HEADER IMMUNE SYSTEM 26-FEB-21 7LVU TITLE STRUCTURE OF RSV F-DIRECTED VHH CL184 COMPND MOL_ID: 1; COMPND 2 MOLECULE: F-VHH-CL184; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: FREESTYLE293 KEYWDS NANOBODY, VHH, ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.-L.HSIEH,J.S.MCLELLAN REVDAT 3 25-OCT-23 7LVU 1 REMARK REVDAT 2 30-NOV-22 7LVU 1 JRNL REVDAT 1 24-MAR-21 7LVU 0 JRNL AUTH I.ROSSEY,C.L.HSIEH,K.SEDEYN,M.BALLEGEER,B.SCHEPENS, JRNL AUTH 2 J.S.MCLELLAN,X.SAELENS JRNL TITL A VULNERABLE, MEMBRANE-PROXIMAL SITE IN HUMAN RESPIRATORY JRNL TITL 2 SYNCYTIAL VIRUS F REVEALED BY A PREFUSION-SPECIFIC JRNL TITL 3 SINGLE-DOMAIN ANTIBODY. JRNL REF J.VIROL. V. 95 2021 JRNL REFN ESSN 1098-5514 JRNL PMID 33692208 JRNL DOI 10.1128/JVI.02279-20 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 73.6000 - 4.8900 1.00 3026 142 0.2019 0.2268 REMARK 3 2 4.8900 - 3.8800 1.00 2836 139 0.1566 0.1868 REMARK 3 3 3.8800 - 3.3900 1.00 2773 178 0.1770 0.2062 REMARK 3 4 3.3900 - 3.0800 1.00 2752 150 0.2028 0.2118 REMARK 3 5 3.0800 - 2.8600 1.00 2780 118 0.2134 0.2421 REMARK 3 6 2.8600 - 2.6900 1.00 2753 129 0.2201 0.2629 REMARK 3 7 2.6900 - 2.5600 1.00 2711 140 0.2303 0.2276 REMARK 3 8 2.5600 - 2.4500 1.00 2733 134 0.2367 0.2798 REMARK 3 9 2.4500 - 2.3500 1.00 2709 144 0.2421 0.3179 REMARK 3 10 2.3500 - 2.2700 1.00 2715 135 0.2311 0.2578 REMARK 3 11 2.2700 - 2.2000 1.00 2710 146 0.2399 0.2175 REMARK 3 12 2.2000 - 2.1400 1.00 2692 131 0.2362 0.2765 REMARK 3 13 2.1400 - 2.0800 1.00 2685 144 0.2316 0.2431 REMARK 3 14 2.0800 - 2.0300 1.00 2702 130 0.2513 0.2751 REMARK 3 15 2.0300 - 1.9800 0.99 2640 152 0.2574 0.2937 REMARK 3 16 1.9800 - 1.9400 0.98 2615 155 0.2699 0.2857 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 2:113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.637 13.232 -14.884 REMARK 3 T TENSOR REMARK 3 T11: 0.0715 T22: 0.0964 REMARK 3 T33: 0.1287 T12: -0.0144 REMARK 3 T13: 0.0041 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 2.8135 L22: 2.5472 REMARK 3 L33: 3.7671 L12: 0.8507 REMARK 3 L13: -1.1782 L23: -0.3247 REMARK 3 S TENSOR REMARK 3 S11: 0.0732 S12: -0.1625 S13: 0.1788 REMARK 3 S21: 0.0383 S22: -0.0256 S23: -0.1077 REMARK 3 S31: -0.1494 S32: 0.4213 S33: -0.0067 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.612 -13.093 -16.816 REMARK 3 T TENSOR REMARK 3 T11: 0.1270 T22: 0.1792 REMARK 3 T33: 0.1181 T12: -0.0455 REMARK 3 T13: -0.0066 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 2.7807 L22: 3.8510 REMARK 3 L33: 4.7534 L12: -0.4988 REMARK 3 L13: -0.3502 L23: 0.0898 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: -0.2228 S13: 0.1134 REMARK 3 S21: 0.1088 S22: 