HEADER HYDROLASE 24-FEB-21 7LV6 TITLE THE STRUCTURE OF MALL MUTANT ENZYME S536R FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGO-1,6-GLUCOSIDASE 1; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: DEXTRIN 6-ALPHA-D-GLUCANOHYDROLASE,OLIGOSACCHARIDE ALPHA-1, COMPND 5 6-GLUCOSIDASE 1,SUCRASE-ISOMALTASE 1,ISOMALTASE 1; COMPND 6 EC: 3.2.1.10; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: MALL, YVDL, BSU34560; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5A; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTB KEYWDS TIM BARREL, GLYCOSIDE HYDROLASE, ENZYME DESIGN, ROSETTA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.HAMILL,E.J.PRENTICE,C.D.BAHL,I.S.TRUEBRIDGE,V.L.ARCUS REVDAT 2 18-OCT-23 7LV6 1 REMARK REVDAT 1 09-MAR-22 7LV6 0 JRNL AUTH C.J.HAMILL,V.L.ARCUS,E.J.PRENTICE,C.BAHL,I.TRUEBRIDGE JRNL TITL UREA BINDING TO GUIDE RATIONAL DESIGN OF MUTATIONS THAT JRNL TITL 2 INFLUENCE ENZYME DYNAMICS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 208724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 10435 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6027 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2059 REMARK 3 BIN FREE R VALUE SET COUNT : 297 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4611 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 785 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LV6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1000254803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953735 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION NOV 1, 2016 REMARK 200 BUILT=20161205 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 208774 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 44.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.54800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.6.04 REMARK 200 STARTING MODEL: PDB ENTRY 4M56 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.0, 0.2 M AMMONIUM REMARK 280 ACETATE, 18% W/V PEG10000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.49950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -24 REMARK 465 SER B -23 REMARK 465 TYR B -22 REMARK 465 TYR B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 ASP B -14 REMARK 465 TYR B -13 REMARK 465 ASP B -12 REMARK 465 ILE B -11 REMARK 465 PRO B -10 REMARK 465 THR B -9 REMARK 465 THR B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 GLU B 214 CG CD OE1 OE2 REMARK 470 THR B 215 OG1 CG2 REMARK 470 ASP B 216 CG OD1 OD2 REMARK 470 GLU B 408 CD OE1 OE2 REMARK 470 GLN B 489 CG CD OE1 NE2 REMARK 470 GLU B 505 CG CD OE1 OE2 REMARK 470 GLU B 516 CG CD OE1 OE2 REMARK 470 LYS B 517 CG CD CE NZ REMARK 470 GLU B 541 CG CD OE1 OE2 REMARK 470 LYS B 546 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR B 394 OE1 GLU B 406 1.58 REMARK 500 O