data_7LYG # _entry.id 7LYG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7LYG pdb_00007lyg 10.2210/pdb7lyg/pdb WWPDB D_1000255200 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7LYG _pdbx_database_status.recvd_initial_deposition_date 2021-03-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Lee, E.H.' 1 ? 'Choi, K.H.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 12 _citation.language ? _citation.page_first 2530 _citation.page_last 2530 _citation.title 'Structures of flavivirus RNA promoters suggest two binding modes with NS5 polymerase.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-021-22846-1 _citation.pdbx_database_id_PubMed 33953197 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lee, E.' 1 ? primary 'Bujalowski, P.J.' 2 ? primary 'Teramoto, T.' 3 ? primary 'Gottipati, K.' 4 ? primary 'Scott, S.D.' 5 ? primary 'Padmanabhan, R.' 6 ? primary 'Choi, K.H.' 7 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7LYG _cell.details ? _cell.formula_units_Z ? _cell.length_a 157.073 _cell.length_a_esd ? _cell.length_b 156.588 _cell.length_b_esd ? _cell.length_c 72.325 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7LYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'RNA promoter stem-loop A fused with tRNA' _entity.formula_weight 45874.219 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ;Residues 1-34 and 103-142 form the tRNA scaffold, whereas residues 35-102 match to residues 8-75 of the Zika virus complete genome GB:1070088724 ; _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GCCCGGAUAGCUCAGUCGGUAGAGCAGCGGUAGCUGUUGAUCUGUGUGAAUCAGACUGCGACAGUUCGAGUUUGAAGCGA AAGCUAGCAACAGUAUCAACAGCUACCGCGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GCCCGGAUAGCUCAGUCGGUAGAGCAGCGGUAGCUGUUGAUCUGUGUGAAUCAGACUGCGACAGUUCGAGUUUGAAGCGA AAGCUAGCAACAGUAUCAACAGCUACCGCGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 C n 1 4 C n 1 5 G n 1 6 G n 1 7 A n 1 8 U n 1 9 A n 1 10 G n 1 11 C n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 U n 1 17 C n 1 18 G n 1 19 G n 1 20 U n 1 21 A n 1 22 G n 1 23 A n 1 24 G n 1 25 C n 1 26 A n 1 27 G n 1 28 C n 1 29 G n 1 30 G n 1 31 U n 1 32 A n 1 33 G n 1 34 C n 1 35 U n 1 36 G n 1 37 U n 1 38 U n 1 39 G n 1 40 A n 1 41 U n 1 42 C n 1 43 U n 1 44 G n 1 45 U n 1 46 G n 1 47 U n 1 48 G n 1 49 A n 1 50 A n 1 51 U n 1 52 C n 1 53 A n 1 54 G n 1 55 A n 1 56 C n 1 57 U n 1 58 G n 1 59 C n 1 60 G n 1 61 A n 1 62 C n 1 63 A n 1 64 G n 1 65 U n 1 66 U n 1 67 C n 1 68 G n 1 69 A n 1 70 G n 1 71 U n 1 72 U n 1 73 U n 1 74 G n 1 75 A n 1 76 A n 1 77 G n 1 78 C n 1 79 G n 1 80 A n 1 81 A n 1 82 A n 1 83 G n 1 84 C n 1 85 U n 1 86 A n 1 87 G n 1 88 C n 1 89 A n 1 90 A n 1 91 C n 1 92 A n 1 93 G n 1 94 U n 1 95 A n 1 96 U n 1 97 C n 1 98 A n 1 99 A n 1 100 C n 1 101 A n 1 102 G n 1 103 C n 1 104 U n 1 105 A n 1 106 C n 1 107 C n 1 108 G n 1 109 C n 1 110 G n 1 111 G n 1 112 G n 1 113 U n 1 114 C n 1 115 C n 1 116 A n 1 117 G n 1 118 G n 1 119 G n 1 120 U n 1 121 U n 1 122 C n 1 123 A n 1 124 A n 1 125 G n 1 126 U n 1 127 C n 1 128 C n 1 129 C n 1 130 U n 1 131 G n 1 132 U n 1 133 U n 1 134 C n 1 135 G n 1 136 G n 1 137 G n 1 138 C n 1 139 G n 1 140 C n 1 141 C n 1 142 A n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 34 ? ? ? ? ? ? ? ? ? 'Zika virus' 64320 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 35 102 ? ? ? ? ? ? ? ? ? 'Zika virus' 64320 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 3 sample 'Biological sequence' 103 142 ? ? ? ? ? ? ? ? ? 'Zika virus' 64320 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 7LYG 7LYG ? 1 ? 1 2 GB KX879604.1 1070088724 ? 1 UGUUGAUCUGUGUGAAUCAGACUGCGACAGUUCGAGUUUGAAGCGAAAGCUAGCAACAGUAUCAACAG 8 3 PDB 7LYG 7LYG ? 1 ? 103 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7LYG A 1 ? 34 ? 7LYG 1 ? 34 ? 1 34 2 2 7LYG A 35 ? 102 ? 1070088724 8 ? 75 ? 35 102 3 3 7LYG A 103 ? 142 ? 7LYG 103 ? 142 ? 103 142 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7LYG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.85 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 74.62 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM Tris pH 8.1, 24% (w/v) polyethylene glycol 3350, 200 mM LiSO4, and 67 mM CsCl' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-11-11 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1271 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.1271 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7LYG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.8 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6864 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 10.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 23.