0.1744 S23: 0.0198 REMARK 3 S31: -0.2986 S32: 0.2502 S33: -0.0511 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN C AND RESID 2:113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.043 3.456 -39.978 REMARK 3 T TENSOR REMARK 3 T11: 0.2864 T22: 0.1383 REMARK 3 T33: 0.1477 T12: 0.0375 REMARK 3 T13: 0.0263 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 3.9045 L22: 2.3913 REMARK 3 L33: 3.5633 L12: -0.9532 REMARK 3 L13: 1.2928 L23: 0.5511 REMARK 3 S TENSOR REMARK 3 S11: 0.2307 S12: 0.3961 S13: -0.1139 REMARK 3 S21: -0.2836 S22: -0.1336 S23: 0.0324 REMARK 3 S31: 0.0681 S32: 0.1190 S33: -0.0514 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN D AND RESID 1:113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.850 -14.662 -43.395 REMARK 3 T TENSOR REMARK 3 T11: 0.3205 T22: 0.2544 REMARK 3 T33: 0.1970 T12: -0.2068 REMARK 3 T13: 0.0208 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 2.5158 L22: 3.8638 REMARK 3 L33: 4.4140 L12: -0.6710 REMARK 3 L13: -1.8003 L23: 1.1902 REMARK 3 S TENSOR REMARK 3 S11: 0.0450 S12: -0.2744 S13: 0.3364 REMARK 3 S21: -0.3757 S22: 0.1825 S23: -0.1623 REMARK 3 S31: -0.9317 S32: 0.7750 S33: -0.0376 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46193 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 73.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VAK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 2.0 M AMMONIUM REMARK 280 FORMATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.98950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 166.48425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.49475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.98950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.49475 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 166.48425 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 289 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 ARG A -21 REMARK 465 PRO A -20 REMARK 465 THR A -19 REMARK 465 TRP A -18 REMARK 465 ALA A -17 REMARK 465 TRP A -16 REMARK 465 TRP A -15 REMARK 465 LEU A -14 REMARK 465 PHE A -13 REMARK 465 LEU A -12 REMARK 465 VAL A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 LEU A -8 REMARK 465 ALA A -7 REMARK 465 LEU A -6 REMARK 465 TRP A -5 REMARK 465 ALA A -4 REMARK 465 PRO A -3 REMARK 465 ALA A -2 REMARK 465 ARG A -1 REMARK 465 GLY A 0 REMARK 465 GLN A 1 REMARK 465 HIS A 114 REMARK 465 HIS A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 MET B -22 REMARK 465 ARG B -21 REMARK 465 PRO B -20 REMARK 465 THR B -19 REMARK 465 TRP B -18 REMARK 465 ALA B -17 REMARK 465 TRP B -16 REMARK 465 TRP B -15 REMARK 465 LEU B -14 REMARK 465 PHE B -13 REMARK 