HOH B 842 O HOH B 1161 1.77 REMARK 500 O HOH B 816 O HOH B 920 1.93 REMARK 500 O HOH B 892 O HOH B 1337 1.95 REMARK 500 O HOH B 842 O HOH B 1118 1.97 REMARK 500 O HOH B 1442 O HOH B 1581 2.01 REMARK 500 O HOH B 1332 O HOH B 1387 2.01 REMARK 500 OD1 ASP B 85 O HOH B 801 2.05 REMARK 500 SD MET B 414 O HOH B 875 2.11 REMARK 500 OE2 GLU B 400 O HOH B 802 2.15 REMARK 500 OD1 ASP B 85 O HOH B 803 2.19 REMARK 500 O HOH B 1072 O HOH B 1552 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 18 -66.94 -95.84 REMARK 500 SER B 145 154.61 83.88 REMARK 500 PHE B 163 -135.80 -103.79 REMARK 500 VAL B 200 55.08 28.99 REMARK 500 VAL B 244 -65.52 -131.89 REMARK 500 GLU B 274 -105.23 -119.25 REMARK 500 ASN B 291 55.98 -157.47 REMARK 500 ARG B 344 -109.06 -123.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1585 DISTANCE = 6.21 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 20 OD1 REMARK 620 2 ASN B 22 OD1 84.3 REMARK 620 3 ASP B 24 OD1 89.2 82.7 REMARK 620 4 PHE B 26 O 86.8 167.7 88.7 REMARK 620 5 ASP B 28 OD2 88.5 86.8 169.4 101.5 REMARK 620 6 HOH B 862 O 167.6 87.8 80.3 99.5 100.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M56 RELATED DB: PDB REMARK 900 WILD TYPE MALL FROM BACILLUS SUBTILIS DBREF 7LV6 B 3 561 UNP O06994 O16G1_BACSU 3 561 SEQADV 7LV6 MET B -24 UNP O06994 EXPRESSION TAG SEQADV 7LV6 SER B -23 UNP O06994 EXPRESSION TAG SEQADV 7LV6 TYR B -22 UNP O06994 EXPRESSION TAG SEQADV 7LV6 TYR B -21 UNP O06994 EXPRESSION TAG SEQADV 7LV6 HIS B -20 UNP O06994 EXPRESSION TAG SEQADV 7LV6 HIS B -19 UNP O06994 EXPRESSION TAG SEQADV 7LV6 HIS B -18 UNP O06994 EXPRESSION TAG SEQADV 7LV6 HIS B -17 UNP O06994 EXPRESSION TAG SEQADV 7LV6 HIS B -16 UNP O06994 EXPRESSION TAG SEQADV 7LV6 HIS B -15 UNP O06994 EXPRESSION TAG SEQADV 7LV6 ASP B -14 UNP O06994 EXPRESSION TAG SEQADV 7LV6 TYR B -13 UNP O06994 EXPRESSION TAG SEQADV 7LV6 ASP B -12 UNP O06994 EXPRESSION TAG SEQADV 7LV6 ILE B -11 UNP O06994 EXPRESSION TAG SEQADV 7LV6 PRO B -10 UNP O06994 EXPRESSION TAG SEQADV 7LV6 THR B -9 UNP O06994 EXPRESSION TAG SEQADV 7LV6 THR B -8 UNP O06994 EXPRESSION TAG SEQADV 7LV6 GLU B -7 UNP O06994 EXPRESSION TAG SEQADV 7LV6 ASN B -6 UNP O06994 EXPRESSION TAG SEQADV 7LV6 LEU B -5 UNP O06994 EXPRESSION TAG SEQADV 7LV6 TYR B -4 UNP O06994 EXPRESSION TAG SEQADV 7LV6 PHE B -3 UNP O06994 EXPRESSION TAG SEQADV 7LV6 GLN B -2 UNP O06994 EXPRESSION TAG SEQADV 7LV6 GLY B -1 UNP O06994 EXPRESSION TAG SEQADV 7LV6 ALA B 0 UNP O06994 EXPRESSION TAG SEQADV 7LV6 MET B 1 UNP O06994 EXPRESSION TAG SEQADV 7LV6 GLY B 2 UNP O06994 EXPRESSION TAG SEQADV 7LV6 ARG B 536 UNP O06994 SER 536 ENGINEERED MUTATION SEQRES 1 B 586 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 B 586 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 B 586 GLY GLU TRP TRP LYS GLU ALA VAL VAL TYR GLN ILE TYR SEQRES 4 B 