data_7LYF # _entry.id 7LYF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7LYF pdb_00007lyf 10.2210/pdb7lyf/pdb WWPDB D_1000255199 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7LYF _pdbx_database_status.recvd_initial_deposition_date 2021-03-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lee, E.H.' 1 ? 'Choi, K.H.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 2530 _citation.page_last 2530 _citation.title 'Structures of flavivirus RNA promoters suggest two binding modes with NS5 polymerase.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-021-22846-1 _citation.pdbx_database_id_PubMed 33953197 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, E.' 1 ? primary 'Bujalowski, P.J.' 2 ? primary 'Teramoto, T.' 3 ? primary 'Gottipati, K.' 4 ? primary 'Scott, S.D.' 5 ? primary 'Padmanabhan, R.' 6 ? primary 'Choi, K.H.' 7 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7LYF _cell.details ? _cell.formula_units_Z ? _cell.length_a 30.924 _cell.length_a_esd ? _cell.length_b 137.558 _cell.length_b_esd ? _cell.length_c 336.877 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LYF _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA promoter stem-loop A fused with tRNA' 44869.621 1 ? ? ;Residues 1-32 and 81-139 form the tRNA scaffold, whereas residues 33-80 match to residues 69-116 of the Dengue virus 2 complete genome GB:KP188569.1 ; ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 7 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GCCCGGAUAGCUCAGUCGGUAGAGCAGCGGAGCUGUUAGUCUACGUGGACCGACAAAGACAGAUUCUUUGAGGGAGCUAA GCUCAACGUAGUUCUAACAGCUCCGCGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GCCCGGAUAGCUCAGUCGGUAGAGCAGCGGAGCUGUUAGUCUACGUGGACCGACAAAGACAGAUUCUUUGAGGGAGCUAA GCUCAACGUAGUUCUAACAGCUCCGCGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 C n 1 4 C n 1 5 G n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 G n 1 11 C n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 U n 1 17 C n 1 18 G n 1 19 G n 1 20 U n 1 21 A n 1 22 G n 1 23 A n 1 24 G n 1 25 C n 1 26 A n 1 27 G n 1 28 C n 1 29 G n 1 30 G n 1 31 A n 1 32 G n 1 33 C n 1 34 U n 1 35 G n 1 36 U n 1 37 U n 1 38 A n 1 39 G n 1 40 U n 1 41 C n 1 42 U n 1 43 A n 1 44 C n 1 45 G n 1 46 U n 1 47 G n 1 48 G n 1 49 A n 1 50 C n 1 51 C n 1 52 G n 1 53 A n 1 54 C n 1 55 A n 1 56 A n 1 57 A n 1 58 G n 1 59 A n 1 60 C n 1 61 A n 1 62 G n 1 63 A n 1 64 U n 1 65 U n 1 66 C n 1 67 U n 1 68 U n 1 69 U n 1 70 G n 1 71 A n 1 72 G n 1 73 G n 1 74 G n 1 75 A n 1 76 G n 1 77 C n 1 78 U n 1 79 A n 1 80 A n 1 81 G n 1 82 C n 1 83 U n 1 84 C n 1 85 A n 1 86 A n 1 87 C n 1 88 G n 1 89 U n 1 90 A n 1 91 G n 1 92 U n 1 93 U n 1 94 C n 1 95 U n 1 96 A n 1 97 A n 1 98 C n 1 99 A n 1 100 G n 1 101 C n 1 102 U n 1 103 C n 1 104 C n 1 105 G n 1 106 C n 1 107 G n 1 108 G n 1 109 G n 1 110 U n 1 111 C n 1 112 C n 1 113 A n 1 114 G n 1 115 G n 1 116 G n 1 117 U n 1 118 U n 1 119 C n 1 120 A n 1 121 A n 1 122 G n 1 123 U n 1 124 C n 1 125 C n 1 126 C n 1 127 U n 1 128 G n 1 129 U n 1 130 U n 1 131 C n 1 132 G n 1 133 G n 1 134 G n 1 135 C n 1 136 G n 1 137 C n 1 138 C n 1 139 A n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 32 ? ? ? ? ? ? ? ? ? 'Dengue virus 2' 11060 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 33 80 ? ? ? ? ? ? ? ? ? 'Dengue virus 2' 11060 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 3 sample 'Biological sequence' 81 139 ? ? ? ? ? ? ? ? ? 'Dengue virus 2' 11060 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7LYF 7LYF ? 1 ? 1 2 GB KP188569.1 KP188569.1 ? 1 CUGUUAGUCUACGUGGACCGACAAAGACAGAUUCUUUGAGGGAGCUAA 69 3 PDB 7LYF 7LYF ? 1 ? 81 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7LYF A 1 ? 32 ? 7LYF 1 ? 32 ? 1 32 2 2 7LYF A 33 ? 80 ? KP188569.1 69 ? 116 ? 33 80 3 3 7LYF A 81 ? 139 ? 7LYF 81 ? 139 ? 81 139 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7LYF _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.83 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 67.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM sodium cacodylate pH 6.9, 9% (w/v) polyethylene glycol 8000, 200 mM KCl, and 100 mM magnesium acetate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX-300' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-06-07 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9785 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9785 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7LYF _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.3660 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10308 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 37 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.991 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.37 _reflns_shell.d_res_low 3.46 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 10308 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.636 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 252.200 _refine.B_iso_mean 155.1158 _refine.B_iso_min 74.060 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7LYF _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.4 _refine.ls_d_res_low 33.6880 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10308 _refine.ls_number_reflns_R_free 1029 _refine.ls_number_reflns_R_work 9279 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.6400 _refine.ls_percent_reflns_R_free 