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.8 _reflns_shell.d_res_low 3.89 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 6864 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.661 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 386.650 _refine.B_iso_mean 223.9086 _refine.B_iso_min 136.330 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7LYG _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.8040 _refine.ls_d_res_low 35.0360 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6864 _refine.ls_number_reflns_R_free 687 _refine.ls_number_reflns_R_work 6177 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 75.4900 _refine.ls_percent_reflns_R_free 10.0100 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2315 _refine.ls_R_factor_R_free 0.2715 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2270 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 7LYF _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 44.2400 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.6600 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 3.8040 _refine_hist.d_res_low 35.0360 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3039 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 142 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3039 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 ? 3399 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.678 ? 5300 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.034 ? 710 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 142 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 19.303 ? 1701 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.8042 4.0975 . . 70 632 40.0000 . . . 0.4147 0.0000 0.3742 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.0975 4.5091 . . 105 1009 63.0000 . . . 0.4127 0.0000 0.3639 . . . . . . . . . . . 'X-RAY DIFFRACTION' 4.5091 5.1598 . . 149 1346 83.0000 . . . 0.3824 0.0000 0.3250 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.1598 6.4940 . . 180 1556 96.0000 . . . 0.3635 0.0000 0.3144 . . . . . . . . . . . 'X-RAY DIFFRACTION' 6.4940 35.0360 . . 183 1634 95.0000 . . . 0.2144 0.0000 0.1696 . . . . . . . . . . . # _struct.entry_id 7LYG _struct.title 'Zika virus RNA promoter stem-loop A with tRNA-scaffold' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7LYG _struct_keywords.text RNA _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 138 N3 ? ? A G 1 A C 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 138 O2 ? ? A G 1 A C 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 138 N4 ? ? A G 1 A C 138 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 137 N1 ? ? A C 2 A G 137 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 137 O6 ? ? A C 2 A G 137 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 137 N2 ? ? A C 2 A G 137 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 136 N1 ? ? A C 3 A G 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 136 O6 ? ? A C 3 A G 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 136 N2 ? ? A C 3 A G 136 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 135 N1 ? ? A C 4 A G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 135 O6 ? ? A C 4 A G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 135 N2 ? ? A C 4 A G 135 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 134 N3 ? ? A G 5 A C 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 134 O2 ? ? A G 5 A C 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 134 N4 ? ? A G 5 A C 134 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N2 ? ? ? 1_555 A U 133 O2 ? ? A G 6 A U 133 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog17 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 132 N3 ? ? A A 7 A U 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 132 O4 ? ? A A 7 A U 132 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog20 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A U 8 N3 ? ? ? 1_555 A G 15 O6 ? ? A U 8 A G 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog22 hydrog ? ? A U 8 O2 ? ? ? 1_555 A G 15 N1 ? ? A U 8 A G 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog23 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 23 N7 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog24 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog31 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 114 O2 ? ? A G 15 A C 114 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog35 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 114 N3 ? ? A G 15 A C 114 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? A G 18 N2 ? ? ? 1_555 A U 121 O2 ? ? A G 18 A U 121 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 122 N3 ? ? A G 19 A C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 122 O2 ? ? A G 19 A C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 122 N4 ? ? A G 19 A C 122 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 22 N7 ? ? ? 1_555 A G 112 N1 ? ? A G 22 A G 112 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog41 hydrog ? ? A G 22 O6 ? ? ? 