586 PRO ARG SER PHE TYR ASP ALA ASN GLY ASP GLY PHE GLY SEQRES 5 B 586 ASP LEU GLN GLY VAL ILE GLN LYS LEU ASP TYR ILE LYS SEQRES 6 B 586 ASN LEU GLY ALA ASP VAL ILE TRP LEU SER PRO VAL PHE SEQRES 7 B 586 ASP SER PRO GLN ASP ASP ASN GLY TYR ASP ILE SER ASP SEQRES 8 B 586 TYR LYS ASN MET TYR GLU LYS PHE GLY THR ASN GLU ASP SEQRES 9 B 586 MET PHE GLN LEU ILE ASP GLU VAL HIS LYS ARG GLY MET SEQRES 10 B 586 LYS ILE VAL MET ASP LEU VAL VAL ASN HIS THR SER ASP SEQRES 11 B 586 GLU HIS ALA TRP PHE ALA GLU SER ARG LYS SER LYS ASP SEQRES 12 B 586 ASN PRO TYR ARG ASP TYR TYR LEU TRP LYS ASP PRO LYS SEQRES 13 B 586 PRO ASP GLY SER GLU PRO ASN ASN TRP GLY SER ILE PHE SEQRES 14 B 586 SER GLY SER ALA TRP THR TYR ASP GLU GLY THR GLY GLN SEQRES 15 B 586 TYR TYR LEU HIS TYR PHE SER LYS LYS GLN PRO ASP LEU SEQRES 16 B 586 ASN TRP GLU ASN GLU ALA VAL ARG ARG GLU VAL TYR ASP SEQRES 17 B 586 VAL MET ARG PHE TRP MET ASP ARG GLY VAL ASP GLY TRP SEQRES 18 B 586 ARG MET ASP VAL ILE GLY SER ILE SER LYS TYR THR ASP SEQRES 19 B 586 PHE PRO ASP TYR GLU THR ASP HIS SER ARG SER TYR ILE SEQRES 20 B 586 VAL GLY ARG TYR HIS SER ASN GLY PRO ARG LEU HIS GLU SEQRES 21 B 586 PHE ILE GLN GLU MET ASN ARG GLU VAL LEU SER HIS TYR SEQRES 22 B 586 ASP CYS MET THR VAL GLY GLU ALA ASN GLY SER ASP ILE SEQRES 23 B 586 GLU GLU ALA LYS LYS TYR THR ASP ALA SER ARG GLN GLU SEQRES 24 B 586 LEU ASN MET ILE PHE THR PHE GLU HIS MET ASP ILE ASP SEQRES 25 B 586 LYS GLU GLN ASN SER PRO ASN GLY LYS TRP GLN ILE LYS SEQRES 26 B 586 PRO PHE ASP LEU ILE ALA LEU LYS LYS THR MET THR ARG SEQRES 27 B 586 TRP GLN THR GLY LEU MET ASN VAL GLY TRP ASN THR LEU SEQRES 28 B 586 TYR PHE GLU ASN HIS ASP GLN PRO ARG VAL ILE SER ARG SEQRES 29 B 586 TRP GLY ASN ASP ARG LYS LEU ARG LYS GLU CYS ALA LYS SEQRES 30 B 586 ALA PHE ALA THR VAL LEU HIS GLY MET LYS GLY THR PRO SEQRES 31 B 586 PHE ILE TYR GLN GLY GLU GLU ILE GLY MET VAL ASN SER SEQRES 32 B 586 ASP MET PRO LEU GLU MET TYR ASP ASP LEU GLU ILE LYS SEQRES 33 B 586 ASN ALA TYR ARG GLU LEU VAL VAL GLU ASN LYS THR MET SEQRES 34 B 586 SER GLU LYS GLU PHE VAL LYS ALA VAL MET ILE LYS GLY SEQRES 35 B 586 ARG ASP HIS ALA ARG THR PRO MET GLN TRP ASP ALA GLY SEQRES 36 B 586 LYS HIS ALA GLY PHE THR ALA GLY ASP PRO TRP ILE PRO SEQRES 37 B 586 VAL ASN SER ARG TYR GLN ASP ILE ASN VAL LYS GLU SER SEQRES 38 B 586 LEU GLU ASP GLN ASP SER ILE PHE PHE TYR TYR GLN LYS SEQRES 39 B 586 LEU ILE GLN LEU ARG LYS GLN TYR LYS ILE MET ILE TYR SEQRES 40 B 586 GLY ASP TYR GLN LEU LEU GLN GLU ASN ASP PRO GLN VAL SEQRES 41 B 586 PHE SER TYR LEU ARG GLU TYR ARG GLY GLU LYS LEU LEU SEQRES 42 B 586 VAL VAL VAL ASN LEU SER GLU GLU LYS ALA LEU PHE GLU SEQRES 43 B 586 ALA PRO PRO GLU LEU ILE HIS GLU ARG TRP LYS VAL LEU SEQRES 44 B 586 ILE ARG ASN TYR PRO GLN GLU ARG ALA ASP LEU LYS SER SEQRES 45 B 586 ILE SER LEU LYS PRO