465 SER A 286 REMARK 465 LYS A 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 96 O HOH A 401 1.84 REMARK 500 O3 GOL A 319 O HOH A 402 1.94 REMARK 500 O HOH A 404 O HOH A 599 1.94 REMARK 500 O2 GOL A 311 O HOH A 403 1.97 REMARK 500 O HOH A 677 O HOH A 684 1.98 REMARK 500 O HOH A 401 O HOH A 456 2.01 REMARK 500 O3 GOL A 311 O HOH A 404 2.06 REMARK 500 O2 GOL A 324 O HOH A 405 2.12 REMARK 500 O1 GOL A 311 O HOH A 406 2.14 REMARK 500 NH2 ARG A 86 O1 GOL A 310 2.16 REMARK 500 O3 GOL A 324 O HOH A 407 2.16 REMARK 500 O HOH A 617 O HOH A 641 2.17 REMARK 500 NH1 ARG A 86 O HOH A 404 2.17 REMARK 500 O1 GOL A 321 O HOH A 408 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 443 O HOH A 452 4455 2.08 REMARK 500 O HOH A 408 O HOH A 512 4456 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 159 CG - SD - CE ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 47 38.72 -98.97 REMARK 500 ASP A 71 172.24 66.60 REMARK 500 ALA A 73 -149.57 49.53 REMARK 500 PRO A 103 57.76 -96.36 REMARK 500 CYS A 240 81.03 -154.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 102 OE2 REMARK 620 2 HIS A 104 ND1 92.7 REMARK 620 3 HIS A 180 NE2 106.9 107.1 REMARK 620 4 HOH A 444 O 103.0 115.5 125.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 106 OD2 REMARK 620 2 HIS A 107 NE2 92.2 REMARK 620 3 HIS A 247 NE2 95.2 98.6 REMARK 620 4 GOL A 306 O2 87.1 178.2 83.2 REMARK 620 5 HOH A 428 O 169.1 94.3 92.6 86.1 REMARK 620 6 HOH A 444 O 85.6 105.1 156.3 73.2 84.2 REMARK 620 N 1 2 3 4 5 DBREF1 7LUU A -19 287 UNP A0A1L5BQA7_SPHIB DBREF2 7LUU A A0A1L5BQA7 1 307 SEQRES 1 A 307 MET ILE ALA THR MET THR ILE ALA ALA SER LEU ALA ILE SEQRES 2 A 307 SER PRO ALA ALA ALA ALA THR GLY PRO GLU PRO GLU ALA SEQRES 3 A 307 MET ALA ALA MET ASP ARG ALA GLY GLY ALA ARG ALA SER SEQRES 4 A 307 ASP ASP PRO LEU THR ARG PRO MET ALA VAL GLU ARG ALA SEQRES 5 A 307 LYS GLU TRP LEU ALA PRO LEU PRO PRO GLU ARG VAL PHE SEQRES 6 A 307 GLY ASN SER TYR LEU VAL GLY PHE ALA GLY LEU SER VAL SEQRES 7 A 307 ALA LEU ILE ASP THR GLY ALA GLY LEU VAL LEU ILE ASP SEQRES 8 A 307 GLY ALA LEU PRO GLN ALA ALA PRO MET ILE LEU SER ASN SEQRES 9 A 307 VAL ARG LYS LEU GLY PHE ASP PRO ARG ASP ILE LYS PHE SEQRES 10 A 307 ILE LEU SER THR GLU PRO HIS TYR ASP HIS ALA GLY GLY SEQRES 11 A 307 ILE ALA ALA LEU ALA ARG ASP THR GLY ALA THR VAL VAL SEQRES 12 A 307 ALA SER ARG ARG GLY ALA GLU GLY LEU ARG ALA GLY ALA SEQRES 13 A 307 HIS ALA LYS ASP ASP PRO GLN PHE ASP TYR GLY GLY ALA SEQRES 14 A 307 TRP PRO ALA VAL SER ARG LEU ARG VAL MET LYS ASP GLY SEQRES 15 A 307 GLU VAL LEU ARG ILE GLY ARG ALA SER ILE THR ALA HIS SEQRES 16 A 307 ALA THR PRO GLY HIS THR MET GLY SER MET THR TRP SER SEQRES 17 A 307 TRP ASN ALA CYS GLU GLY LYS ARG CYS LYS ALA ILE VAL SEQRES 18 A 307 PHE ALA SER SER LEU ASN PRO VAL SER ALA ASP