1_555 A G 112 N2 ? ? A G 22 A G 112 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog42 hydrog ? ? A A 26 N6 ? ? ? 1_555 A G 110 O6 ? ? A A 26 A G 110 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog43 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 109 N3 ? ? A G 27 A C 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 109 O2 ? ? A G 27 A C 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 109 N4 ? ? A G 27 A C 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 108 N2 ? ? A C 28 A G 108 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog47 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 107 N3 ? ? A G 29 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 29 N2 ? ? ? 1_555 A C 107 O2 ? ? A G 29 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 29 O6 ? ? ? 1_555 A C 107 N4 ? ? A G 29 A C 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 106 N3 ? ? A G 30 A C 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 106 O2 ? ? A G 30 A C 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 106 N4 ? ? A G 30 A C 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 105 N1 ? ? A U 31 A A 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 31 O4 ? ? ? 1_555 A A 105 N6 ? ? A U 31 A A 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A A 32 N1 ? ? ? 1_555 A A 105 N6 ? ? A A 32 A A 105 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog56 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 103 N3 ? ? A G 33 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 103 O2 ? ? A G 33 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 103 N4 ? ? A G 33 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 102 N1 ? ? A C 34 A G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 102 O6 ? ? A C 34 A G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 102 N2 ? ? A C 34 A G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 101 N1 ? ? A U 35 A A 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 35 O4 ? ? ? 1_555 A A 101 N6 ? ? A U 35 A A 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 100 N3 ? ? A G 36 A C 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 100 O2 ? ? A G 36 A C 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 100 N4 ? ? A G 36 A C 100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 99 N1 ? ? A U 37 A A 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A U 37 O4 ? ? ? 1_555 A A 99 N6 ? ? A U 37 A A 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A U 38 N3 ? ? ? 1_555 A A 98 N1 ? ? A U 38 A A 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A U 38 O4 ? ? ? 1_555 A A 98 N6 ? ? A U 38 A A 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 39 N1 ? ? ? 1_555 A C 97 N3 ? ? A G 39 A C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 39 N2 ? ? ? 1_555 A C 97 O2 ? ? A G 39 A C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 39 O6 ? ? ? 1_555 A C 97 N4 ? ? A G 39 A C 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 40 N1 ? ? ? 1_555 A U 96 N3 ? ? A A 40 A U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 40 N6 ? ? ? 1_555 A U 96 O4 ? ? A A 40 A U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A U 41 N3 ? ? ? 1_555 A A 95 N1 ? ? A U 41 A A 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A U 41 O4 ? ? ? 1_555 A A 95 N6 ? ? A U 41 A A 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A C 42 N3 ? ? ? 1_555 A G 93 N1 ? ? A C 42 A G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 42 N4 ? ? ? 1_555 A G 93 O6 ? ? A C 42 A G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A C 42 O2 ? ? ? 1_555 A G 93 N2 ? ? A C 42 A G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 43 N3 ? ? ? 1_555 A A 92 N1 ? ? A U 43 A A 92 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog82 hydrog ? ? A G 44 N1 ? ? ? 1_555 A C 91 N3 ? ? A G 44 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 44 N2 ? ? ? 1_555 A C 91 O2 ? ? A G 44 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 44 O6 ? ? ? 1_555 A C 91 N4 ? ? A G 44 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A U 45 N3 ? ? ? 1_555 A A 90 N1 ? ? A U 45 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A U 45 O4 ? ? ? 1_555 A A 90 N6 ? ? A U 45 A A 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 46 N1 ? ? ? 1_555 A C 78 N3 ? ? A G 46 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 46 N2 ? ? ? 1_555 A C 78 O2 ? ? A G 46 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 46 O6 ? ? ? 1_555 A C 78 N4 ? ? A G 46 A C 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A U 47 N3 ? ? ? 1_555 A G 77 O6 ? ? A U 47 A G 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog91 hydrog ? ? A U 47 O2 ? ? ? 1_555 A G 77 N1 ? ? A U 47 A G 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog92 hydrog ? ? A G 48 N2 ? ? ? 