9.9800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2299 _refine.ls_R_factor_R_free 0.2683 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2255 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1TN1,5EW4 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 36.3900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.5900 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 3.4 _refine_hist.d_res_low 33.6880 _refine_hist.number_atoms_solvent 7 _refine_hist.number_atoms_total 2980 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 139 _refine_hist.pdbx_B_iso_mean_ligand 129.26 _refine_hist.pdbx_B_iso_mean_solvent 125.94 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2972 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 3323 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.281 ? 5181 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.057 ? 695 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 139 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 18.901 ? 1665 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.4 3.5431 . . 96 883 65.0000 . . . 0.4350 0.0000 0.3825 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5431 3.7648 . . 150 1342 98.0000 . . . 0.3718 0.0000 0.3223 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.7648 4.0551 . . 150 1353 100.0000 . . . 0.3184 0.0000 0.2823 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.0551 4.4623 . . 156 1395 100.0000 . . . 0.3103 0.0000 0.2594 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.4623 5.1061 . . 154 1396 100.0000 . . . 0.2921 0.0000 0.2356 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.1061 6.4258 . . 157 1409 100.0000 . . . 0.2904 0.0000 0.2352 . . . . . . . . . . . 'X-RAY DIFFRACTION' 6.4258 33.6880 . . 166 1501 99.0000 . . . 0.2216 0.0000 0.1860 . . . . . . . . . . . # _struct.entry_id 7LYF _struct.title 'Dengue virus RNA promoter stem-loop A fused with tRNA-scaffold' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7LYF _struct_keywords.text RNA _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 5 O6 ? ? ? 1_555 B MG . MG ? ? A G 5 A MG 201 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc2 metalc ? ? A U 130 O4 ? ? ? 1_555 B MG . MG ? ? A U 130 A MG 201 1_555 ? ? ? ? ? ? ? 2.972 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 135 N3 ? ? A G 1 A C 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 135 O2 ? ? A G 1 A C 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 135 N4 ? ? A G 1 A C 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 134 N1 ? ? A C 2 A G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 134 O6 ? ? A C 2 A G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 134 N2 ? ? A C 2 A G 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 133 N1 ? ? A C 3 A G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 133 O6 ? ? A C 3 A G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 133 N2 ? ? A C 3 A G 133 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 132 N1 ? ? A C 4 A G 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 132 O6 ? ? A C 4 A G 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 132 N2 ? ? A C 4 A G 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 131 N3 ? ? A G 5 A C 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 131 O2 ? ? A G 5 A C 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 131 N4 ? ? A G 5 A C 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N1 ? ? ? 1_555 A U 130 O2 ? ? A G 6 A U 130 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A G 6 O6 ? ? ? 1_555 A U 130 N3 ? ? A G 6 A U 130 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 129 N3 ? ? A A 7 A U 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 129 O4 ? ? A A 7 A U 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 23 N7 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog23 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 23 N6 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog24 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 25 N3 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 108 N2 ? ? A G 10 A G 108 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog26 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 21 N3 ? ? A A 14 A A 21 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog35 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 111 O2 ? ? A G 15 A C 111 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 111 N3 ? ? A G 15 A C 111 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog37 hydrog ? ? A G 18 N1 ? ? ? 1_555 A U 118 O2 ? ? A G 18 A U 118 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog38 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 119 N3 ? ? A G 19 A C 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 119 O2 ? ? A G 19 A C 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 119 N4 ? ? A G 19 A C 119 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 22 N7 ? ? ? 1_555 A G 109 N1 ? ? A G 22 A G 109 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog42 hydrog ? ? A G 22 O6 ? ? ? 1_555 A G 109 N2 ? ? A G 22 A G 109 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog43 hydrog ? ? A A 26 N6 ? ? ? 