ARG TYR SEQRES 19 A 307 ARG PHE THR ALA PRO SER SER ALA PRO ILE VAL LYS GLY SEQRES 20 A 307 PHE GLU ALA SER TYR ARG ARG MET GLY ALA LEU LYS CYS SEQRES 21 A 307 ASP ILE LEU ILE SER ALA HIS PRO ASP ASN ALA GLY ALA SEQRES 22 A 307 GLY ARG TYR GLY SER GLY SER GLY ALA CYS ARG SER TYR SEQRES 23 A 307 ALA GLU ARG SER ARG ARG LEU LEU ALA LYS ARG LEU ALA SEQRES 24 A 307 GLU GLU ARG ARG GLU THR SER LYS HET ZN A 301 1 HET ZN A 302 1 HET SO4 A 303 5 HET SO4 A 304 5 HET GOL A 305 6 HET GOL A 306 6 HET GOL A 307 6 HET GOL A 308 6 HET GOL A 309 6 HET GOL A 310 6 HET GOL A 311 6 HET GOL A 312 6 HET GOL A 313 6 HET GOL A 314 6 HET GOL A 315 6 HET GOL A 316 6 HET GOL A 317 6 HET GOL A 318 6 HET GOL A 319 6 HET GOL A 320 6 HET GOL A 321 6 HET GOL A 322 6 HET GOL A 323 6 HET GOL A 324 6 HET GOL A 325 6 HET SO4 A 326 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 SO4 3(O4 S 2-) FORMUL 6 GOL 21(C3 H8 O3) FORMUL 28 HOH *290(H2 O) HELIX 1 AA1 ALA A 28 LEU A 36 1 9 HELIX 2 AA2 LEU A 74 GLN A 76 5 3 HELIX 3 AA3 ALA A 77 LEU A 88 1 12 HELIX 4 AA4 ASP A 91 ARG A 93 5 3 HELIX 5 AA5 HIS A 104 GLY A 109 1 6 HELIX 6 AA6 GLY A 110 GLY A 119 1 10 HELIX 7 AA7 SER A 125 GLY A 135 1 11 HELIX 8 AA8 GLN A 143 GLY A 147 5 5 HELIX 9 AA9 ALA A 218 SER A 220 5 3 HELIX 10 AB1 SER A 221 LEU A 238 1 18 HELIX 11 AB2 HIS A 247 GLY A 252 5 6 HELIX 12 AB3 GLY A 261 GLU A 281 1 21 SHEET 1 AA1 7 GLU A 42 PHE A 45 0 SHEET 2 AA1 7 SER A 48 LEU A 50 -1 O LEU A 50 N GLU A 42 SHEET 3 AA1 7 ALA A 59 ASP A 62 -1 O LEU A 60 N TYR A 49 SHEET 4 AA1 7 LEU A 67 ILE A 70 -1 O VAL A 68 N ILE A 61 SHEET 5 AA1 7 ILE A 95 LEU A 99 1 O LEU A 99 N LEU A 69 SHEET 6 AA1 7 THR A 121 ALA A 124 1 O VAL A 123 N ILE A 98 SHEET 7 AA1 7 LEU A 156 VAL A 158 1 O ARG A 157 N VAL A 122 SHEET 1 AA2 6 VAL A 164 ILE A 167 0 SHEET 2 AA2 6 ALA A 170 ALA A 176 -1 O ILE A 172 N LEU A 165 SHEET 3 AA2 6 MET A 185 GLU A 193 -1 O SER A 188 N THR A 173 SHEET 4 AA2 6 ARG A 196 ALA A 203 -1 O ILE A 200 N TRP A 189 SHEET 5 AA2 6 ILE A 242 SER A 245 1 O ILE A 244 N VAL A 201 SHEET 6 AA2 6 GLY A 257 SER A 258 -1 O GLY A 257 N LEU A 243 SSBOND 1 CYS A 192 CYS A 197 1555 1555 2.11 SSBOND 2 CYS A 240 CYS A 263 1555 1555 2.14 LINK OE2 GLU A 102 ZN ZN A 301 1555 1555 1.91 LINK ND1 HIS A 104 ZN ZN A 301 1555 1555 2.03 LINK OD2 ASP A 106 ZN ZN A 302 1555 1555 2.09 LINK NE2 HIS A 107 ZN ZN A 302 1555 1555 2.01 LINK NE2 HIS A 180 ZN ZN A 301 1555 1555 2.01 LINK NE2 HIS A 247 ZN ZN A 302 1555 1555 2.04 LINK ZN ZN A 301 O HOH A 444 1555 1555 1.93 LINK ZN ZN A 302 O2 GOL A 306 1555 1555 2.13 LINK ZN ZN A 302 O HOH A 428 1555 1555 2.07 LINK ZN ZN A 302 O HOH A 444 1555 1555 2.26 CRYST1 62.640 75.420 56.670 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015964 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017646 0.00000