465 LEU B -12 REMARK 465 VAL B -11 REMARK 465 LEU B -10 REMARK 465 LEU B -9 REMARK 465 LEU B -8 REMARK 465 ALA B -7 REMARK 465 LEU B -6 REMARK 465 TRP B -5 REMARK 465 ALA B -4 REMARK 465 PRO B -3 REMARK 465 ALA B -2 REMARK 465 ARG B -1 REMARK 465 GLY B 0 REMARK 465 HIS B 114 REMARK 465 HIS B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 HIS B 119 REMARK 465 MET C -22 REMARK 465 ARG C -21 REMARK 465 PRO C -20 REMARK 465 THR C -19 REMARK 465 TRP C -18 REMARK 465 ALA C -17 REMARK 465 TRP C -16 REMARK 465 TRP C -15 REMARK 465 LEU C -14 REMARK 465 PHE C -13 REMARK 465 LEU C -12 REMARK 465 VAL C -11 REMARK 465 LEU C -10 REMARK 465 LEU C -9 REMARK 465 LEU C -8 REMARK 465 ALA C -7 REMARK 465 LEU C -6 REMARK 465 TRP C -5 REMARK 465 ALA C -4 REMARK 465 PRO C -3 REMARK 465 ALA C -2 REMARK 465 ARG C -1 REMARK 465 GLY C 0 REMARK 465 GLN C 1 REMARK 465 HIS C 114 REMARK 465 HIS C 115 REMARK 465 HIS C 116 REMARK 465 HIS C 117 REMARK 465 HIS C 118 REMARK 465 HIS C 119 REMARK 465 MET D -22 REMARK 465 ARG D -21 REMARK 465 PRO D -20 REMARK 465 THR D -19 REMARK 465 TRP D -18 REMARK 465 ALA D -17 REMARK 465 TRP D -16 REMARK 465 TRP D -15 REMARK 465 LEU D -14 REMARK 465 PHE D -13 REMARK 465 LEU D -12 REMARK 465 VAL D -11 REMARK 465 LEU D -10 REMARK 465 LEU D -9 REMARK 465 LEU D -8 REMARK 465 ALA D -7 REMARK 465 LEU D -6 REMARK 465 TRP D -5 REMARK 465 ALA D -4 REMARK 465 PRO D -3 REMARK 465 ALA D -2 REMARK 465 ARG D -1 REMARK 465 GLY D 0 REMARK 465 HIS D 114 REMARK 465 HIS D 115 REMARK 465 HIS D 116 REMARK 465 HIS D 117 REMARK 465 HIS D 118 REMARK 465 HIS D 119 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 GLU C 44 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 282 O HOH B 285 1.82 REMARK 500 O HOH C 267 O HOH C 275 1.85 REMARK 500 O HOH A 277 O HOH A 287 1.89 REMARK 500 NE2 GLN B 81 O HOH B 201 1.92 REMARK 500 OG1 THR A 76 O HOH A 201 1.94 REMARK 500 O HOH D 268 O HOH D 275 2.00 REMARK 500 O HOH A 286 O HOH A 288 2.01 REMARK 500 O HOH A 275 O HOH A 290 2.02 REMARK 500 OD2 ASP A 101 O HOH A 202 2.03 REMARK 500 O HOH B 216 O HOH B 281 2.03 REMARK 500 OE1 GLN B 105 O HOH B 202 2.04 REMARK 500 OH TYR C 91 O HOH C 201 2.04 REMARK 500 O HOH B 212 O HOH B 265 2.05 REMARK 500 O HOH D 252 O HOH D 256 2.06 REMARK 500 OD2 ASP A 72 O HOH A 201 2.08 REMARK 500 O HOH B 279 O HOH B 288 2.08 REMARK 500 O HOH D 233 O HOH D 271 2.11 REMARK 500 OE1 GLN C 5 O HOH C 202 2.12 REMARK 500 OE1 GLN B 27 O HOH B 203 2.13 REMARK 500 O HOH B 214 O HOH D 286 2.13 REMARK 500 O TRP D 103 O HOH D 201 2.15 REMARK 500 N GLN D 1 O HOH D 202 2.17 REMARK 500 O GLN C 27 O HOH C 203 2.17 REMARK 500 O HOH B 226 O HOH B 275 2.17 REMARK 500 O HOH A 292 O HOH A 297 2.18 REMARK 500 OE1 GLN A 108 O HOH A 203 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 271 O HOH A 271 5455 2.05 REMARK 500 O HOH A 290 O HOH D 259 4555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 85 CD GLU A 85 OE2 0.075 REMARK 500 GLN D 64 CB GLN D 64 CG 0.198 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 88 164.49 179.