1_555 A G 107 O6 ? ? A A 26 A G 107 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog44 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 106 N3 ? ? A G 27 A C 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 106 O2 ? ? A G 27 A C 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 106 N4 ? ? A G 27 A C 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 105 N2 ? ? A C 28 A G 105 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog48 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 104 N3 ? ? A G 29 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 104 O2 ? ? A G 29 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 104 N4 ? ? A G 29 A C 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 103 N3 ? ? A G 30 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 103 O2 ? ? A G 30 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 103 N4 ? ? A G 30 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 31 N1 ? ? ? 1_555 A U 102 N3 ? ? A A 31 A U 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 31 N6 ? ? ? 1_555 A U 102 O4 ? ? A A 31 A U 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 101 N3 ? ? A G 32 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 101 O2 ? ? A G 32 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 101 N4 ? ? A G 32 A C 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 33 N3 ? ? ? 1_555 A G 100 N1 ? ? A C 33 A G 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 33 N4 ? ? ? 1_555 A G 100 O6 ? ? A C 33 A G 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 33 O2 ? ? ? 1_555 A G 100 N2 ? ? A C 33 A G 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 99 N1 ? ? A U 34 A A 99 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog63 hydrog ? ? A U 34 O2 ? ? ? 1_555 A G 100 N2 ? ? A U 34 A G 100 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog64 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 98 O2 ? ? A G 35 A C 98 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog65 hydrog ? ? A U 36 N3 ? ? ? 1_555 A A 97 N1 ? ? A U 36 A A 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 36 O4 ? ? ? 1_555 A A 97 N6 ? ? A U 36 A A 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 96 N1 ? ? A U 37 A A 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A U 37 O4 ? ? ? 1_555 A A 96 N6 ? ? A U 37 A A 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 38 N1 ? ? ? 1_555 A U 95 N3 ? ? A A 38 A U 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 38 N6 ? ? ? 1_555 A U 95 O4 ? ? A A 38 A U 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 39 N1 ? ? ? 1_555 A C 94 N3 ? ? A G 39 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 39 N2 ? ? ? 1_555 A C 94 O2 ? ? A G 39 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 39 O6 ? ? ? 1_555 A C 94 N4 ? ? A G 39 A C 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 40 N3 ? ? ? 1_555 A U 93 O4 ? ? A U 40 A U 93 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog75 hydrog ? ? A U 40 O2 ? ? ? 1_555 A U 93 N3 ? ? A U 40 A U 93 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog76 hydrog ? ? A C 41 N4 ? ? ? 1_555 A G 91 O6 ? ? A C 41 A G 91 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog77 hydrog ? ? A U 42 N3 ? ? ? 1_555 A A 90 N1 ? ? A U 42 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A U 42 O4 ? ? ? 1_555 A A 90 N6 ? ? A U 42 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 43 N6 ? ? ? 1_555 A U 89 O4 ? ? A A 43 A U 89 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog80 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 88 N2 ? ? A C 44 A G 88 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog81 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 87 N3 ? ? A G 45 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 87 O2 ? ? A G 45 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 87 N4 ? ? A G 45 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A U 46 N3 ? ? ? 1_555 A A 86 N1 ? ? A U 46 A A 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A U 46 O4 ? ? ? 1_555 A A 86 N6 ? ? A U 46 A A 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A G 47 N1 ? ? ? 1_555 A A 85 N1 ? ? A G 47 A A 85 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog87 hydrog ? ? A G 48 N2 ? ? ? 1_555 A C 84 O2 ? ? A G 48 A C 84 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog88 hydrog ? ? A A 49 N1 ? ? ? 1_555 A U 83 N3 ? ? A A 49 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A A 49 N6 ? ? ? 1_555 A U 83 O4 ? ? A A 49 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 50 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 50 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 50 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A C 51 N3 ? ? ? 1_555 A G 72 N1 ? ? A C 51 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A C 51 N4 ? ? ? 1_555 A G 72 O6 ? ? A C 51 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A C 51 O2 ? ? ? 1_555 A G 72 N2 ? ? A C 51 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 52 N1 ? ? ? 1_555 A A 71 N1 ? ? A G 52 A A 71 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog97 hydrog ? ? A G 52 O6 ? ? ? 1_555 A A 71 N6 ? ? A G 52 A A 71 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog98 hydrog ? ? A C 54 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 54 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A C 54 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 54 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A C 54 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 54 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A A 55 N1 ? ? ? 1_555 A U 69 N3 ? ? A A 55 A U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A A 55 N6 ? ? ? 1_555 A U 69 O4 ? ? A A 55 A U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A A 56 N1 ? ? ? 1_555 A U 68 N3 ? ? A A 56 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A A 56 N6 ? ? ? 1_555 A U 68 O4 ? ? A A 56 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A A 57 N1 ? ? ? 1_555 A U 67 N3 ? ? A A 57 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A A 57 N6 ? ? ? 1_555 A U 67 O4 ? ? A A 57 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A G 58 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 58 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A G 58 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 58 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A G 58 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 58 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A A 59 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 59 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A A 59 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 59 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A C 60 O2 ? ? ? 1_555 A G 62 N1 ? ? A C 60 A G 62 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog113 hydrog ? ? A C 60 O2 ? ? ? 1_555 A A 63 N6 ? ? A C 60 A A 63 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog114 hydrog ? ? A C 112 N3 ? ? ? 1_555 A G 128 N1 ? ? A C 112 A G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A C 112 N4 ? ? ? 1_555 A G 128 O6 ? ? A C 112 A G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A C 112 O2 ? ? ? 1_555 A G 128 N2 ? ? A C 112 A G 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A A 113 N1 ? ? ? 1_555 A U 127 N3 ? ? A A 113 A U 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? A A 113 N6 ? ? ? 1_555 A U 127 O4 ? ? A A 113 A U 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? A G 114 N1 ? ? ? 1_555 A C 126 N3 ? ? A G 114 A C 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? A G 114 N2 ? ? ? 1_555 A C 126 O2 ? ? A G 114 A C 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? A G 114 O6 ? ? ? 1_555 A C 126 N4 ? ? A G 114 A C 126 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? A G 115 N1 ? ? ? 1_555 A C 125 N3 ? ? A G 115 A C 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? A G 115 N2 ? ? ? 1_555 A C 125 O2 ? ? A G 115 A C 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? A G 115 O6 ? ? ? 1_555 A C 125 N4 ? ? A G 115 A C 125 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? A G 116 N1 ? ? ? 1_555 A C 124 N3 ? ? A G 116 A C 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? A G 116 N2 ? ? ? 1_555 A C 124 O2 ? ? A G 116 A C 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? A G 116 O6 ? ? ? 1_555 A C 124 N4 ? ? A G 116 A C 124 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? A U 117 N3 ? ? ? 1_555 A A 121 N7 ? ? A U 117 A A 121 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog129 hydrog ? ? A U 117 O2 ? ? ? 1_555 A A 121 N6 ? ? A U 117 A A 121 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # _atom_sites.entry_id 7LYF _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.032337 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007270 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.002968 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 U 16 16 16 U U A . n A 1 17 C 17 17 17 C C A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 A 26 26 26 A A A . n A 1 27 G 27 27 27 G G A . n A 1 28 C 28 28 28 C C A . n A 1 29 G 29 29 29 G G A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 G 32 32 32 G G A . n A 1 33 C 33 33 33 C C A . n A 1 34 U 34 34 34 U U A . n A 1 35 G 35 35 35 G G A . n A 1 36 U 36 36 36 U U A . n A 1 37 U 37 37 37 U U A . n A 1 38 A 38 38 38 A A A . n A 1 39 G 39 39 39 G G A . n A 1 40 U 40 40 40 U U A . n A 1 41 C 41 41 41 C C A . n A 1 42 U 42 42 42 U U A . n A 1 43 A 43 43 43 A A A . n A 1 44 C 44 44 44 C C A . n A 1 45 G 45 45 45 G G A . n A 1 46 U 46 46 46 U U A . n A 1 47 G 47 47 47 G G A . n A 1 48 G 48 48 48 G G A . n A 1 49 A 49 49 49 A A A . n A 1 50 C 50 50 50 C C A . n A 1 51 C 51 51 51 C C A . n A 1 52 G 52 52 52 G G A . n A 1 53 A 53 53 53 A A A . n A 1 54 C 54 54 54 C C A . n A 1 55 A 55 55 55 A A A . n A 1 56 A 56 56 56 A A A . n A 1 57 A 57 57 57 A A A . n A 1 58 G 58 58 58 G G A . n A 1 59 A 59 59 59 A A A . n A 1 60 C 60 60 60 C C A . n A 1 61 A 61 61 61 A A A . n A 1 62 G 62 62 62 G G A . n A 1 63 A 63 63 63 A A A . n A 1 64 U 64 64 64 U U A . n A 1 65 U 65 65 65 U U A . n A 1 66 C 66 66 66 C C A . n A 1 67 U 67 67 67 U U A . n A 1 68 U 68 68 68 U U A . n A 1 69 U 69 69 69 U U A . n A 1 70 G 70 70 70 G G A . n A 1 71 A 71 71 71 A A A . n A 1 72 G 72 72 72 G G A . n A 1 73 G 73 73 73 G G A . n A 1 74 G 74 74 74 G G A . n A 1 75 A 75 75 75 A A A . n A 1 76 G 76 76 76 G G A . n A 1 77 C 77 77 77 C C A . n A 1 78 U 78 78 78 U U A . n A 1 79 A 79 79 79 A A A . n A 1 80 A 80 80 80 A A A . n A 1 81 G 81 81 81 G G A . n A 1 82 C 82 82 82 C C A . n A 1 83 U 83 83 83 U U A . n A 1 84 C 84 84 84 C C A . n A 1 85 A 85 85 85 A A A . n A 1 86 A 86 86 86 A A A . n A 1 87 C 87 87 87 C C A . n A 1 88 G 88 88 88 G G A . n A 1 89 U 89 89 89 U U A . n A 1 90 A 90 90 90 A A A . n A 1 91 G 91 91 91 G G A . n A 1 92 U 92 92 92 U U A . n A 1 93 U 93 93 93 U U A . n A 1 94 C 94 94 94 C C A . n A 1 95 U 95 95 95 U U A . n A 1 96 A 96 96 96 A A A . n A 1 97 A 97 97 97 A A A . n A 1 98 C 98 98 98 C C A . n A 1 99 A 99 99 99 A A A . n A 1 100 G 100 100 100 G G A . n A 1 101 C 101 101 101 C C A . n A 1 102 U 102 102 102 U U A . n A 1 103 C 103 103 103 C C A . n A 1 104 C 104 104 104 C C A . n A 1 105 G 105 105 105 G G A . n A 1 106 C 106 106 106 C C A . n A 1 107 G 107 107 107 G G A . n A 1 108 G 108 108 108 G G A . n A 1 109 G 109 109 109 G G A . n A 1 110 U 110 110 110 U U A . n A 1 111 C 111 111 111 C C A . n A 1 112 C 112 112 112 C C A . n A 1 113 A 113 113 113 A A A . n A 1 114 G 114 114 114 G G A . n A 1 115 G 115 115 115 G G A . n A 1 116 G 116 116 116 G G A . n A 1 117 U 117 117 117 U U A . n A 1 118 U 118 118 118 U U A . n A 1 119 C 119 119 119 C C A . n A 1 120 A 120 120 120 A A A . n A 1 121 A 121 121 121 A A A . n A 1 122 G 122 122 122 G G A . n A 1 123 U 123 123 123 U U A . n A 1 124 C 124 124 124 C C A . n A 1 125 C 125 125 125 C C A . n A 1 126 C 126 126 126 C C A . n A 1 127 U 127 127 127 U U A . n A 1 128 G 128 128 128 G G A . n A 1 129 U 129 129 129 U U A . n A 1 130 U 130 130 130 U U A . n A 1 131 C 131 131 131 C C A . n A 1 132 G 132 132 132 G G A . n A 1 133 G 133 133 133 G G A . n A 1 134 G 134 134 134 G G A . n A 1 135 C 135 135 135 C C A . n A 1 136 G 136 136 136 G G A . n A 1 137 C 137 137 137 C C A . n A 1 138 C 138 138 138 C C A . n A 1 139 A 139 139 139 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 1 MG MG A . C 3 HOH 1 301 7 HOH HOH A . C 3 HOH 2 302 1 HOH HOH A . C 3 HOH 3 303 2 HOH HOH A . C 3 HOH 4 304 6 HOH HOH A . C 3 HOH 5 305 5 HOH HOH A . C 3 HOH 6 306 3 HOH HOH A . C 3 HOH 7 307 4 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O6 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id A _pdbx_struct_conn_angle.ptnr1_label_comp_id G _pdbx_struct_conn_angle.ptnr1_label_seq_id 5 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id G _pdbx_struct_conn_angle.ptnr1_auth_seq_id 5 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id B _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 201 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id O4 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id U _pdbx_struct_conn_angle.ptnr3_label_seq_id 130 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id U _pdbx_struct_conn_angle.ptnr3_auth_seq_id 130 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 106.7 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-05-12 2 'Structure model' 1 1 2021-05-19 3 'Structure model' 1 2 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 3 'Structure model' '_database_2.pdbx_DOI' 7 3 'Structure model' '_database_2.pdbx_database_accession' # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data reduction' ? ? 'Zbyszek Otwinowski' hkl@hkl-xray.com ? ? ? ? ? http://www.hkl-xray.com/ ? HKL-2000 ? ? package . 2 ? 'data scaling' ? ? 'Zbyszek Otwinowski' hkl@hkl-xray.com ? ? ? ? ? http://www.hkl-xray.com/ ? HKL-2000 ? ? package . 3 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 4 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'Oct. 31, 2020' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.27 5 # _pdbx_entry_details.entry_id 7LYF _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 C _pdbx_validate_symm_contact.auth_seq_id_1 106 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "O3'" _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 A _pdbx_validate_symm_contact.auth_seq_id_2 139 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_595 _pdbx_validate_symm_contact.dist 2.08 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.486 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.121 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 124.37 118.90 5.47 0.60 N 2 1 N3 A C 17 ? ? C2 A C 17 ? ? O2 A C 17 ? ? 117.47 121.90 -4.43 0.70 N 3 1 C2 A C 17 ? ? N1 A C 17 ? ? "C1'" A C 17 ? ? 127.08 118.80 8.28 1.10 N 4 1 C4 A G 19 ? ? C5 A G 19 ? ? N7 A G 19 ? ? 108.16 110.80 -2.64 0.40 N 5 1 N9 A G 19 ? ? C4 A G 19 ? ? C5 A G 19 ? ? 107.84 105.40 2.44 0.40 N 6 1 N1 A G 19 ? ? C6 A G 19 ? ? O6 A G 19 ? ? 115.94 119.90 -3.96 0.60 N 7 1 "O4'" A G 22 ? ? "C1'" A G 22 ? ? N9 A G 22 ? ? 113.42 108.50 4.92 0.70 N 8 1 C6 A C 51 ? ? N1 A C 51 ? ? C2 A C 51 ? ? 117.63 120.30 -2.67 0.40 N 9 1 C5 A C 51 ? ? C6 A C 51 ? ? N1 A C 51 ? ? 124.24 121.00 3.24 0.50 N 10 1 C5 A A 57 ? ? C6 A A 57 ? ? N1 A A 57 ? ? 120.97 117.70 3.27 0.50 N 11 1 C8 A A 59 ? ? N9 A A 59 ? ? C4 A A 59 ? ? 102.94 105.80 -2.86 0.40 N 12 1 "O4'" A A 61 ? ? "C1'" A A 61 ? ? N9 A A 61 ? ? 103.40 108.20 -4.80 0.80 N 13 1 C8 A A 61 ? ? N9 A A 61 ? ? C4 A A 61 ? ? 109.22 105.80 3.42 0.40 N 14 1 C6 A C 101 ? ? N1 A C 101 ? ? C2 A C 101 ? ? 117.53 120.30 -2.77 0.40 N 15 1 C2 A C 101 ? ? N1 A C 101 ? ? "C1'" A C 101 ? ? 126.49 118.80 7.69 1.10 N 16 1 C8 A G 107 ? ? N9 A G 107 ? ? C4 A G 107 ? ? 109.10 106.40 2.70 0.40 N 17 1 C2 A G 108 ? ? N3 A G 108 ? ? C4 A G 108 ? ? 108.46 111.90 -3.44 0.50 N 18 1 N3 A G 108 ? ? C4 A G 108 ? ? C5 A G 108 ? ? 133.35 128.60 4.75 0.50 N 19 1 C8 A G 108 ? ? N9 A G 108 ? ? C4 A G 108 ? ? 109.01 106.40 2.61 0.40 N 20 1 N3 A G 108 ? ? C4 A G 108 ? ? N9 A G 108 ? ? 121.94 126.00 -4.06 0.60 N 21 1 C4 A G 108 ? ? N9 A G 108 ? ? "C1'" A G 108 ? ? 118.14 126.50 -8.36 1.30 N 22 1 N3 A G 128 ? ? C4 A G 128 ? ? C5 A G 128 ? ? 124.55 128.60 -4.05 0.50 N 23 1 C8 A G 128 ? ? N9 A G 128 ? ? C4 A G 128 ? ? 103.44 106.40 -2.96 0.40 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 MG MG MG N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7LYF 'double helix' 7LYF 'a-form double helix' 7LYF 'parallel strands' 7LYF 'hairpin loop' 7LYF 'bulge loop' 7LYF 'mismatched base pair' 7LYF 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 135 1_555 -0.228 -0.129 -0.612 -2.904 -3.487 2.307 1 A_G1:C135_A A 1 ? A 135 ? 19 1 1 A C 2 1_555 A G 134 1_555 0.214 -0.181 -0.258 4.351 0.247 -4.825 2 A_C2:G134_A A 2 ? A 134 ? 19 1 1 A C 3 1_555 A G 133 1_555 0.016 -0.159 0.135 3.175 -6.115 -3.144 3 A_C3:G133_A A 3 ? A 133 ? 19 1 1 A C 4 1_555 A G 132 1_555 0.048 -0.267 -0.023 0.940 -12.053 -4.446 4 A_C4:G132_A A 4 ? A 132 ? 19 1 1 A G 5 1_555 A C 131 1_555 0.871 0.271 0.528 9.776 -15.029 -5.232 5 A_G5:C131_A A 5 ? A 131 ? 19 1 1 A G 6 1_555 A U 130 1_555 -1.427 -0.446 0.366 -0.210 -8.342 -18.514 6 A_G6:U130_A A 6 ? A 130 ? 28 1 1 A A 7 1_555 A U 129 1_555 -1.088 0.323 0.168 8.458 -11.086 0.746 7 A_A7:U129_A A 7 ? A 129 ? 20 1 1 A C 112 1_555 A G 128 1_555 -0.003 -0.041 0.135 -0.685 0.760 -5.008 8 A_C112:G128_A A 112 ? A 128 ? 19 1 1 A A 113 1_555 A U 127 1_555 -1.840 -0.084 0.495 -4.252 8.389 5.167 9 A_A113:U127_A A 113 ? A 127 ? 20 1 1 A G 114 1_555 A C 126 1_555 1.503 0.200 0.307 -4.230 2.786 -8.713 10 A_G114:C126_A A 114 ? A 126 ? 19 1 1 A G 115 1_555 A C 125 1_555 -0.133 -0.107 0.289 -3.999 4.358 1.012 11 A_G115:C125_A A 115 ? A 125 ? 19 1 1 A G 116 1_555 A C 124 1_555 -0.194 0.003 0.126 -12.073 -0.830 3.054 12 A_G116:C124_A A 116 ? A 124 ? 19 1 1 A U 117 1_555 A A 121 1_555 4.091 -1.697 1.068 -2.474 14.318 -93.903 13 A_U117:A121_A A 117 ? A 121 ? 24 4 1 A U 118 1_555 A G 18 1_555 0.132 -5.325 1.051 18.680 17.840 -106.186 14 A_U118:G18_A A 118 ? A 18 ? ? 6 1 A U 83 1_555 A A 49 1_555 -0.084 0.570 0.206 -7.754 -2.383 -2.005 15 A_U83:A49_A A 83 ? A 49 ? 20 1 1 A C 84 1_555 A G 48 1_555 0.003 0.859 0.007 3.107 -3.653 1.906 16 A_C84:G48_A A 84 ? A 48 ? ? ? 1 A A 85 1_555 A G 47 1_555 1.127 2.217 0.480 -3.459 -15.780 23.353 17 A_A85:G47_A A 85 ? A 47 ? ? ? 1 A A 86 1_555 A U 46 1_555 0.289 0.093 0.337 -4.574 -10.578 11.946 18 A_A86:U46_A A 86 ? A 46 ? 20 1 1 A C 87 1_555 A G 45 1_555 0.323 0.164 -0.012 -1.919 -5.568 5.232 19 A_C87:G45_A A 87 ? A 45 ? 19 1 1 A G 88 1_555 A C 44 1_555 1.397 0.575 0.470 -10.419 -14.794 11.582 20 A_G88:C44_A A 88 ? A 44 ? ? 1 1 A U 89 1_555 A A 43 1_555 2.050 -0.194 0.084 6.118 -10.905 -11.539 21 A_U89:A43_A A 89 ? A 43 ? ? ? 1 A A 90 1_555 A U 42 1_555 0.291 -0.017 0.517 4.482 -4.818 -13.037 22 A_A90:U42_A A 90 ? A 42 ? 20 1 1 A G 91 1_555 A C 41 1_555 0.318 -2.788 -0.791 26.527 -9.376 103.853 23 A_G91:C41_A A 91 ? A 41 ? ? ? 1 A U 93 1_555 A U 40 1_555 -0.529 -1.643 0.791 -12.826 -19.323 16.210 24 A_U93:U40_A A 93 ? A 40 ? 16 1 1 A C 94 1_555 A G 39 1_555 0.152 -0.107 -0.365 -2.398 -4.932 1.114 25 A_C94:G39_A A 94 ? A 39 ? 19 1 1 A U 95 1_555 A A 38 1_555 -0.035 0.021 -0.360 2.232 -3.028 0.328 26 A_U95:A38_A A 95 ? A 38 ? 20 1 1 A A 96 1_555 A U 37 1_555 -0.034 -0.113 -0.098 -1.821 -1.116 5.504 27 A_A96:U37_A A 96 ? A 37 ? 20 1 1 A A 97 1_555 A U 36 1_555 -0.250 0.249 -0.515 6.425 1.429 -1.303 28 A_A97:U36_A A 97 ? A 36 ? 20 1 1 A C 98 1_555 A G 35 1_555 -0.411 0.595 -0.662 10.439 5.979 11.048 29 A_C98:G35_A A 98 ? A 35 ? ? 1 1 A A 99 1_555 A U 34 1_555 1.215 0.495 -1.200 -28.324 -13.398 9.800 30 A_A99:U34_A A 99 ? A 34 ? ? ? 1 A G 100 1_555 A C 33 1_555 1.111 0.463 -0.820 -16.464 -1.233 2.949 31 A_G100:C33_A A 100 ? A 33 ? 19 1 1 A C 101 1_555 A G 32 1_555 0.044 -0.120 0.101 -0.209 -1.476 0.254 32 A_C101:G32_A A 101 ? A 32 ? 19 1 1 A U 102 1_555 A A 31 1_555 -0.025 0.128 0.217 4.403 -8.903 11.440 33 A_U102:A31_A A 102 ? A 31 ? 20 1 1 A C 103 1_555 A G 30 1_555 0.126 -0.138 -0.515 4.965 -11.322 6.461 34 A_C103:G30_A A 103 ? A 30 ? 19 1 1 A C 104 1_555 A G 29 1_555 0.211 0.132 0.050 0.883 -15.962 7.559 35 A_C104:G29_A A 104 ? A 29 ? 19 1 1 A G 105 1_555 A C 28 1_555 1.339 0.496 0.373 -6.709 -19.660 15.367 36 A_G105:C28_A A 105 ? A 28 ? ? 1 1 A C 106 1_555 A G 27 1_555 0.203 -0.150 0.642 -7.867 -12.279 -1.734 37 A_C106:G27_A A 106 ? A 27 ? 19 1 1 A G 107 1_555 A A 26 1_555 -0.641 3.266 0.521 -19.159 -10.840 -54.253 38 A_G107:A26_A A 107 ? A 26 ? ? ? 1 A G 10 1_555 A C 25 1_555 3.412 0.179 -0.177 -12.205 11.492 -23.008 39 A_G10:C25_A A 10 ? A 25 ? ? 1 1 A C 11 1_555 A G 24 1_555 0.155 -0.012 -0.053 -10.895 -1.949 3.024 40 A_C11:G24_A A 11 ? A 24 ? 19 1 1 A U 12 1_555 A A 23 1_555 -0.255 0.080 -0.105 1.687 0.437 -4.838 41 A_U12:A23_A A 12 ? A 23 ? 20 1 1 A C 13 1_555 A G 22 1_555 0.563 0.234 -0.531 -0.844 -5.581 1.496 42 A_C13:G22_A A 13 ? A 22 ? 19 1 1 A A 14 1_555 A U 8 1_555 -3.852 -1.917 -0.225 6.551 2.734 -99.824 43 A_A14:U8_A A 14 ? A 8 ? 24 4 1 A G 15 1_555 A C 111 1_555 -0.054 2.744 0.155 3.639 3.276 154.242 44 A_G15:C111_A A 15 ? A 111 ? 22 2 1 A G 19 1_555 A C 119 1_555 -0.130 -0.040 0.155 -13.416 -12.000 2.128 45 A_G19:C119_A A 19 ? A 119 ? 19 1 1 A C 50 1_555 A G 73 1_555 -0.885 0.096 -1.167 25.143 5.903 -0.204 46 A_C50:G73_A A 50 ? A 73 ? 19 1 1 A C 51 1_555 A G 72 1_555 0.064 -0.209 0.746 -2.592 -2.158 0.846 47 A_C51:G72_A A 51 ? A 72 ? 19 1 1 A G 52 1_555 A A 71 1_555 1.252 1.400 0.100 13.661 -0.699 -9.393 48 A_G52:A71_A A 52 ? A 71 ? 