1_555 A G 77 O6 ? ? A G 48 A G 77 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog93 hydrog ? ? A U 51 O4 ? ? ? 1_555 A A 75 N6 ? ? A U 51 A A 75 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog94 hydrog ? ? A C 52 N3 ? ? ? 1_555 A G 74 N1 ? ? A C 52 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A C 52 N4 ? ? ? 1_555 A G 74 O6 ? ? A C 52 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A C 52 O2 ? ? ? 1_555 A G 74 N2 ? ? A C 52 A G 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A A 53 N1 ? ? ? 1_555 A U 73 N3 ? ? A A 53 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A A 53 N6 ? ? ? 1_555 A U 73 O4 ? ? A A 53 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A G 54 N2 ? ? ? 1_555 A U 72 O2 ? ? A G 54 A U 72 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog100 hydrog ? ? A A 55 N1 ? ? ? 1_555 A U 71 N3 ? ? A A 55 A U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A A 55 N6 ? ? ? 1_555 A U 71 O4 ? ? A A 55 A U 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A C 56 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 56 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A C 56 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 56 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A C 56 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 56 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A U 57 N3 ? ? ? 1_555 A A 69 N1 ? ? A U 57 A A 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A U 57 O4 ? ? ? 1_555 A A 69 N6 ? ? A U 57 A A 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A G 58 N2 ? ? ? 1_555 A G 60 N7 ? ? A G 58 A G 60 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog108 hydrog ? ? A C 59 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 59 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A C 59 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 59 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A C 59 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 59 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A G 60 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 60 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A G 60 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 60 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A G 60 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 60 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A A 61 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 61 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? A A 61 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 61 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog116 hydrog ? ? A C 115 N3 ? ? ? 1_555 A G 131 N1 ? ? A C 115 A G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog117 hydrog ? ? A C 115 N4 ? ? ? 1_555 A G 131 O6 ? ? A C 115 A G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog118 hydrog ? ? A C 115 O2 ? ? ? 1_555 A G 131 N2 ? ? A C 115 A G 131 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog119 hydrog ? ? A A 116 N1 ? ? ? 1_555 A U 130 N3 ? ? A A 116 A U 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? A A 116 N6 ? ? ? 1_555 A U 130 O4 ? ? A A 116 A U 130 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? A G 117 N1 ? ? ? 1_555 A C 129 N3 ? ? A G 117 A C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? A G 117 N2 ? ? ? 1_555 A C 129 O2 ? ? A G 117 A C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? A G 117 O6 ? ? ? 1_555 A C 129 N4 ? ? A G 117 A C 129 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? A G 118 N1 ? ? ? 1_555 A C 128 N3 ? ? A G 118 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? A G 118 N2 ? ? ? 1_555 A C 128 O2 ? ? A G 118 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? A G 118 O6 ? ? ? 1_555 A C 128 N4 ? ? A G 118 A C 128 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? A G 119 N1 ? ? ? 1_555 A C 127 N3 ? ? A G 119 A C 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? A G 119 N2 ? ? ? 1_555 A C 127 O2 ? ? A G 119 A C 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? A G 119 O6 ? ? ? 1_555 A C 127 N4 ? ? A G 119 A C 127 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? A U 120 N3 ? ? ? 1_555 A A 124 N7 ? ? A U 120 A A 124 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog131 hydrog ? ? A U 120 O2 ? ? ? 1_555 A A 124 N6 ? ? A U 120 A A 124 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 7LYG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.006366 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.006386 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013826 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 A 7 7 7 A A A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 U 16 16 16 U U A . n A 1 17 C 17 17 17 C C A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 A 26 26 26 A A A . n A 1 27 G 27 27 27 G G A . n A 1 28 C 28 28 28 C C A . n A 1 29 G 29 29 29 G G A . n A 1 30 G 30 30 30 G G A . n A 1 31 U 31 31 31 U U A . n A 1 32 A 32 32 32 A A A . n A 1 33 G 33 33 33 G G A . n A 1 34 C 34 34 34 C C A . n A 1 35 U 35 35 35 U U A . n A 1 36 G 36 36 36 G G A . n A 1 37 U 37 37 37 U U A . n A 1 38 U 38 38 38 U U A . n A 1 39 G 39 39 39 G G A . n A 1 40 A 40 40 40 A A A . n A 1 41 U 41 41 41 U U A . n A 1 42 C 42 42 42 C C A . n A 1 43 U 43 43 43 U U A . n A 1 44 G 44 44 44 G G A . n A 1 45 U 45 45 45 U U A . n A 1 46 G 46 46 46 G G A . n A 1 47 U 47 47 47 U U A . n A 1 48 G 48 48 48 G G A . n A 1 49 A 49 49 49 A A A . n A 1 50 A 50 50 50 A A A . n A 1 51 U 51 51 51 U U A . n A 1 52 C 52 52 52 C C A . n A 1 53 A 53 53 53 A A A . n A 1 54 G 54 54 54 G G A . n A 1 55 A 55 55 55 A A A . n A 1 56 C 56 56 56 C C A . n A 1 57 U 57 57 57 U U A . n A 1 58 G 58 58 58 G G A . n A 1 59 C 59 59 59 C C A . n A 1 60 G 60 60 60 G G A . n A 1 61 A 61 61 61 A A A . n A 1 62 C 62 62 62 C C A . n A 1 63 A 63 63 63 A A A . n A 1 64 G 64 64 64 G G A . n A 1 65 U 65 65 65 U U A . n A 1 66 U 66 66 66 U U A . n A 1 67 C 67 67 67 C C A . n A 1 68 G 68 68 68 G G A . n A 1 69 A 69 69 69 A A A . n A 1 70 G 70 70 70 G G A . n A 1 71 U 71 71 71 U U A . n A 1 72 U 72 72 72 U U A . n A 1 73 U 73 73 73 U U A . n A 1 74 G 74 74 74 G G A . n A 1 75 A 75 75 75 A A A . n A 1 76 A 76 76 76 A A A . n A 1 77 G 77 77 77 G G A . n A 1 78 C 78 78 78 C C A . n A 1 79 G 79 79 79 G G A . n A 1 80 A 80 80 80 A A A . n A 1 81 A 81 81 81 A A A . n A 1 82 A 82 82 82 A A A . n A 1 83 G 83 83 83 G G A . n A 1 84 C 84 84 84 C C A . n A 1 85 U 85 85 85 U U A . n A 1 86 A 86 86 86 A A A . n A 1 87 G 87 87 87 G G A . n A 1 88 C 88 88 88 C C A . n A 1 89 A 89 89 89 A A A . n A 1 90 A 90 90 90 A A A . n A 1 91 C 91 91 91 C C A . n A 1 92 A 92 92 92 A A A . n A 1 93 G 93 93 93 G G A . n A 1 94 U 94 94 94 U U A . n A 1 95 A 95 95 95 A A A . n A 1 96 U 96 96 96 U U A . n A 1 97 C 97 97 97 C C A . n A 1 98 A 98 98 98 A A A . n A 1 99 A 99 99 99 A A A . n A 1 100 C 100 100 100 C C A . n A 1 101 A 101 101 101 A A A . n A 1 102 G 102 102 102 G G A . n A 1 103 C 103 103 103 C C A . n A 1 104 U 104 104 104 U U A . n A 1 105 A 105 105 105 A A A . n A 1 106 C 106 106 106 C C A . n A 1 107 C 107 107 107 C C A . n A 1 108 G 108 108 108 G G A . n A 1 109 C 109 109 109 C C A . n A 1 110 G 110 110 110 G G A . n A 1 111 G 111 111 111 G G A . n A 1 112 G 112 112 112 G G A . n A 1 113 U 113 113 113 U U A . n A 1 114 C 114 114 114 C C A . n A 1 115 C 115 115 115 C C A . n A 1 116 A 116 116 116 A A A . n A 1 117 G 117 117 117 G G A . n A 1 118 G 118 118 118 G G A . n A 1 119 G 119 119 119 G G A . n A 1 120 U 120 120 120 U U A . n A 1 121 U 121 121 121 U U A . n A 1 122 C 122 122 122 C C A . n A 1 123 A 123 123 123 A A A . n A 1 124 A 124 124 124 A A A . n A 1 125 G 125 125 125 G G A . n A 1 126 U 126 126 126 U U A . n A 1 127 C 127 127 127 C C A . n A 1 128 C 128 128 128 C C A . n A 1 129 C 129 129 129 C C A . n A 1 130 U 130 130 130 U U A . n A 1 131 G 131 131 131 G G A . n A 1 132 U 132 132 132 U U A . n A 1 133 U 133 133 133 U U A . n A 1 134 C 134 134 134 C C A . n A 1 135 G 135 135 135 G G A . n A 1 136 G 136 136 136 G G A . n A 1 137 G 137 137 137 G G A . n A 1 138 C 138 138 138 C C A . n A 1 139 G 139 139 139 G G A . n A 1 140 C 140 140 140 C C A . n A 1 141 C 141 141 141 C C A . n A 1 142 A 142 142 142 A A A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-05-12 2 'Structure model' 1 1 2021-05-19 3 'Structure model' 1 2 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 3 'Structure model' '_database_2.pdbx_DOI' 7 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -6.9192 -13.1551 19.6104 2.2429 ? 0.1086 ? -0.0387 ? 2.4662 ? 0.1159 ? 1.9022 ? 1.0573 ? 1.4564 ? -0.5047 ? -0.1905 ? -0.5681 ? -0.1356 ? -0.0588 ? 0.1604 ? -0.0112 ? -0.5629 ? 0.1712 ? -1.0304 ? 0.1503 ? 0.8394 ? 0.0002 ? 2 'X-RAY DIFFRACTION' ? refined 33.4318 -59.3882 18.1119 2.7590 ? 0.2329 ? -0.0182 ? 2.3911 ? 0.1048 ? 3.0610 ? 7.9115 ? 0.6784 ? 0.2948 ? 1.0978 ? 3.5089 ? 0.3194 ? -0.8696 ? 0.8589 ? 1.9062 ? -1.8560 ? 1.1183 ? -0.0757 ? -0.7599 ? -0.2440 ? 0.0019 ? 3 'X-RAY DIFFRACTION' ? refined 10.5719 -63.9530 29.5238 2.1831 ? 0.0919 ? 0.3865 ? 3.0526 ? 0.0295 ? 2.6329 ? 0.9790 ? -0.2554 ? 1.2513 ? 0.3496 ? -1.0048 ? 0.8973 ? -1.4762 ? -0.2145 ? 0.3612 ? -0.4544 ? 1.8184 ? -0.5109 ? -0.0562 ? -1.6343 ? 0.0020 ? 4 'X-RAY DIFFRACTION' ? refined -16.7935 -2.0067 22.7566 1.6760 ? 0.3822 ? -0.0419 ? 2.2116 ? -0.1696 ? 1.6950 ? -1.5845 ? 2.7290 ? -0.5740 ? 2.6001 ? -0.1203 ? 2.2371 ? -0.1394 ? 0.0984 ? 0.5191 ? -0.3611 ? 0.2452 ? -1.1349 ? 0.2045 ? 0.8519 ? 0.0001 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 1 ? ? ? A 40 ? ? ;chain 'A' and (resid 1 through 40 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? A 41 ? ? ? A 80 ? ? ;chain 'A' and (resid 41 through 80) ; 3 'X-RAY DIFFRACTION' 3 ? ? A 81 ? ? ? A 100 ? ? ;chain 'A' and (resid 81 through 100 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? A 101 ? ? ? A 142 ? ? ;chain 'A' and (resid 101 through 142 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14_3260 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.27 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N6 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 A _pdbx_validate_close_contact.auth_seq_id_1 61 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OP1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 A _pdbx_validate_close_contact.auth_seq_id_2 63 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.483 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.124 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 7LYG 'double helix' 7LYG 'a-form double helix' 7LYG 'parallel strands' 7LYG 'hairpin loop' 7LYG 'bulge loop' 7LYG 'mismatched base pair' 7LYG 'internal loop' 7LYG 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 138 1_555 -0.182 -0.153 -0.044 0.230 8.192 -0.416 1 A_G1:C138_A A 1 ? A 138 ? 19 1 1 A C 2 1_555 A G 137 1_555 0.163 -0.119 -0.242 2.046 5.244 0.621 2 A_C2:G137_A A 2 ? A 137 ? 19 1 1 A C 3 1_555 A G 136 1_555 0.103 -0.118 -0.474 1.032 0.078 0.772 3 A_C3:G136_A A 3 ? A 136 ? 19 1 1 A C 4 1_555 A G 135 1_555 0.173 -0.111 -0.231 3.454 0.564 -3.399 4 A_C4:G135_A A 4 ? A 135 ? 19 1 1 A G 5 1_555 A C 134 1_555 -0.178 -0.165 -0.342 -1.238 -8.867 1.839 5 A_G5:C134_A A 5 ? A 134 ? 19 1 1 A G 6 1_555 A U 133 1_555 1.132 0.149 -0.314 -5.567 -3.333 9.421 6 A_G6:U133_A A 6 ? A 133 ? ? 1 1 A A 7 1_555 A U 132 1_555 0.049 -0.180 -0.792 3.965 3.978 2.569 7 A_A7:U132_A A 7 ? A 132 ? 20 1 1 A C 115 1_555 A G 131 1_555 -0.900 -0.098 -0.507 0.684 1.192 -5.430 8 A_C115:G131_A A 115 ? A 131 ? 19 1 1 A A 116 1_555 A U 130 1_555 0.046 -0.134 0.398 -3.232 6.731 -0.818 9 A_A116:U130_A A 116 ? A 130 ? 20 1 1 A G 117 1_555 A C 129 1_555 -0.190 -0.138 0.003 -6.659 -7.951 -3.087 10 A_G117:C129_A A 117 ? A 129 ? 19 1 1 A G 118 1_555 A C 128 1_555 -0.153 -0.112 -0.287 -6.444 -2.699 1.694 11 A_G118:C128_A A 118 ? A 128 ? 19 1 1 A G 119 1_555 A C 127 1_555 -0.226 -0.105 0.155 -7.955 0.492 0.141 12 A_G119:C127_A A 119 ? A 127 ? 19 1 1 A U 120 1_555 A A 124 1_555 4.001 -1.683 0.815 8.604 9.812 -91.352 13 A_U120:A124_A A 120 ? A 124 ? 24 4 1 A U 121 1_555 A G 18 1_555 0.682 -6.165 0.501 13.536 11.093 -97.766 14 A_U121:G18_A A 121 ? A 18 ? ? 6 1 A G 22 1_555 A C 13 1_555 -0.158 -0.106 0.000 -1.826 -1.829 0.864 15 A_G22:C13_A A 22 ? A 13 ? 19 1 1 A A 23 1_555 A U 12 1_555 -0.771 0.508 -0.145 -1.947 -7.642 -23.139 16 A_A23:U12_A A 23 ? A 12 ? ? ? 1 A G 24 1_555 A C 11 1_555 -0.228 -0.170 -0.674 -0.609 -3.759 3.752 17 A_G24:C11_A A 24 ? A 11 ? 19 1 1 A C 25 1_555 A G 10 1_555 0.249 -0.131 -0.295 0.124 -2.469 1.782 18 A_C25:G10_A A 25 ? A 10 ? 19 1 1 A A 26 1_555 A G 110 1_555 1.933 2.813 0.436 11.964 13.511 -52.551 19 A_A26:G110_A A 26 ? A 110 ? ? ? 1 A G 27 1_555 A C 109 1_555 -0.008 0.107 0.647 2.318 -10.579 4.048 20 A_G27:C109_A A 27 ? A 109 ? 19 1 1 A C 28 1_555 A G 108 1_555 -0.140 1.285 0.202 -2.580 -3.562 28.029 21 A_C28:G108_A A 28 ? A 108 ? ? 1 1 A G 29 1_555 A C 107 1_555 -0.205 -0.080 0.092 -0.117 -7.538 2.810 22 A_G29:C107_A A 29 ? A 107 ? 19 1 1 A G 30 1_555 A C 106 1_555 -0.206 -0.142 -0.465 2.760 3.327 -2.559 23 A_G30:C106_A A 30 ? A 106 ? 19 1 1 A U 31 1_555 A A 105 1_555 -0.356 -0.029 -1.162 13.415 2.212 -9.349 24 A_U31:A105_A A 31 ? A 105 ? 20 1 1 A G 15 1_555 A C 114 1_555 0.263 4.828 -0.328 2.141 -3.898 162.712 25 A_G15:C114_A A 15 ? A 114 ? 22 2 1 A G 19 1_555 A C 122 1_555 -0.151 -0.139 0.022 -7.524 -9.464 0.641 26 A_G19:C122_A A 19 ? A 122 ? 19 1 1 A G 33 1_555 A C 103 1_555 -0.169 -0.173 -0.974 -10.351 -1.285 0.677 27 A_G33:C103_A A 33 ? A 103 ? 19 1 1 A C 34 1_555 A G 102 1_555 0.219 -0.141 -0.175 -3.234 5.450 2.463 28 A_C34:G102_A A 34 ? A 102 ? 19 1 1 A U 35 1_555 A A 101 1_555 -0.012 -0.178 0.450 2.291 6.017 4.697 29 A_U35:A101_A A 35 ? A 101 ? 20 1 1 A G 36 1_555 A C 100 1_555 -0.100 -0.291 -1.019 -6.672 2.266 -2.889 30 A_G36:C100_A A 36 ? A 100 ? 19 1 1 A U 37 1_555 A A 99 1_555 -0.031 -0.150 -0.672 -1.407 4.460 1.036 31 A_U37:A99_A A 37 ? A 99 ? 20 1 1 A U 38 1_555 A A 98 1_555 0.068 -0.115 -0.104 2.591 2.494 8.031 32 A_U38:A98_A A 38 ? A 98 ? 20 1 1 A G 39 1_555 A C 97 1_555 -0.235 -0.133 -0.408 -5.676 0.818 3.145 33 A_G39:C97_A A 39 ? A 97 ? 19 1 1 A A 40 1_555 A U 96 1_555 0.082 -0.177 -0.365 -0.238 0.581 7.142 34 A_A40:U96_A A 40 ? A 96 ? 20 1 1 A U 41 1_555 A A 95 1_555 -0.146 -0.157 -0.489 -8.652 3.953 -5.379 35 A_U41:A95_A A 41 ? A 95 ? 20 1 1 A C 42 1_555 A G 93 1_555 0.087 -0.053 0.292 -1.803 -9.410 -1.165 36 A_C42:G93_A A 42 ? A 93 ? 19 1 1 A U 43 1_555 A A 92 1_555 -0.406 1.060 0.292 -4.044 -6.392 21.769 37 A_U43:A92_A A 43 ? A 92 ? ? ? 1 A G 44 1_555 A C 91 1_555 -0.352 -0.398 0.221 -6.349 -2.347 4.877 38 A_G44:C91_A A 44 ? A 91 ? 