TYR GLU ALA VAL MET GLY ILE SER SEQRES 46 B 586 ILE HET TRS B 701 20 HET GOL B 702 9 HET CA B 703 1 HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 CA CA 2+ FORMUL 5 HOH *785(H2 O) HELIX 1 AA1 GLU B 3 GLU B 7 5 5 HELIX 2 AA2 TYR B 14 PHE B 18 5 5 HELIX 3 AA3 ASP B 28 LYS B 35 1 8 HELIX 4 AA4 LYS B 35 GLY B 43 1 9 HELIX 5 AA5 THR B 76 ARG B 90 1 15 HELIX 6 AA6 HIS B 107 ARG B 114 1 8 HELIX 7 AA7 TYR B 121 TYR B 125 5 5 HELIX 8 AA8 ASN B 174 ARG B 191 1 18 HELIX 9 AA9 VAL B 200 ILE B 204 5 5 HELIX 10 AB1 GLY B 224 SER B 228 5 5 HELIX 11 AB2 ARG B 232 VAL B 244 1 13 HELIX 12 AB3 LEU B 245 TYR B 248 5 4 HELIX 13 AB4 ASP B 260 ASP B 269 1 10 HELIX 14 AB5 ALA B 270 GLN B 273 5 4 HELIX 15 AB6 PHE B 281 ILE B 286 5 6 HELIX 16 AB7 ASN B 294 GLN B 298 5 5 HELIX 17 AB8 ASP B 303 LEU B 318 1 16 HELIX 18 AB9 ARG B 335 GLY B 341 1 7 HELIX 19 AC1 LEU B 346 GLY B 360 1 15 HELIX 20 AC2 GLY B 370 GLY B 374 5 5 HELIX 21 AC3 PRO B 381 TYR B 385 5 5 HELIX 22 AC4 ASP B 387 VAL B 398 1 12 HELIX 23 AC5 SER B 405 GLY B 417 1 13 HELIX 24 AC6 ARG B 418 ARG B 422 5 5 HELIX 25 AC7 GLY B 430 PHE B 435 5 6 HELIX 26 AC8 ASN B 452 ASP B 459 1 8 HELIX 27 AC9 SER B 462 TYR B 477 1 16 HELIX 28 AD1 TYR B 477 GLY B 483 1 7 HELIX 29 AD2 PRO B 523 ILE B 527 5 5 SHEET 1 AA1 8 MET B 277 PHE B 279 0 SHEET 2 AA1 8 MET B 251 GLU B 255 1 N GLY B 254 O PHE B 279 SHEET 3 AA1 8 GLY B 195 MET B 198 1 N MET B 198 O GLU B 255 SHEET 4 AA1 8 LYS B 93 LEU B 98 1 N LEU B 98 O ARG B 197 SHEET 5 AA1 8 VAL B 46 LEU B 49 1 N ILE B 47 O VAL B 95 SHEET 6 AA1 8 VAL B 10 ILE B 13 1 N TYR B 11 O VAL B 46 SHEET 7 AA1 8 THR B 364 TYR B 368 1 O ILE B 367 N VAL B 10 SHEET 8 AA1 8 THR B 325 LEU B 326 1 N LEU B 326 O PHE B 366 SHEET 1 AA2 2 PHE B 53 ASP B 54 0 SHEET 2 AA2 2 ASP B 66 MET B 70 -1 O ASN B 69 N ASP B 54 SHEET 1 AA3 3 TRP B 127 LYS B 128 0 SHEET 2 AA3 3 GLN B 157 LEU B 160 -1 O TYR B 158 N LYS B 128 SHEET 3 AA3 3 TRP B 149 ASP B 152 -1 N ASP B 152 O GLN B 157 SHEET 1 AA4 5 GLN B 486 LEU B 488 0 SHEET 2 AA4 5 VAL B 495 TYR B 502 -1 O SER B 497 N LEU B 488 SHEET 3 AA4 5 GLU B 505 ASN B 512 -1 O VAL B 511 N PHE B 496 SHEET 4 AA4 5 ALA B 555 SER B 560 -1 O GLY B 558 N LEU B 508 SHEET 5 AA4 5 TRP B 531 ARG B 536 -1 N LEU B 534 O MET B 557 SHEET 1 AA5 2 ALA B 518 GLU B 521 0 SHEET 2 AA5 2 SER B 547 LEU B 550 -1 O ILE B 548 N PHE B 520 LINK OD1 ASP B 20 CA CA B 703 1555 1555 2.27 LINK OD1 ASN B 22 CA CA B 703 1555 1555 2.35 LINK OD1 ASP B 24 CA CA B 703 1555 1555 2.33 LINK O PHE B 26 CA CA B 703 1555 1555 2.29 LINK OD2 ASP B 28 CA CA B 703 1555 1555 2.30 LINK CA CA B 703 O HOH B 862 1555 1555 2.30 CRYST1 48.749 100.999 61.749 90.00 113.06 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020513 0.000000 0.008733 0.00000 SCALE2 0.000000 0.009901 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017601 0.00000