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 85 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 7LVU A -22 119 PDB 7LVU 7LVU -22 119 DBREF 7LVU B -22 119 PDB 7LVU 7LVU -22 119 DBREF 7LVU C -22 119 PDB 7LVU 7LVU -22 119 DBREF 7LVU D -22 119 PDB 7LVU 7LVU -22 119 SEQRES 1 A 152 MET ARG PRO THR TRP ALA TRP TRP LEU PHE LEU VAL LEU SEQRES 2 A 152 LEU LEU ALA LEU TRP ALA PRO ALA ARG GLY GLN VAL GLN SEQRES 3 A 152 LEU GLN GLU SER GLY GLY GLY LEU VAL GLN ALA GLY GLY SEQRES 4 A 152 SER LEU ARG LEU SER CYS ALA ALA SER GLY GLN THR PHE SEQRES 5 A 152 SER GLY TYR VAL THR GLY TRP PHE ARG GLN ALA PRO GLY SEQRES 6 A 152 LYS GLU ARG GLU PHE VAL ALA LEU ILE ALA TRP SER GLY SEQRES 7 A 152 GLY ARG LEU TYR TYR ALA ASP SER VAL GLN GLY ARG PHE SEQRES 8 A 152 THR ILE SER ARG ASP ASN ALA GLU THR THR VAL TYR LEU SEQRES 9 A 152 GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA VAL TYR SEQRES 10 A 152 TYR CYS ALA ALA LYS ARG GLY GLY ALA VAL THR ALA ALA SEQRES 11 A 152 GLU TRP TYR ASP TYR TRP GLY GLN GLY THR GLN VAL THR SEQRES 12 A 152 VAL SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 152 MET ARG PRO THR TRP ALA TRP TRP LEU PHE LEU VAL LEU SEQRES 2 B 152 LEU LEU ALA LEU TRP ALA PRO ALA ARG GLY GLN VAL GLN SEQRES 3 B 152 LEU GLN GLU SER GLY GLY GLY LEU VAL GLN ALA GLY GLY SEQRES 4 B 152 SER LEU ARG LEU SER CYS ALA ALA SER GLY GLN THR PHE SEQRES 5 B 152 SER GLY TYR VAL THR GLY TRP PHE ARG GLN ALA PRO GLY SEQRES 6 B 152 LYS GLU ARG GLU PHE VAL ALA LEU ILE ALA TRP SER GLY SEQRES 7 B 152 GLY ARG LEU TYR TYR ALA ASP SER VAL GLN GLY ARG PHE SEQRES 8 B 152 THR ILE SER ARG ASP ASN ALA GLU THR THR VAL TYR LEU SEQRES 9 B 152 GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA VAL TYR SEQRES 10 B 152 TYR CYS ALA ALA LYS ARG GLY GLY ALA VAL THR ALA ALA SEQRES 11 B 152 GLU TRP TYR ASP TYR TRP GLY GLN GLY THR GLN VAL THR SEQRES 12 B 152 VAL SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 C 152 MET ARG PRO THR TRP ALA TRP TRP LEU PHE LEU VAL LEU SEQRES 2 C 152 LEU LEU ALA LEU TRP ALA PRO ALA ARG GLY GLN VAL GLN SEQRES 3 C 152 LEU GLN GLU SER GLY GLY GLY LEU VAL GLN ALA GLY GLY SEQRES 4 C 152 SER LEU ARG LEU SER CYS ALA ALA SER GLY GLN THR PHE SEQRES 5 C 152 SER GLY TYR VAL THR GLY TRP PHE ARG GLN ALA PRO GLY SEQRES 6 C 152 LYS GLU ARG GLU PHE VAL ALA LEU ILE ALA TRP SER GLY SEQRES 7 C 152 GLY ARG LEU TYR TYR ALA ASP SER VAL GLN GLY ARG PHE SEQRES 8 C 152 THR ILE SER ARG ASP ASN ALA GLU THR THR VAL TYR LEU SEQRES 9 C 152 GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA VAL TYR SEQRES 10 C 152 TYR CYS ALA ALA LYS ARG GLY GLY ALA VAL THR ALA ALA SEQRES 11 C 152 GLU TRP TYR ASP TYR TRP GLY GLN GLY THR GLN VAL THR SEQRES 12 C 152 VAL SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 152 MET ARG PRO THR TRP ALA TRP TRP LEU PHE LEU VAL LEU SEQRES 2 D 152 LEU LEU ALA LEU TRP ALA PRO ALA ARG GLY GLN VAL GLN SEQRES 3 D 152 LEU GLN GLU SER GLY GLY GLY LEU VAL GLN ALA GLY GLY SEQRES 4 D 152 SER LEU ARG LEU SER CYS ALA ALA SER GLY GLN THR PHE SEQRES 5 D 152 SER GLY TYR VAL THR GLY TRP PHE ARG GLN ALA PRO GLY SEQRES 6 D 152 LYS GLU ARG GLU PHE VAL ALA LEU ILE ALA TRP SER GLY SEQRES 7 D 152 GLY ARG LEU TYR TYR ALA ASP SER VAL GLN GLY ARG PHE SEQRES 8 D 152 THR ILE SER ARG ASP ASN ALA GLU THR THR VAL TYR LEU SEQRES 9 D 152 GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA VAL TYR SEQRES 10 D 152 TYR CYS ALA ALA LYS ARG GLY GLY ALA VAL THR ALA ALA SEQRES 11 D 152 GLU TRP TYR ASP TYR TRP GLY GLN GLY THR GLN VAL THR SEQRES 12 D 152 VAL SER SER HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *354(H2 O) HELIX 1 AA1 TRP A 52A GLY A 54 5 3 HELIX 2 AA2 ASP A 61 GLN A 64 5 4 HELIX 3 AA3 LYS A 83 THR A 87 5 5 HELIX 4 AA4 ALA A 100B TYR A 100F 5 5 HELIX 5 AA5 TRP B 52A GLY B 54 5 3 HELIX 6 AA6 LYS B 83 THR B 87 5 5 HELIX 7 AA7 ALA B 100B TYR B 100F 5 5 HELIX 8 AA8 TRP C 52A GLY C 54 5 3 HELIX 9 AA9 LYS C 83 THR C 87 5 5 HELIX 10 AB1 ALA C 100B TYR C 100F 5 5 HELIX 11 AB2 LYS D 83 THR D 87 5 5 HELIX 12 AB3 ALA D 100B TYR D 100F 5 5 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 AA1 4 THR A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 AA1 4 PHE A 67 ARG A 71 -1 N THR A 68 O GLN A 81 SHEET 1 AA212 GLY A 10 GLN A 13 0 SHEET 2 AA212 THR A 107 SER A 112 1 O THR A 110 N VAL A 12 SHEET 3 AA212 ALA A 88 LYS A 95 -1 N TYR A 90 O THR A 107 SHEET 4 AA212 VAL A 33 GLN A 39 -1 N PHE A 37 O TYR A 91 SHEET 5 AA212 GLU A 46 ALA A 52 -1 O ALA A 49 N TRP A 36 SHEET 6 AA212 ARG A 56 TYR A 59 -1 O ARG A 56 N ALA A 52 SHEET 7 AA212 ARG C 56 TYR C 59 -1 O LEU C 57 N LEU A 57 SHEET 8 AA212 GLU C 46 ALA C 52 -1 N ALA C 52 O ARG C 56 SHEET 9 AA212 VAL C 33 GLN C 39 -1 N TRP C 36 O ALA C 49 SHEET 10 AA212 ALA C 88 LYS C 95 -1 O TYR C 91 N PHE C 37 SHEET 11 AA212 THR C 107 SER C 112 -1 O THR C 107 N TYR C 90 SHEET 12 AA212 GLY C 10 GLN C 13 1 N VAL C 12 O THR C 110 SHEET 1 AA310 TYR A 102 TRP A 103 0 SHEET 2 AA310 ALA A 88 LYS A 95 -1 N ALA A 94 O TYR A 102 SHEET 3 AA310 VAL A 33 GLN A 39 -1 N PHE A 37 O TYR A 91 SHEET 4 AA310 GLU A 46 ALA A 52 -1 O ALA A 49 N TRP A 36 SHEET 5 AA310 ARG A 56 TYR A 59 -1 O ARG A 56 N ALA A 52 SHEET 6 AA310 ARG C 56 TYR C 59 -1 O LEU C 57 N LEU A 57 SHEET 7 AA310 GLU C 46 ALA C 52 -1 N ALA C 52 O ARG C 56 SHEET 8 AA310 VAL C 33 GLN C 39 -1 N TRP C 36 O ALA C 49 SHEET 9 AA310 ALA C 88 LYS C 95 -1 O TYR C 91 N PHE C 37 SHEET 10 AA310 TYR C 102 TRP C 103 -1 O TYR C 102 N ALA C 94 SHEET 1 AA4 4 GLN B 3 SER B 7 0 SHEET 2 AA4 4 LEU B 18 SER B 25 -1 O ALA B 23 N GLN B 5 SHEET 3 AA4 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 AA4 4 PHE B 67 ARG B 71 -1 N THR B 68 O GLN B 81 SHEET 1 AA512 GLY B 10 GLN B 13 0 SHEET 2 AA512 THR B 107 SER B 112 1 O THR B 110 N GLY B 10 SHEET 3 AA512 ALA B 88 LYS B 95 -1 N TYR B 90 O THR B 107 SHEET 4 AA512 VAL B 33 GLN B 39 -1 N VAL B 33 O LYS B 95 SHEET 5 AA512 GLU B 46 ALA B 52 -1 O ALA B 49 N TRP B 36 SHEET 6 AA512 ARG B 56 TYR B 59 -1 O ARG B 56 N ALA B 52 SHEET 7 AA512 ARG D 56 TYR D 59 -1 O LEU D 57 N LEU B 57 SHEET 8 AA512 GLU D 46 ALA D 52 -1 N ALA D 52 O ARG D 56 SHEET 9 AA512 VAL D 33 GLN D 39 -1 N TRP D 36 O ALA D 49 SHEET 10 AA512 ALA D 88 LYS D 95 -1 O TYR D 91 N PHE D 37 SHEET 11 AA512 THR D 107 SER D 112 -1 O THR D 107 N TYR D 90 SHEET 12 AA512 GLY D 10 GLN D 13 1 N GLY D 10 O THR D 110 SHEET 1 AA610 TYR B 102 TRP B 103 0 SHEET 2 AA610 ALA B 88 LYS B 95 -1 N ALA B 94 O TYR B 102 SHEET 3 AA610 VAL B 33 GLN B 39 -1 N VAL B 33 O LYS B 95 SHEET 4 AA610 GLU B 46 ALA B 52 -1 O ALA B 49 N TRP B 36 SHEET 5 AA610 ARG B 56 TYR B 59 -1 O ARG B 56 N ALA B 52 SHEET 6 AA610 ARG D 56 TYR D 59 -1 O LEU D 57 N LEU B 57 SHEET 7 AA610 GLU D 46 ALA D 52 -1 N ALA D 52 O ARG D 56 SHEET 8 AA610 VAL D 33 GLN D 39 -1 N TRP D 36 O ALA D 49 SHEET 9 AA610 ALA D 88 LYS D 95 -1 O TYR D 91 N PHE D 37 SHEET 10 AA610 TYR D 102 TRP D 103 -1 O TYR D 102 N ALA D 94 SHEET 1 AA7 4 GLN C 3 SER C 7 0 SHEET 2 AA7 4 LEU C 18 SER C 25 -1 O ALA C 23 N GLN C 5 SHEET 3 AA7 4 THR C 77 MET C 82 -1 O MET C 82 N LEU C 18 SHEET 4 AA7 4 PHE C 67 ARG C 71 -1 N THR C 68 O GLN C 81 SHEET 1 AA8 4 GLN D 3 SER D 7 0 SHEET 2 AA8 4 LEU D 18 SER D 25 -1 O SER D 21 N SER D 7 SHEET 3 AA8 4 THR D 77 MET D 82 -1 O MET D 82 N LEU D 18 SHEET 4 AA8 4 PHE D 67 ARG D 71 -1 N SER D 70 O TYR D 79 SSBOND 1 CYS A 22 CYS A 92 1555 1555 2.02 SSBOND 2 CYS B 22 CYS B 92 1555 1555 2.02 SSBOND 3 CYS C 22 CYS C 92 1555 1555 2.03 SSBOND 4 CYS D 22 CYS D 92 1555 1555 2.02 CRYST1 73.600 73.600 221.979 90.00 90.00 90.00 P 43 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013587 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004505 0.00000