8 1 1 A C 54 1_555 A G 70 1_555 0.135 -0.139 -0.483 3.790 -6.311 3.860 49 A_C54:G70_A A 54 ? A 70 ? 19 1 1 A A 55 1_555 A U 69 1_555 -0.247 -0.086 -0.073 -5.040 2.216 6.859 50 A_A55:U69_A A 55 ? A 69 ? 20 1 1 A A 56 1_555 A U 68 1_555 0.242 -0.064 0.125 3.196 -2.677 -0.664 51 A_A56:U68_A A 56 ? A 68 ? 20 1 1 A A 57 1_555 A U 67 1_555 0.068 -0.006 -0.149 4.535 -6.256 -2.608 52 A_A57:U67_A A 57 ? A 67 ? 20 1 1 A G 58 1_555 A C 66 1_555 0.735 0.427 -0.671 -8.405 -4.613 1.927 53 A_G58:C66_A A 58 ? A 66 ? 19 1 1 A A 59 1_555 A U 65 1_555 -0.050 0.002 0.869 -7.975 13.079 5.560 54 A_A59:U65_A A 59 ? A 65 ? 20 1 1 A C 60 1_555 A G 62 1_555 0.805 -1.008 -2.332 0.185 22.471 -74.313 55 A_C60:G62_A A 60 ? A 62 ? ? 5 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 135 1_555 A C 2 1_555 A G 134 1_555 -1.193 -1.918 2.966 -6.341 3.564 35.332 -3.559 1.108 2.928 5.797 10.313 36.050 1 AA_G1C2:G134C135_AA A 1 ? A 135 ? A 2 ? A 134 ? 1 A C 2 1_555 A G 134 1_555 A C 3 1_555 A G 133 1_555 -0.150 -1.685 3.365 -4.537 6.095 34.293 -3.697 -0.423 3.025 10.183 7.579 35.100 2 AA_C2C3:G133G134_AA A 2 ? A 134 ? A 3 ? A 133 ? 1 A C 3 1_555 A G 133 1_555 A C 4 1_555 A G 132 1_555 -0.786 -1.538 3.404 -0.809 6.575 30.452 -4.113 1.311 3.033 12.336 1.518 31.147 3 AA_C3C4:G132G133_AA A 3 ? A 133 ? A 4 ? A 132 ? 1 A C 4 1_555 A G 132 1_555 A G 5 1_555 A C 131 1_555 -0.081 -2.582 3.131 -0.644 -1.272 28.196 -5.005 0.020 3.243 -2.609 1.321 28.231 4 AA_C4G5:C131G132_AA A 4 ? A 132 ? A 5 ? A 131 ? 1 A G 5 1_555 A C 131 1_555 A G 6 1_555 A U 130 1_555 0.014 -2.349 3.125 2.306 11.149 29.059 -6.132 0.338 2.097 21.221 -4.388 31.165 5 AA_G5G6:U130C131_AA A 5 ? A 131 ? A 6 ? A 130 ? 1 A G 6 1_555 A U 130 1_555 A A 7 1_555 A U 129 1_555 0.525 -0.951 3.065 4.770 8.550 34.594 -2.661 -0.227 2.804 14.033 -7.830 35.912 6 AA_G6A7:U129U130_AA A 6 ? A 130 ? A 7 ? A 129 ? 1 A A 7 1_555 A U 129 1_555 A C 112 1_555 A G 128 1_555 0.296 -2.116 3.560 5.768 4.426 40.587 -3.514 0.240 3.331 6.320 -8.235 41.206 7 AA_A7C112:G128U129_AA A 7 ? A 129 ? A 112 ? A 128 ? 1 A C 112 1_555 A G 128 1_555 A A 113 1_555 A U 127 1_555 0.229 -1.764 2.943 -6.160 8.169 20.834 -6.632 -2.261 1.973 21.030 15.858 23.186 8 AA_C112A113:U127G128_AA A 112 ? A 128 ? A 113 ? A 127 ? 1 A A 113 1_555 A U 127 1_555 A G 114 1_555 A C 126 1_555 -0.627 -2.316 3.179 3.745 2.670 42.323 -3.446 1.220 2.971 3.685 -5.168 42.561 9 AA_A113G114:C126U127_AA A 113 ? A 127 ? A 114 ? A 126 ? 1 A G 114 1_555 A C 126 1_555 A G 115 1_555 A C 125 1_555 0.876 -2.428 2.894 3.342 9.671 26.359 -6.716 -1.195 1.989 20.262 -7.003 28.243 10 AA_G114G115:C125C126_AA A 114 ? A 126 ? A 115 ? A 125 ? 1 A G 115 1_555 A C 125 1_555 A G 116 1_555 A C 124 1_555 0.667 -2.313 3.243 4.237 4.812 35.157 -4.437 -0.501 2.968 7.886 -6.943 35.718 11 AA_G115G116:C124C125_AA A 115 ? A 125 ? A 116 ? A 124 ? 1 A G 116 1_555 A C 124 1_555 A U 117 1_555 A A 121 1_555 -2.492 -1.956 3.198 -2.964 -0.142 87.139 -1.416 1.744 3.268 -0.103 2.150 87.179 12 AA_G116U117:A121C124_AA A 116 ? A 124 ? A 117 ? A 121 ? 1 A U 117 1_555 A A 121 1_555 A U 118 1_555 A G 18 1_555 1.343 -1.552 3.404 7.416 1.854 39.578 -2.477 -1.055 3.516 2.708 -10.830 40.280 13 AA_U117U118:G18A121_AA A 117 ? A 121 ? A 118 ? A 18 ? 1 A U 83 1_555 A A 49 1_555 A C 84 1_555 A G 48 1_555 0.426 -1.377 3.181 -1.266 6.861 31.855 -3.561 -0.963 2.813 12.317 2.272 32.591 14 AA_U83C84:G48A49_AA A 83 ? A 49 ? A 84 ? A 48 ? 1 A C 84 1_555 A G 48 1_555 A A 85 1_555 A G 47 1_555 1.194 -1.617 3.261 4.672 12.437 27.281 -5.418 -1.413 2.473 24.604 -9.241 30.289 15 AA_C84A85:G47G48_AA A 84 ? A 48 ? A 85 ? A 47 ? 1 A A 85 1_555 A G 47 1_555 A A 86 1_555 A U 46 1_555 -0.896 -1.141 3.061 -4.712 10.424 31.452 -3.542 0.855 2.662 18.481 8.354 33.418 16 AA_A85A86:U46G47_AA A 85 ? A 47 ? A 86 ? A 46 ? 1 A A 86 1_555 A U 46 1_555 A C 87 1_555 A G 45 1_555 -0.121 -1.665 3.075 3.965 2.751 32.054 -3.428 0.857 2.891 4.946 -7.130 32.406 17 AA_A86C87:G45U46_AA A 86 ? A 46 ? A 87 ? A 45 ? 1 A C 87 1_555 A G 45 1_555 A G 88 1_555 A C 44 1_555 0.215 -1.287 3.412 2.626 10.646 31.382 -4.012 0.058 2.845 18.971 -4.680 33.197 18 AA_C87G88:C44G45_AA A 87 ? A 45 ? A 88 ? A 44 ? 1 A G 88 1_555 A C 44 1_555 A U 89 1_555 A A 43 1_555 -1.046 -0.862 2.995 0.680 3.637 37.635 -1.752 1.693 2.883 5.622 -1.051 37.810 19 AA_G88U89:A43C44_AA A 88 ? A 44 ? A 89 ? A 43 ? 1 A U 89 1_555 A A 43 1_555 A A 90 1_555 A U 42 1_555 -0.060 -2.075 2.988 -2.365 21.399 22.183 -6.698 -0.195 0.745 44.392 4.906 30.819 20 AA_U89A90:U42A43_AA A 89 ? A 43 ? A 90 ? A 42 ? 1 A A 90 1_555 A U 42 1_555 A G 91 1_555 A C 41 1_555 -0.527 -3.285 -1.267 -169.620 20.833 178.001 -1.641 0.275 -1.265 10.417 84.811 179.841 21 AA_A90G91:C41U42_AA A 90 ? A 42 ? A 91 ? A 41 ? 1 A G 91 1_555 A C 41 1_555 A U 93 1_555 A U 40 1_555 -2.418 -2.504 -2.813 119.675 -122.673 -7.012 0.213 -2.230 -0.276 64.233 62.663 -171.395 22 AA_G91U93:U40C41_AA A 91 ? A 41 ? A 93 ? A 40 ? 1 A U 93 1_555 A U 40 1_555 A C 94 1_555 A G 39 1_555 -1.115 -1.813 2.858 6.534 3.921 36.027 -3.308 2.491 2.422 6.254 -10.421 36.798 23 AA_U93C94:G39U40_AA A 93 ? A 40 ? A 94 ? A 39 ? 1 A C 94 1_555 A G 39 1_555 A U 95 1_555 A A 38 1_555 -0.058 -1.668 3.503 1.061 3.947 28.531 -4.265 0.363 3.243 7.956 -2.139 28.816 24 AA_C94U95:A38G39_AA A 94 ? A 39 ? A 95 ? A 38 ? 1 A U 95 1_555 A A 38 1_555 A A 96 1_555 A U 37 1_555 0.593 -1.099 3.433 -1.868 18.216 34.049 -3.855 -1.123 2.514 28.682 2.941 38.532 25 AA_U95A96:U37A38_AA A 95 ? A 38 ? A 96 ? A 37 ? 1 A A 96 1_555 A U 37 1_555 A A 97 1_555 A U 36 1_555 -0.553 -0.839 3.376 3.352 2.534 30.770 -2.061 1.686 3.221 4.748 -6.280 31.049 26 AA_A96A97:U36U37_AA A 96 ? A 37 ? A 97 ? A 36 ? 1 A A 97 1_555 A U 36 1_555 A C 98 1_555 A G 35 1_555 1.590 -1.607 3.441 3.077 -0.750 29.884 -2.933 -2.384 3.621 -1.448 -5.945 30.048 27 AA_A97C98:G35U36_AA A 97 ? A 36 ? A 98 ? A 35 ? 1 A C 98 1_555 A G 35 1_555 A A 99 1_555 A U 34 1_555 0.426 -1.038 4.341 8.467 27.617 39.661 -3.942 0.306 3.077 35.573 -10.906 48.720 28 AA_C98A99:U34G35_AA A 98 ? A 35 ? A 99 ? A 34 ? 1 A A 99 1_555 A U 34 1_555 A G 100 1_555 A C 33 1_555 -0.468 -1.518 2.961 -1.905 6.670 27.270 -4.464 0.581 2.551 13.865 3.960 28.122 29 AA_A99G100:C33U34_AA A 99 ? A 34 ? A 100 ? A 33 ? 1 A G 100 1_555 A C 33 1_555 A C 101 1_555 A G 32 1_555 -0.523 -1.950 2.752 -7.783 3.319 18.928 -6.610 -1.332 2.402 9.501 22.281 20.718 30 AA_G100C101:G32C33_AA A 100 ? A 33 ? A 101 ? A 32 ? 1 A C 101 1_555 A G 32 1_555 A U 102 1_555 A A 31 1_555 0.635 -1.090 2.960 -1.821 8.953 32.448 -3.132 -1.350 2.540 15.638 3.181 33.677 31 AA_C101U102:A31G32_AA A 101 ? A 32 ? A 102 ? A 31 ? 1 A U 102 1_555 A A 31 1_555 A C 103 1_555 A G 30 1_555 -0.756 -1.376 3.060 0.508 9.755 29.857 -4.139 1.480 2.485 18.325 -0.953 31.379 32 AA_U102C103:G30A31_AA A 102 ? A 31 ? A 103 ? A 30 ? 1 A C 103 1_555 A G 30 1_555 A C 104 1_555 A G 29 1_555 0.644 -1.209 3.283 -2.027 9.019 34.392 -3.231 -1.335 2.844 14.921 3.353 35.576 33 AA_C103C104:G29G30_AA A 103 ? A 30 ? A 104 ? A 29 ? 1 A C 104 1_555 A G 29 1_555 A G 105 1_555 A C 28 1_555 0.091 -1.145 3.386 2.757 11.018 36.686 -3.107 0.202 2.933 17.012 -4.256 38.346 34 AA_C104G105:C28G29_AA A 104 ? A 29 ? A 105 ? A 28 ? 1 A G 105 1_555 A C 28 1_555 A C 106 1_555 A G 27 1_555 -0.408 -1.398 3.307 0.785 5.011 24.183 -4.743 1.184 2.947 11.796 -1.848 24.701 35 AA_G105C106:G27C28_AA A 105 ? A 28 ? A 106 ? A 27 ? 1 A C 106 1_555 A G 27 1_555 A G 107 1_555 A A 26 1_555 -3.238 -1.511 3.654 5.006 0.550 31.499 -2.855 6.838 3.089 1.005 -9.149 31.889 36 AA_C106G107:A26G27_AA A 106 ? A 27 ? A 107 ? A 26 ? 1 A G 107 1_555 A A 26 1_555 A G 10 1_555 A C 25 1_555 -3.455 -4.411 3.093 14.541 0.561 84.134 -3.271 2.845 2.559 0.416 -10.781 85.151 37 AA_G107G10:C25A26_AA A 107 ? A 26 ? A 10 ? A 25 ? 1 A G 10 1_555 A C 25 1_555 A C 11 1_555 A G 24 1_555 0.940 -1.533 3.264 1.479 7.444 17.842 -7.948 -2.118 2.495 22.712 -4.514 19.377 38 AA_G10C11:G24C25_AA A 10 ? A 25 ? A 11 ? A 24 ? 1 A C 11 1_555 A G 24 1_555 A U 12 1_555 A A 23 1_555 -0.028 -0.978 2.956 1.669 6.976 33.101 -2.662 0.283 2.696 12.069 -2.888 33.848 39 AA_C11U12:A23G24_AA A 11 ? A 24 ? A 12 ? A 23 ? 1 A U 12 1_555 A A 23 1_555 A C 13 1_555 A G 22 1_555 1.950 -1.244 3.352 10.126 4.116 30.840 -2.992 -1.544 3.605 7.452 -18.334 32.675 40 AA_U12C13:G22A23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A C 13 1_555 A G 22 1_555 A A 14 1_555 A U 8 1_555 -2.107 -0.674 3.460 -3.520 5.029 61.427 -0.908 1.879 3.505 4.910 3.437 61.703 41 AA_C13A14:U8G22_AA A 13 ? A 22 ? A 14 ? A 8 ? 1 A A 14 1_555 A U 8 1_555 A G 15 1_555 A C 111 1_555 2.196 -3.414 3.216 -2.005 5.062 -72.558 2.710 1.785 3.467 -4.272 -1.692 -72.734 42 AA_A14G15:C111U8_AA A 14 ? A 8 ? A 15 ? A 111 ? 1 A C 50 1_555 A G 73 1_555 A C 51 1_555 A G 72 1_555 -0.362 -2.024 4.074 -16.442 6.708 32.936 -4.250 -2.093 3.413 10.901 26.719 37.300 43 AA_C50C51:G72G73_AA A 50 ? A 73 ? A 51 ? A 72 ? 1 A C 51 1_555 A G 72 1_555 A G 52 1_555 A A 71 1_555 -0.796 -0.588 2.865 5.606 7.474 31.285 -2.134 2.232 2.486 13.488 -10.116 32.617 44 AA_C51G52:A71G72_AA A 51 ? A 72 ? A 52 ? A 71 ? 1 A G 52 1_555 A A 71 1_555 A C 54 1_555 A G 70 1_555 -0.338 -1.396 3.378 2.658 7.353 46.565 -2.345 0.639 3.113 9.224 -3.334 47.181 45 AA_G52C54:G70A71_AA A 52 ? A 71 ? A 54 ? A 70 ? 1 A C 54 1_555 A G 70 1_555 A A 55 1_555 A U 69 1_555 -0.520 -1.754 3.578 -4.148 7.064 27.838 -5.126 0.085 3.092 14.296 8.395 28.996 46 AA_C54A55:U69G70_AA A 54 ? A 70 ? A 55 ? A 69 ? 1 A A 55 1_555 A U 69 1_555 A A 56 1_555 A U 68 1_555 -0.424 -1.404 3.146 -1.305 7.592 34.164 -3.386 0.524 2.794 12.723 2.186 34.997 47 AA_A55A56:U68U69_AA A 55 ? A 69 ? A 56 ? A 68 ? 1 A A 56 1_555 A U 68 1_555 A A 57 1_555 A U 67 1_555 0.382 -1.353 3.278 4.047 8.162 30.344 -3.925 0.016 2.853 15.169 -7.522 31.651 48 AA_A56A57:U67U68_AA A 56 ? A 68 ? A 57 ? A 67 ? 1 A A 57 1_555 A U 67 1_555 A G 58 1_555 A C 66 1_555 0.829 -1.657 3.644 7.148 8.080 34.167 -3.959 -0.233 3.282 13.345 -11.807 35.781 49 AA_A57G58:C66U67_AA A 57 ? A 67 ? A 58 ? A 66 ? 1 A G 58 1_555 A C 66 1_555 A A 59 1_555 A U 65 1_555 0.629 -2.469 3.017 -10.241 0.713 25.572 -5.343 -3.525 2.514 1.534 22.038 27.524 50 AA_G58A59:U65C66_AA A 58 ? A 66 ? A 59 ? A 65 ? 1 A A 59 1_555 A U 65 1_555 A C 60 1_555 A G 62 1_555 0.715 -1.749 4.992 6.030 8.583 87.006 -1.545 -0.320 4.871 6.215 -4.366 87.510 51 AA_A59C60:G62U65_AA A 59 ? A 65 ? A 60 ? A 62 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _pdbx_initial_refinement_model.id _pdbx_initial_refinement_model.entity_id_list _pdbx_initial_refinement_model.type _pdbx_initial_refinement_model.source_name _pdbx_initial_refinement_model.accession_code _pdbx_initial_refinement_model.details 1 ? 'experimental model' PDB 1TN1 1TN1,5EW4 2 ? 'experimental model' PDB 5EW4 1TN1,5EW4 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #