HEADER TRANSFERASE 26-FEB-21 7LVY TITLE CRYSTAL STRUCTURE OF TETUR04G02350 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLYCOSYLTRANSFERASE 203A2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TETRANYCHUS URTICAE; SOURCE 3 ORGANISM_COMMON: TWO-SPOTTED SPIDER MITE; SOURCE 4 ORGANISM_TAXID: 32264; SOURCE 5 GENE: 107359436, UGT203A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.DANEHSIAN,A.KLUZA,W.DERMAUW,N.WYBOUW,T.VAN LEEUWEN,M.CHRUSZCZ REVDAT 2 18-OCT-23 7LVY 1 REMARK REVDAT 1 02-MAR-22 7LVY 0 JRNL AUTH L.DANEHSIAN,A.KLUZA,W.DERMAUW,N.WYBOUW,T.VAN LEEUWEN, JRNL AUTH 2 M.CHRUSZCZ JRNL TITL CRYSTAL STRUCTURE OF TETUR04G02350 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 39812 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2816 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3220 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3462 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 358 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.82000 REMARK 3 B22 (A**2) : -1.18000 REMARK 3 B33 (A**2) : -1.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.422 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3618 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3424 ; 0.034 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4903 ; 1.684 ; 1.660 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7947 ; 2.275 ; 1.595 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 433 ; 6.001 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;32.340 ;23.352 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 635 ;13.160 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.007 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3989 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 783 ; 0.012 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): 35.3000 15.0780 21.5110 REMARK 3 T TENSOR REMARK 3 T11: 0.1776 T22: 0.1994 REMARK 3 T33: 0.0432 T12: -0.0172 REMARK 3 T13: 0.0622 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 2.4509 L22: 1.0757 REMARK 3 L33: 1.2976 L12: -0.9295 REMARK 3 L13: 0.6991 L23: 0.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: 0.1054 S13: 0.0648 REMARK 3 S21: 0.0354 S22: 0.0292 S23: -0.0323 REMARK 3 S31: -0.2884 S32: 0.1716 S33: 0.0132 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 30.4070 -0.7750 30.0670 REMARK 3 T TENSOR REMARK 3 T11: 0.1559 T22: 0.2020 REMARK 3 T33: 0.0593 T12: 0.0182 REMARK 3 T13: 0.0914 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.3686 L22: 0.4191 REMARK 3 L33: 1.1711 L12: 0.0343 REMARK 3 L13: 0.1823 L23: 0.1293 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.0785 S13: -0.0217 REMARK 3 S21: 0.0730 S22: 0.0551 S23: 0.0055 REMARK 3 S31: 0.0476 S32: 0.0137 S33: -0.0126 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7070 0.3130 43.5490 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.2019 REMARK 3 T33: 0.0424 T12: 0.0165 REMARK 3 T13: 0.0701 T23: 0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.7857 L22: 5.6513 REMARK 3 L33: 1.6276 L12: -0.1693 REMARK 3 L13: -0.0023 L23: 1.4281 REMARK 3 S TENSOR REMARK 3 S11: -0.0745 S12: -0.1812 S13: 0.0017 REMARK 3 S21: 0.0627 S22: 0.0838 S23: 0.0183 REMARK 3 S31: 0.0724 S32: -0.0285 S33: -0.0093 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 203 A 386 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5790 -5.2620 10.5300 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: 0.2094 REMARK 3 T33: 0.0621 T12: -0.0092 REMARK 3 T13: 0.0827 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.3908 L22: 0.6140 REMARK 3 L33: 1.4670 L12: -0.1313 REMARK 3 L13: -0.0224 L23: 0.6021 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: 0.0412 S13: -0.0418 REMARK 3 S21: -0.0314 S22: 0.0854 S23: -0.0180 REMARK 3 S31: 0.0409 S32: 0.1173 S33: -0.0680 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 387 A 426 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1920 5.7710 11.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.1256 T22: 0.2064 REMARK 3 T33: 0.0571 T12: 0.0291 REMARK 3 T13: 0.0445 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.6108 L22: 3.8470 REMARK 3 L33: 3.1645 L12: -0.8543 REMARK 3 L13: -0.8225 L23: 3.0877 REMARK 3 S TENSOR REMARK 3 S11: -0.0715 S12: 0.0122 S13: -0.0757 REMARK 3 S21: -0.1279 S22: -0.0559 S23: 0.3023 REMARK 3 S31: -0.2057 S32: -0.1679 S33: 0.1273 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7LVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255100. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41813 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : 0.47900 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6PNT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M DL-MALIC ACID, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.57950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.79800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.57950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.79800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -35 REMARK 465 ARG A -34 REMARK 465 GLY A -33 REMARK 465 SER A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 GLY A -25 REMARK 465 MET A -24 REMARK 465 ALA A -23 REMARK 465 SER A -22 REMARK 465 MET A -21 REMARK 465 THR A -20 REMARK 465 GLY A -19 REMARK 465 GLY A -18 REMARK 465 GLN A -17 REMARK 465 GLN A -16 REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 ARG A -13 REMARK 465 ASP A -12 REMARK 465 ASP A -7 REMARK 465 ASP A -6 REMARK 465 ASP A -5 REMARK 465 LYS A -4 REMARK 465 ASP A -3 REMARK 465 HIS A -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 0 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 392 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 397 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 397 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 90 -53.10 -132.91 REMARK 500 CYS A 160 5.14 87.53 REMARK 500 PHE A 204 -50.81 -120.40 REMARK 500 TYR A 212 -64.89 -96.11 REMARK 500 LEU A 243 -51.35 74.06 REMARK 500 MET A 270 -8.77 -143.20 REMARK 500 LEU A 349 74.79 -119.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 958 DISTANCE = 6.51 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BGC A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BGC A 503 DBREF 7LVY A 1 426 UNP T1K1R5 T1K1R5_TETUR 1 426 SEQADV 7LVY MET A -35 UNP T1K1R5 INITIATING METHIONINE SEQADV 7LVY ARG A -34 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY GLY A -33 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY SER A -32 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY HIS A -31 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY HIS A -30 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY HIS A -29 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY HIS A -28 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY HIS A -27 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY HIS A -26 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY GLY A -25 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY MET A -24 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY ALA A -23 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY SER A -22 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY MET A -21 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY THR A -20 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY GLY A -19 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY GLY A -18 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY GLN A -17 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY GLN A -16 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY MET A -15 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY GLY A -14 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY ARG A -13 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY ASP A -12 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY LEU A -11 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY TYR A -10 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY ASP A -9 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY ASP A -7 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY ASP A -6 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY ASP A -5 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY LYS A -4 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY ASP A -3 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY HIS A -2 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY PRO A -1 UNP T1K1R5 EXPRESSION TAG SEQADV 7LVY PHE A 0 UNP T1K1R5 EXPRESSION TAG SEQRES 1 A 461 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 461 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR SEQRES 3 A 461 ASP ASP ASP ASP LYS ASP HIS PRO PHE MET LYS ILE PHE SEQRES 4 A 461 PHE ILE PRO MET ASP ALA PHE GLY HIS VAL ASN ALA CYS SEQRES 5 A 461 ILE GLY LEU ALA ARG MET LEU SER GLU PHE GLU HIS GLN SEQRES 6 A 461 CYS ILE PHE ALA VAL PRO LYS ARG TRP CYS LYS PRO ILE SEQRES 7 A 461 GLU GLU TYR ASN PHE LYS VAL GLU ILE VAL LYS ASP PRO SEQRES 8 A 461 THR VAL PRO ASP ASP GLN ASP LEU GLN LYS LYS ASN GLY SEQRES 9 A 461 ASP PHE VAL ASN ARG TYR SER HIS THR LEU SER LYS THR SEQRES 10 A 461 PRO ARG GLU GLN PHE ILE GLU LEU LEU ILE PRO SER ILE SEQRES 11 A 461 ASN ARG ASP ILE HIS TYR ALA LYS ILE ILE ASP GLY GLN SEQRES 12 A 461 ILE PRO THR ILE LEU GLU SER ILE ASP PRO ASP LEU ILE SEQRES 13 A 461 ILE ILE ASP PHE TYR VAL THR LEU PRO SER VAL VAL ASN SEQRES 14 A 461 SER GLY LYS PRO TRP ILE HIS LEU THR SER CYS ASN PRO SEQRES 15 A 461 LEU ASN LEU TYR ALA GLY PRO ASN VAL PRO PRO SER CYS SEQRES 16 A 461 PHE GLY LEU SER ILE ASP THR ASP PRO ASP THR VAL ILE SEQRES 17 A 461 SER TYR LYS GLN PHE ILE ALA GLU SER MET LYS ASP VAL SEQRES 18 A 461 LYS SER ASP PHE ASP GLU TRP LEU VAL SER LYS GLY VAL SEQRES 19 A 461 LYS PRO GLU PRO PHE ALA ILE SER LYS SER SER PRO TYR SEQRES 20 A 461 LEU ASN VAL TYR SER PHE PRO SER ASP LEU ASP TYR SER SEQRES 21 A 461 GLU PHE GLY PRO VAL PRO ASP LYS CYS PHE ARG LEU ASP SEQRES 22 A 461 HIS MET VAL ARG LEU VAL GLN GLU ASP PRO LEU GLY PHE SEQRES 23 A 461 ASP GLU LYS PHE PHE ASP ARG PRO GLY LYS LYS ILE LEU SEQRES 24 A 461 PHE SER LEU GLY SER MET GLY ALA ALA ASP VAL GLU LEU SEQRES 25 A 461 MET LYS ARG LEU VAL GLY ILE LEU GLY LYS SER LYS HIS SEQRES 26 A 461 LEU PHE ILE VAL SER LYS GLY LEU PHE HIS ASP LYS TYR SEQRES 27 A 461 GLU LEU PRO GLU ASN MET ILE GLY ALA LYS PHE LEU ASN SEQRES 28 A 461 GLN MET ALA ILE LEU PRO ARG VAL ASP LEU VAL ILE HIS SEQRES 29 A 461 HIS GLY GLY ASN ASN THR PHE VAL GLU SER LEU TYR PHE SEQRES 30 A 461 GLY LYS PRO SER ILE VAL LEU PRO LEU PHE GLY ASP GLN SEQRES 31 A 461 HIS ASP ASN GLY ARG ARG ALA GLU ASP LYS LYS ILE GLY SEQRES 32 A 461 ARG SER PHE ARG PRO HIS HIS VAL THR GLU ASP GLU LEU SEQRES 33 A 461 LEU MET ALA ILE ASP GLU LEU LEU ASN ASP LYS GLU LEU SEQRES 34 A 461 ASN ASN ARG VAL LEU LYS ILE GLY GLU ASN ILE ARG ASN SEQRES 35 A 461 SER LYS SER ILE ASP ASP PHE ASN LYS LYS ILE GLU GLU SEQRES 36 A 461 ILE ILE LYS VAL HIS LYS HET UDP A 501 25 HET BGC A 502 12 HET BGC A 503 12 HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM BGC BETA-D-GLUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 UDP C9 H14 N2 O12 P2 FORMUL 3 BGC 2(C6 H12 O6) FORMUL 5 HOH *358(H2 O) HELIX 1 AA1 ALA A 10 GLU A 26 1 17 HELIX 2 AA2 PRO A 36 ARG A 38 5 3 HELIX 3 AA3 TRP A 39 GLU A 45 1 7 HELIX 4 AA4 GLN A 65 TYR A 75 1 11 HELIX 5 AA5 SER A 76 LEU A 79 5 4 HELIX 6 AA6 THR A 82 LEU A 90 1 9 HELIX 7 AA7 LEU A 90 GLY A 107 1 18 HELIX 8 AA8 GLN A 108 ASP A 117 1 10 HELIX 9 AA9 LEU A 129 ASN A 134 1 6 HELIX 10 AB1 ASN A 146 ALA A 152 5 7 HELIX 11 AB2 ASP A 168 LYS A 197 1 30 HELIX 12 AB3 TYR A 224 GLY A 228 5 5 HELIX 13 AB4 ASP A 252 ARG A 258 5 7 HELIX 14 AB5 MET A 270 ALA A 273 5 4 HELIX 15 AB6 ASP A 274 GLY A 286 1 13 HELIX 16 AB7 PHE A 299 TYR A 303 5 5 HELIX 17 AB8 ASN A 316 LEU A 321 1 6 HELIX 18 AB9 PRO A 322 VAL A 324 5 3 HELIX 19 AC1 GLY A 332 PHE A 342 1 11 HELIX 20 AC2 ASP A 354 LYS A 365 1 12 HELIX 21 AC3 THR A 377 ASN A 390 1 14 HELIX 22 AC4 ASP A 391 ASN A 407 1 17 HELIX 23 AC5 LYS A 409 HIS A 425 1 17 SHEET 1 AA1 7 LYS A 49 ILE A 52 0 SHEET 2 AA1 7 GLN A 30 VAL A 35 1 N PHE A 33 O GLU A 51 SHEET 3 AA1 7 LYS A 2 PRO A 7 1 N ILE A 3 O GLN A 30 SHEET 4 AA1 7 LEU A 120 ASP A 124 1 O ILE A 122 N PHE A 4 SHEET 5 AA1 7 TRP A 139 THR A 143 1 O LEU A 142 N ILE A 123 SHEET 6 AA1 7 LEU A 213 SER A 217 1 O VAL A 215 N THR A 143 SHEET 7 AA1 7 CYS A 234 LEU A 237 1 O LEU A 237 N TYR A 216 SHEET 1 AA2 6 MET A 309 ALA A 312 0 SHEET 2 AA2 6 LEU A 291 SER A 295 1 N VAL A 294 O ILE A 310 SHEET 3 AA2 6 LYS A 262 SER A 266 1 N PHE A 265 O ILE A 293 SHEET 4 AA2 6 LEU A 326 HIS A 329 1 O ILE A 328 N LEU A 264 SHEET 5 AA2 6 SER A 346 VAL A 348 1 O ILE A 347 N VAL A 327 SHEET 6 AA2 6 GLY A 368 SER A 370 1 O ARG A 369 N VAL A 348 SITE 1 AC1 20 GLY A 12 ASN A 15 ARG A 242 GLN A 245 SITE 2 AC1 20 SER A 269 SER A 295 PHE A 314 LEU A 315 SITE 3 AC1 20 GLN A 317 HIS A 330 ASN A 333 ASN A 334 SITE 4 AC1 20 THR A 335 GLU A 338 BGC A 503 HOH A 601 SITE 5 AC1 20 HOH A 638 HOH A 680 HOH A 749 HOH A 759 SITE 1 AC2 7 TYR A 126 CYS A 145 SER A 159 ASP A 354 SITE 2 AC2 7 HOH A 774 HOH A 814 HOH A 823 SITE 1 AC3 13 HIS A 13 TYR A 126 SER A 144 GLY A 332 SITE 2 AC3 13 ASN A 333 ASN A 334 ASP A 354 GLN A 355 SITE 3 AC3 13 UDP A 501 HOH A 638 HOH A 658 HOH A 680 SITE 4 AC3 13 HOH A 823 CRYST1 111.159 61.596 78.861 90.00 106.15 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008996 0.000000 0.002605 0.00000 SCALE2 0.000000 0.016235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013201 0.00000