19 1 1 A U 45 1_555 A A 90 1_555 -0.036 -0.192 -0.053 1.288 2.029 3.670 39 A_U45:A90_A A 45 ? A 90 ? 20 1 1 A G 46 1_555 A C 78 1_555 -0.199 -0.244 -1.079 -5.388 -4.824 2.337 40 A_G46:C78_A A 46 ? A 78 ? 19 1 1 A U 47 1_555 A G 77 1_555 1.374 0.187 -0.732 -7.182 -3.009 13.443 41 A_U47:G77_A A 47 ? A 77 ? 28 1 1 A U 51 1_555 A A 75 1_555 -0.110 0.776 0.687 8.471 0.323 -24.553 42 A_U51:A75_A A 51 ? A 75 ? ? ? 1 A C 52 1_555 A G 74 1_555 0.153 -0.103 0.522 3.817 0.021 0.522 43 A_C52:G74_A A 52 ? A 74 ? 19 1 1 A A 53 1_555 A U 73 1_555 -0.023 -0.057 -0.086 4.331 1.912 -0.080 44 A_A53:U73_A A 53 ? A 73 ? 20 1 1 A G 54 1_555 A U 72 1_555 0.154 1.050 0.288 0.472 -0.423 18.912 45 A_G54:U72_A A 54 ? A 72 ? ? ? 1 A A 55 1_555 A U 71 1_555 1.999 0.065 0.163 -4.912 3.163 8.350 46 A_A55:U71_A A 55 ? A 71 ? 20 1 1 A C 56 1_555 A G 70 1_555 0.215 -0.136 0.291 1.125 5.316 3.985 47 A_C56:G70_A A 56 ? A 70 ? 19 1 1 A U 57 1_555 A A 69 1_555 0.009 -0.297 0.922 0.148 1.426 12.406 48 A_U57:A69_A A 57 ? A 69 ? 20 1 1 A C 59 1_555 A G 68 1_555 0.245 -0.260 0.999 5.040 6.931 13.034 49 A_C59:G68_A A 59 ? A 68 ? 19 1 1 A G 60 1_555 A C 67 1_555 -0.201 -0.239 -0.937 -5.064 -4.620 2.779 50 A_G60:C67_A A 60 ? A 67 ? 19 1 1 A A 61 1_555 A U 66 1_555 0.054 -0.532 -1.393 -1.610 6.324 0.602 51 A_A61:U66_A A 61 ? A 66 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 138 1_555 A C 2 1_555 A G 137 1_555 0.340 -2.234 3.122 0.830 6.425 38.057 -4.095 -0.422 2.730 9.767 -1.261 38.585 1 AA_G1C2:G137C138_AA A 1 ? A 138 ? A 2 ? A 137 ? 1 A C 2 1_555 A G 137 1_555 A C 3 1_555 A G 136 1_555 -0.241 -1.925 2.965 2.644 10.126 32.640 -4.577 0.750 2.259 17.466 -4.561 34.233 2 AA_C2C3:G136G137_AA A 2 ? A 137 ? A 3 ? A 136 ? 1 A C 3 1_555 A G 136 1_555 A C 4 1_555 A G 135 1_555 -0.558 -1.952 3.186 -1.487 4.830 29.225 -4.763 0.799 2.858 9.482 2.919 29.649 3 AA_C3C4:G135G136_AA A 3 ? A 136 ? A 4 ? A 135 ? 1 A C 4 1_555 A G 135 1_555 A G 5 1_555 A C 134 1_555 -0.280 -1.807 3.296 -1.677 15.615 23.090 -6.920 0.241 1.758 34.372 3.691 27.864 4 AA_C4G5:C134G135_AA A 4 ? A 135 ? A 5 ? A 134 ? 1 A G 5 1_555 A C 134 1_555 A G 6 1_555 A U 133 1_555 1.154 -1.856 3.274 -0.598 2.096 35.307 -3.358 -1.986 3.143 3.451 0.985 35.372 5 AA_G5G6:U133C134_AA A 5 ? A 134 ? A 6 ? A 133 ? 1 A G 6 1_555 A U 133 1_555 A A 7 1_555 A U 132 1_555 -1.039 -1.011 3.112 2.660 4.244 26.553 -3.149 2.842 2.804 9.137 -5.727 27.013 6 AA_G6A7:U132U133_AA A 6 ? A 133 ? A 7 ? A 132 ? 1 A A 7 1_555 A U 132 1_555 A C 115 1_555 A G 131 1_555 0.358 -2.872 3.652 -1.400 5.809 30.519 -6.510 -0.944 3.047 10.904 2.629 31.085 7 AA_A7C115:G131U132_AA A 7 ? A 132 ? A 115 ? A 131 ? 1 A C 115 1_555 A G 131 1_555 A A 116 1_555 A U 130 1_555 -0.951 -1.743 3.249 -7.236 6.882 32.469 -4.059 0.501 2.966 11.960 12.574 33.930 8 AA_C115A116:U130G131_AA A 115 ? A 131 ? A 116 ? A 130 ? 1 A A 116 1_555 A U 130 1_555 A G 117 1_555 A C 129 1_555 -0.215 -1.149 3.224 1.529 12.515 36.966 -3.131 0.494 2.699 19.070 -2.330 38.986 9 AA_A116G117:C129U130_AA A 116 ? A 130 ? A 117 ? A 129 ? 1 A G 117 1_555 A C 129 1_555 A G 118 1_555 A C 128 1_555 0.167 -1.846 3.349 -2.031 2.338 27.720 -4.388 -0.831 3.166 4.861 4.222 27.889 10 AA_G117G118:C128C129_AA A 117 ? A 129 ? A 118 ? A 128 ? 1 A G 118 1_555 A C 128 1_555 A G 119 1_555 A C 127 1_555 0.233 -1.893 3.178 -3.502 3.173 34.354 -3.635 -0.897 2.959 5.341 5.895 34.668 11 AA_G118G119:C127C128_AA A 118 ? A 128 ? A 119 ? A 127 ? 1 A G 119 1_555 A C 127 1_555 A U 120 1_555 A A 124 1_555 -1.939 -1.895 3.183 -2.542 -1.628 83.807 -1.380 1.392 3.259 -1.219 1.902 83.851 12 AA_G119U120:A124C127_AA A 119 ? A 127 ? A 120 ? A 124 ? 1 A U 120 1_555 A A 124 1_555 A U 121 1_555 A G 18 1_555 2.204 -1.253 3.662 14.753 -3.332 50.173 -1.152 -1.305 4.182 -3.830 -16.960 52.261 13 AA_U120U121:G18A124_AA A 120 ? A 124 ? A 121 ? A 18 ? 1 A G 22 1_555 A C 13 1_555 A A 23 1_555 A U 12 1_555 -2.321 -2.015 3.121 -6.873 12.520 24.047 -6.875 3.330 2.369 27.196 14.929 27.915 14 AA_G22A23:U12C13_AA A 22 ? A 13 ? A 23 ? A 12 ? 1 A A 23 1_555 A U 12 1_555 A G 24 1_555 A C 11 1_555 0.578 -0.720 3.396 -4.397 3.218 39.782 -1.424 -1.353 3.251 4.703 6.425 40.138 15 AA_A23G24:C11U12_AA A 23 ? A 12 ? A 24 ? A 11 ? 1 A G 24 1_555 A C 11 1_555 A C 25 1_555 A G 10 1_555 0.203 -1.751 3.175 -2.890 2.737 34.437 -3.338 -0.761 3.005 4.604 4.862 34.659 16 AA_G24C25:G10C11_AA A 24 ? A 11 ? A 25 ? A 10 ? 1 A C 25 1_555 A G 10 1_555 A A 26 1_555 A G 110 1_555 1.773 -3.904 2.996 -4.899 -7.891 71.606 -3.064 -1.662 3.243 -6.716 4.170 72.126 17 AA_C25A26:G110G10_AA A 25 ? A 10 ? A 26 ? A 110 ? 1 A A 26 1_555 A G 110 1_555 A G 27 1_555 A C 109 1_555 3.443 -1.264 3.547 -3.664 11.333 28.567 -4.464 -7.138 2.431 21.809 7.051 30.903 18 AA_A26G27:C109G110_AA A 26 ? A 110 ? A 27 ? A 109 ? 1 A G 27 1_555 A C 109 1_555 A C 28 1_555 A G 108 1_555 0.859 -1.864 3.652 -0.395 -2.613 31.152 -2.897 -1.679 3.781 -4.855 0.735 31.261 19 AA_G27C28:G108C109_AA A 27 ? A 109 ? A 28 ? A 108 ? 1 A C 28 1_555 A G 108 1_555 A G 29 1_555 A C 107 1_555 -1.157 -2.002 2.985 2.668 1.554 27.729 -4.479 2.960 2.749 3.230 -5.546 27.897 20 AA_C28G29:C107G108_AA A 28 ? A 108 ? A 29 ? A 107 ? 1 A G 29 1_555 A C 107 1_555 A G 30 1_555 A C 106 1_555 -1.324 -1.521 2.960 2.061 7.435 35.709 -3.300 2.355 2.526 11.953 -3.314 36.507 21 AA_G29G30:C106C107_AA A 29 ? A 107 ? A 30 ? A 106 ? 1 A G 30 1_555 A C 106 1_555 A U 31 1_555 A A 105 1_555 -0.117 -1.588 3.034 4.175 3.720 27.000 -4.145 1.156 2.746 7.862 -8.821 27.563 22 AA_G30U31:A105C106_AA A 30 ? A 106 ? A 31 ? A 105 ? 1 A G 33 1_555 A C 103 1_555 A C 34 1_555 A G 102 1_555 -0.345 -2.261 3.822 -5.890 2.509 35.244 -4.095 -0.415 3.666 4.102 9.629 35.803 23 AA_G33C34:G102C103_AA A 33 ? A 103 ? A 34 ? A 102 ? 1 A C 34 1_555 A G 102 1_555 A U 35 1_555 A A 101 1_555 0.431 -1.710 3.428 -0.325 2.597 29.077 -3.973 -0.928 3.262 5.160 0.645 29.192 24 AA_C34U35:A101G102_AA A 34 ? A 102 ? A 35 ? A 101 ? 1 A U 35 1_555 A A 101 1_555 A G 36 1_555 A C 100 1_555 -0.510 -1.415 3.648 8.387 10.990 31.633 -4.151 2.205 2.797 19.063 -14.547 34.451 25 AA_U35G36:C100A101_AA A 35 ? A 101 ? A 36 ? A 100 ? 1 A G 36 1_555 A C 100 1_555 A U 37 1_555 A A 99 1_555 0.854 -1.540 3.215 -2.645 3.077 30.296 -3.500 -2.119 2.965 5.855 5.032 30.560 26 AA_G36U37:A99C100_AA A 36 ? A 100 ? A 37 ? A 99 ? 1 A U 37 1_555 A A 99 1_555 A U 38 1_555 A A 98 1_555 1.144 -1.927 3.196 -0.784 5.871 29.805 -4.759 -2.327 2.745 11.274 1.506 30.374 27 AA_U37U38:A98A99_AA A 37 ? A 99 ? A 38 ? A 98 ? 1 A U 38 1_555 A A 98 1_555 A G 39 1_555 A C 97 1_555 0.527 -1.861 3.326 5.909 16.329 25.290 -6.358 0.026 1.882 32.817 -11.875 30.597 28 AA_U38G39:C97A98_AA A 38 ? A 98 ? A 39 ? A 97 ? 1 A G 39 1_555 A C 97 1_555 A A 40 1_555 A U 96 1_555 -0.100 -1.600 2.991 -3.525 6.736 34.042 -3.561 -0.300 2.633 11.330 5.930 34.856 29 AA_G39A40:U96C97_AA A 39 ? A 97 ? A 40 ? A 96 ? 1 A A 40 1_555 A U 96 1_555 A U 41 1_555 A A 95 1_555 -0.478 -1.834 3.412 1.438 1.551 42.119 -2.713 0.817 3.328 2.157 -2.000 42.170 30 AA_A40U41:A95U96_AA A 40 ? A 96 ? A 41 ? A 95 ? 1 A U 41 1_555 A A 95 1_555 A C 42 1_555 A G 93 1_555 1.947 -2.168 3.304 -11.602 13.944 40.984 -3.921 -3.450 1.913 18.844 15.679 44.661 31 AA_U41C42:G93A95_AA A 41 ? A 95 ? A 42 ? A 93 ? 1 A C 42 1_555 A G 93 1_555 A U 43 1_555 A A 92 1_555 0.797 -1.789 3.359 -3.843 1.109 25.173 -4.372 -2.904 3.124 2.525 8.747 25.484 32 AA_C42U43:A92G93_AA A 42 ? A 93 ? A 43 ? A 92 ? 1 A U 43 1_555 A A 92 1_555 A G 44 1_555 A C 91 1_555 -0.630 -1.775 2.860 -2.223 6.371 28.899 -4.575 0.845 2.462 12.551 4.379 29.660 33 AA_U43G44:C91A92_AA A 43 ? A 92 ? A 44 ? A 91 ? 1 A G 44 1_555 A C 91 1_555 A U 45 1_555 A A 90 1_555 -0.223 -1.064 3.181 1.632 5.442 36.023 -2.416 0.571 2.982 8.733 -2.620 36.454 34 AA_G44U45:A90C91_AA A 44 ? A 91 ? A 45 ? A 90 ? 1 A G 46 1_555 A C 78 1_555 A U 47 1_555 A G 77 1_555 0.469 -1.739 3.300 -2.695 0.868 36.887 -2.858 -1.101 3.219 1.369 4.251 36.992 35 AA_G46U47:G77C78_AA A 46 ? A 78 ? A 47 ? A 77 ? 1 A U 51 1_555 A A 75 1_555 A C 52 1_555 A G 74 1_555 1.378 -2.009 3.165 -0.586 1.857 34.990 -3.601 -2.372 3.034 3.086 0.973 35.042 36 AA_U51C52:G74A75_AA A 51 ? A 75 ? A 52 ? A 74 ? 1 A C 52 1_555 A G 74 1_555 A A 53 1_555 A U 73 1_555 -0.791 -1.955 3.068 -0.968 4.965 27.635 -5.068 1.427 2.707 10.285 2.006 28.085 37 AA_C52A53:U73G74_AA A 52 ? A 74 ? A 53 ? A 73 ? 1 A A 53 1_555 A U 73 1_555 A G 54 1_555 A U 72 1_555 1.478 -1.902 2.999 -1.115 7.736 30.324 -4.753 -2.916 2.398 14.489 2.089 31.292 38 AA_A53G54:U72U73_AA A 53 ? A 73 ? A 54 ? A 72 ? 1 A G 54 1_555 A U 72 1_555 A A 55 1_555 A U 71 1_555 -0.942 -1.425 3.082 0.561 5.325 39.694 -2.638 1.434 2.862 7.799 -0.821 40.039 39 AA_G54A55:U71U72_AA A 54 ? A 72 ? A 55 ? A 71 ? 1 A A 55 1_555 A U 71 1_555 A C 56 1_555 A G 70 1_555 0.073 -1.959 3.059 0.577 3.463 21.579 -6.364 0.007 2.716 9.170 -1.528 21.859 40 AA_A55C56:G70U71_AA A 55 ? A 71 ? A 56 ? A 70 ? 1 A C 56 1_555 A G 70 1_555 A U 57 1_555 A A 69 1_555 1.547 -2.156 3.296 0.476 4.574 26.100 -5.861 -3.255 2.909 10.028 -1.043 26.495 41 AA_C56U57:A69G70_AA A 56 ? A 70 ? A 57 ? A 69 ? 1 A U 57 1_555 A A 69 1_555 A C 59 1_555 A G 68 1_555 -2.149 -0.856 3.296 6.084 4.206 56.728 -1.118 2.568 3.006 4.406 -6.373 57.169 42 AA_U57C59:G68A69_AA A 57 ? A 69 ? A 59 ? A 68 ? 1 A C 59 1_555 A G 68 1_555 A G 60 1_555 A C 67 1_555 0.040 -2.318 3.556 20.793 8.489 18.653 -6.430 4.377 1.651 19.193 -47.009 29.119 43 AA_C59G60:C67G68_AA A 59 ? A 68 ? A 60 ? A 67 ? 1 A G 60 1_555 A C 67 1_555 A A 61 1_555 A U 66 1_555 -0.909 -0.799 3.483 -1.793 6.116 35.778 -2.180 1.195 3.346 9.858 2.890 36.323 44 AA_G60A61:U66C67_AA A 60 ? A 67 ? A 61 ? A 66 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 7LYF _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #