HEADER TRANSCRIPTION/INHIBITOR 10-MAR-21 7LZR TITLE CRYSTAL STRUCTURE OF THE BCL6 BTB DOMAIN IN COMPLEX WITH OICR-10256 COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: BTB DOMAIN, RESIDUES 5-129; COMPND 5 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 6 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS IMMUNITY, INFLAMMATORY RESPONSE, TRANSCRIPTION REPRESSOR, KEYWDS 2 TRANSCRIPTION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.A.KUNTZ,G.G.PRIVE REVDAT 2 18-OCT-23 7LZR 1 REMARK REVDAT 1 16-MAR-22 7LZR 0 JRNL AUTH D.A.KUNTZ,G.G.PRIVE JRNL TITL CRYSTAL STRUCTURE OF THE BCL6 BTB DOMAIN IN COMPLEX WITH JRNL TITL 2 OICR-10256 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 108082 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.159 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 5349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.3000 - 4.1600 0.99 3485 198 0.1929 0.2115 REMARK 3 2 4.1600 - 3.3000 0.99 3460 167 0.1352 0.1415 REMARK 3 3 3.3000 - 2.8800 0.99 3437 175 0.1293 0.1405 REMARK 3 4 2.8800 - 2.6200 0.99 3437 191 0.1236 0.1463 REMARK 3 5 2.6200 - 2.4300 1.00 3438 179 0.1162 0.1271 REMARK 3 6 2.4300 - 2.2900 1.00 3430 186 0.1103 0.1543 REMARK 3 7 2.2900 - 2.1700 1.00 3433 183 0.1059 0.1358 REMARK 3 8 2.1700 - 2.0800 1.00 3443 182 0.1044 0.1367 REMARK 3 9 2.0800 - 2.0000 1.00 3414 189 0.1081 0.1233 REMARK 3 10 2.0000 - 1.9300 1.00 3446 168 0.1060 0.1252 REMARK 3 11 1.9300 - 1.8700 1.00 3396 197 0.1070 0.1469 REMARK 3 12 1.8700 - 1.8200 1.00 3491 156 0.1071 0.1527 REMARK 3 13 1.8200 - 1.7700 1.00 3389 182 0.1095 0.1373 REMARK 3 14 1.7700 - 1.7300 1.00 3441 188 0.1106 0.1459 REMARK 3 15 1.7300 - 1.6900 1.00 3444 187 0.1117 0.1517 REMARK 3 16 1.6900 - 1.6500 1.00 3377 178 0.1159 0.1460 REMARK 3 17 1.6500 - 1.6200 1.00 3456 172 0.1193 0.1479 REMARK 3 18 1.6200 - 1.5900 1.00 3419 175 0.1273 0.1479 REMARK 3 19 1.5900 - 1.5600 1.00 3441 174 0.1276 0.1416 REMARK 3 20 1.5600 - 1.5300 1.00 3409 184 0.1365 0.1704 REMARK 3 21 1.5300 - 1.5100 0.99 3404 180 0.1440 0.1786 REMARK 3 22 1.5100 - 1.4800 1.00 3422 173 0.1473 0.1821 REMARK 3 23 1.4800 - 1.4600 1.00 3422 158 0.1545 0.1895 REMARK 3 24 1.4600 - 1.4400 0.99 3421 173 0.1681 0.1890 REMARK 3 25 1.4400 - 1.4200 0.99 3386 165 0.1796 0.2331 REMARK 3 26 1.4200 - 1.4000 1.00 3397 200 0.1938 0.2514 REMARK 3 27 1.4000 - 1.3900 0.99 3397 185 0.2084 0.2240 REMARK 3 28 1.3900 - 1.3700 0.99 3374 160 0.2186 0.2432 REMARK 3 29 1.3700 - 1.3500 0.99 3437 171 0.2400 0.2818 REMARK 3 30 1.3500 - 1.3400 0.99 3387 173 0.2468 0.2982 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.123 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.091 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 4295 REMARK 3 ANGLE : 1.561 5827 REMARK 3 CHIRALITY : 0.119 660 REMARK 3 PLANARITY : 0.011 722 REMARK 3 DIHEDRAL : 19.312 1600 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7LZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255392. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108129 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.339 REMARK 200 RESOLUTION RANGE LOW (A) : 73.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1R28 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 6000, 0.1M MES PH 4.6, 100 MM REMARK 280 AMSO4, 10% GLYCEROL, 10% DMSO, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.52750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 5 REMARK 465 GLU A 129 REMARK 465 ALA B 5 REMARK 465 ASP B 6 REMARK 465 ALA C 5 REMARK 465 ASP C 6 REMARK 465 GLU C 129 REMARK 465 ALA D 5 REMARK 465 ASP D 6 REMARK 465 GLU D 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 CG OD1 OD2 REMARK 470 SER B 7 N CB OG REMARK 470 GLU B 99 OE1 OE2 REMARK 470 ARG C 40 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 27 HH21 ARG B 28 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -108.46 41.51 REMARK 500 GLN A 113 61.94 62.93 REMARK 500 SER B 39 -121.19 49.16 REMARK 500 THR B 92 -16.13 -141.18 REMARK 500 GLN B 113 62.07 61.95 REMARK 500 SER C 39 -119.94 54.50 REMARK 500 GLN C 113 62.35 60.91 REMARK 500 SER D 39 -118.11 51.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 380 DISTANCE = 7.26 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YJJ A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YJJ B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YJJ C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YJJ D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL D 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7LWE RELATED DB: PDB REMARK 900 RELATED ID: 7LWF RELATED DB: PDB REMARK 900 RELATED ID: 7LWG RELATED DB: PDB DBREF 7LZR A 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7LZR B 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7LZR C 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7LZR D 5 129 UNP P41182 BCL6_HUMAN 5 129 SEQADV 7LZR GLN A 8 UNP P41182 CYS 8 ENGINEERED MUTATION SEQADV 7LZR ARG A 67 UNP P41182 CYS 67 ENGINEERED MUTATION SEQADV 7LZR ASN A 84 UNP P41182 CYS 84 ENGINEERED MUTATION SEQADV 7LZR GLN B 8 UNP P41182 CYS 8 ENGINEERED MUTATION SEQADV 7LZR ARG B 67 UNP P41182 CYS 67 ENGINEERED MUTATION SEQADV 7LZR ASN B 84 UNP P41182 CYS 84 ENGINEERED MUTATION SEQADV 7LZR GLN C 8 UNP P41182 CYS 8 ENGINEERED MUTATION SEQADV 7LZR ARG C 67 UNP P41182 CYS 67 ENGINEERED MUTATION SEQADV 7LZR ASN C 84 UNP P41182 CYS 84 ENGINEERED MUTATION SEQADV 7LZR GLN D 8 UNP P41182 CYS 8 ENGINEERED MUTATION SEQADV 7LZR ARG D 67 UNP P41182 CYS 67 ENGINEERED MUTATION SEQADV 7LZR ASN D 84 UNP P41182 CYS 84 ENGINEERED MUTATION SEQRES 1 A 125 ALA ASP SER GLN ILE GLN PHE THR ARG HIS ALA SER ASP SEQRES 2 A 125 VAL LEU LEU ASN LEU ASN ARG LEU ARG SER ARG ASP ILE SEQRES 3 A 125 LEU THR ASP VAL VAL ILE VAL VAL SER ARG GLU GLN PHE SEQRES 4 A 125 ARG ALA HIS LYS THR VAL LEU MET ALA CYS SER GLY LEU SEQRES 5 A 125 PHE TYR SER ILE PHE THR ASP GLN LEU LYS ARG ASN LEU SEQRES 6 A 125 SER VAL ILE ASN LEU ASP PRO GLU ILE ASN PRO GLU GLY SEQRES 7 A 125 PHE ASN ILE LEU LEU ASP PHE MET TYR THR SER ARG LEU SEQRES 8 A 125 ASN LEU ARG GLU GLY ASN ILE MET ALA VAL MET ALA THR SEQRES 9 A 125 ALA MET TYR LEU GLN MET GLU HIS VAL VAL ASP THR CYS SEQRES 10 A 125 ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 B 125 ALA ASP SER GLN ILE GLN PHE THR ARG HIS ALA SER ASP SEQRES 2 B 125 VAL LEU LEU ASN LEU ASN ARG LEU ARG SER ARG ASP ILE SEQRES 3 B 125 LEU THR ASP VAL VAL ILE VAL VAL SER ARG GLU GLN PHE SEQRES 4 B 125 ARG ALA HIS LYS THR VAL LEU MET ALA CYS SER GLY LEU SEQRES 5 B 125 PHE TYR SER ILE PHE THR ASP GLN LEU LYS ARG ASN LEU SEQRES 6 B 125 SER VAL ILE ASN LEU ASP PRO GLU ILE ASN PRO GLU GLY SEQRES 7 B 125 PHE ASN ILE LEU LEU ASP PHE MET TYR THR SER ARG LEU SEQRES 8 B 125 ASN LEU ARG GLU GLY ASN ILE MET ALA VAL MET ALA THR SEQRES 9 B 125 ALA MET TYR LEU GLN MET GLU HIS VAL VAL ASP THR CYS SEQRES 10 B 125 ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 C 125 ALA ASP SER GLN ILE GLN PHE THR ARG HIS ALA SER ASP SEQRES 2 C 125 VAL LEU LEU ASN LEU ASN ARG LEU ARG SER ARG ASP ILE SEQRES 3 C 125 LEU THR ASP VAL VAL ILE VAL VAL SER ARG GLU GLN PHE SEQRES 4 C 125 ARG ALA HIS LYS THR VAL LEU MET ALA CYS SER GLY LEU SEQRES 5 C 125 PHE TYR SER ILE PHE THR ASP GLN LEU LYS ARG ASN LEU SEQRES 6 C 125 SER VAL ILE ASN LEU ASP PRO GLU ILE ASN PRO GLU GLY SEQRES 7 C 125 PHE ASN ILE LEU LEU ASP PHE MET TYR THR SER ARG LEU SEQRES 8 C 125 ASN LEU ARG GLU GLY ASN ILE MET ALA VAL MET ALA THR SEQRES 9 C 125 ALA MET TYR LEU GLN MET GLU HIS VAL VAL ASP THR CYS SEQRES 10 C 125 ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 D 125 ALA ASP SER GLN ILE GLN PHE THR ARG HIS ALA SER ASP SEQRES 2 D 125 VAL LEU LEU ASN LEU ASN ARG LEU ARG SER ARG ASP ILE SEQRES 3 D 125 LEU THR ASP VAL VAL ILE VAL VAL SER ARG GLU GLN PHE SEQRES 4 D 125 ARG ALA HIS LYS THR VAL LEU MET ALA CYS SER GLY LEU SEQRES 5 D 125 PHE TYR SER ILE PHE THR ASP GLN LEU LYS ARG ASN LEU SEQRES 6 D 125 SER VAL ILE ASN LEU ASP PRO GLU ILE ASN PRO GLU GLY SEQRES 7 D 125 PHE ASN ILE LEU LEU ASP PHE MET TYR THR SER ARG LEU SEQRES 8 D 125 ASN LEU ARG GLU GLY ASN ILE MET ALA VAL MET ALA THR SEQRES 9 D 125 ALA MET TYR LEU GLN MET GLU HIS VAL VAL ASP THR CYS SEQRES 10 D 125 ARG LYS PHE ILE LYS ALA SER GLU HET SO4 A 201 5 HET GOL A 202 6 HET CL A 203 1 HET YJJ A 204 38 HET GOL A 205 12 HET YJJ B 201 38 HET SO4 B 202 5 HET CL B 203 1 HET CL B 204 1 HET SO4 C 201 5 HET GOL C 202 6 HET YJJ C 203 38 HET CL C 204 1 HET YJJ D 201 38 HET SO4 D 202 5 HET SO4 D 203 5 HET CL D 204 1 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM YJJ N-[5-CHLORO-2-(MORPHOLIN-4-YL)PYRIDIN-4-YL]-2-[5-(3- HETNAM 2 YJJ CYANO-4-HYDROXY-5-METHYLPHENYL)-3-METHYL-4-OXO-3,4- HETNAM 3 YJJ DIHYDRO-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL]ACETAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SO4 5(O4 S 2-) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 7 CL 5(CL 1-) FORMUL 8 YJJ 4(C26 H24 CL N7 O4) FORMUL 22 HOH *319(H2 O) HELIX 1 AA1 ARG A 13 ARG A 28 1 16 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 ASP A 63 1 10 HELIX 4 AA4 ASN A 79 SER A 93 1 15 HELIX 5 AA5 ASN A 101 GLN A 113 1 13 HELIX 6 AA6 MET A 114 SER A 128 1 15 HELIX 7 AA7 ARG B 13 ARG B 28 1 16 HELIX 8 AA8 HIS B 46 SER B 54 1 9 HELIX 9 AA9 SER B 54 ASP B 63 1 10 HELIX 10 AB1 ASN B 79 SER B 93 1 15 HELIX 11 AB2 ASN B 101 GLN B 113 1 13 HELIX 12 AB3 MET B 114 GLU B 129 1 16 HELIX 13 AB4 ARG C 13 ARG C 28 1 16 HELIX 14 AB5 HIS C 46 SER C 54 1 9 HELIX 15 AB6 SER C 54 ASP C 63 1 10 HELIX 16 AB7 ASP C 63 ASN C 68 1 6 HELIX 17 AB8 ASN C 79 SER C 93 1 15 HELIX 18 AB9 ASN C 101 GLN C 113 1 13 HELIX 19 AC1 MET C 114 SER C 128 1 15 HELIX 20 AC2 ARG D 13 ARG D 28 1 16 HELIX 21 AC3 HIS D 46 SER D 54 1 9 HELIX 22 AC4 SER D 54 ASP D 63 1 10 HELIX 23 AC5 ASN D 79 SER D 93 1 15 HELIX 24 AC6 ASN D 101 GLN D 113 1 13 HELIX 25 AC7 MET D 114 ALA D 127 1 14 SHEET 1 AA1 2 SER A 7 GLN A 10 0 SHEET 2 AA1 2 ARG B 94 LEU B 97 -1 O LEU B 97 N SER A 7 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 SHEET 1 AA3 2 ARG A 94 ASN A 96 0 SHEET 2 AA3 2 GLN B 8 GLN B 10 -1 O ILE B 9 N LEU A 95 SHEET 1 AA4 3 GLU B 41 ALA B 45 0 SHEET 2 AA4 3 VAL B 34 VAL B 38 -1 N ILE B 36 O PHE B 43 SHEET 3 AA4 3 VAL B 71 ASN B 73 1 O ILE B 72 N VAL B 37 SHEET 1 AA5 3 GLU C 41 ALA C 45 0 SHEET 2 AA5 3 VAL C 34 VAL C 38 -1 N ILE C 36 O PHE C 43 SHEET 3 AA5 3 VAL C 71 ASN C 73 1 O ILE C 72 N VAL C 37 SHEET 1 AA6 2 ARG C 94 ASN C 96 0 SHEET 2 AA6 2 GLN D 8 GLN D 10 -1 O ILE D 9 N LEU C 95 SHEET 1 AA7 3 GLU D 41 ALA D 45 0 SHEET 2 AA7 3 VAL D 34 VAL D 38 -1 N ILE D 36 O PHE D 43 SHEET 3 AA7 3 VAL D 71 ASN D 73 1 O ILE D 72 N VAL D 37 SITE 1 AC1 6 ARG A 26 SER A 27 ASP A 29 ARG A 44 SITE 2 AC1 6 ASP D 29 ARG D 44 SITE 1 AC2 7 ASN A 23 ARG A 26 ASP A 88 THR A 92 SITE 2 AC2 7 HOH A 301 SER D 27 ARG D 28 SITE 1 AC3 1 ASN A 73 SITE 1 AC4 24 MET A 51 ALA A 52 CYS A 53 SER A 54 SITE 2 AC4 24 GLY A 55 TYR A 58 PHE A 89 GLN A 113 SITE 3 AC4 24 MET A 114 GLU A 115 HIS A 116 VAL A 117 SITE 4 AC4 24 HOH A 315 HOH A 324 HIS B 14 ASP B 17 SITE 5 AC4 24 ASN B 21 ARG B 24 LEU B 25 ARG B 28 SITE 6 AC4 24 GLU C 81 ILE C 85 ASN C 96 ARG C 98 SITE 1 AC5 7 LEU A 31 ASP A 33 LYS A 47 THR A 48 SITE 2 AC5 7 ASP B 33 LYS B 47 THR B 48 SITE 1 AC6 21 HIS A 14 ASP A 17 ARG A 24 LEU A 25 SITE 2 AC6 21 ARG A 28 MET B 51 ALA B 52 CYS B 53 SITE 3 AC6 21 SER B 54 GLY B 55 TYR B 58 PHE B 89 SITE 4 AC6 21 GLN B 113 MET B 114 GLU B 115 HIS B 116 SITE 5 AC6 21 VAL B 117 HOH B 319 HOH B 329 HOH B 337 SITE 6 AC6 21 HOH D 372 SITE 1 AC7 7 ASP A 75 ILE A 78 HOH A 344 ASP B 75 SITE 2 AC7 7 GLU B 77 ILE B 78 HOH B 322 SITE 1 AC8 3 ARG B 98 GLU B 99 GLY B 100 SITE 1 AC9 1 THR B 12 SITE 1 AD1 4 PHE C 11 THR C 12 ARG C 13 HIS D 116 SITE 1 AD2 6 ASP C 33 LYS C 47 THR C 48 ASP D 33 SITE 2 AD2 6 LYS D 47 THR D 48 SITE 1 AD3 20 ASN A 96 MET C 51 ALA C 52 CYS C 53 SITE 2 AD3 20 SER C 54 GLY C 55 TYR C 58 PHE C 89 SITE 3 AD3 20 GLN C 113 MET C 114 GLU C 115 HIS C 116 SITE 4 AD3 20 VAL C 117 HOH C 323 HOH C 331 HOH C 340 SITE 5 AD3 20 HIS D 14 ASP D 17 ARG D 24 LEU D 25 SITE 1 AD4 2 ARG C 67 LEU D 31 SITE 1 AD5 26 GLU B 41 PHE B 43 GLU B 81 HOH B 303 SITE 2 AD5 26 HIS C 14 ASP C 17 ASN C 21 ARG C 24 SITE 3 AD5 26 LEU C 25 ARG C 28 MET D 51 ALA D 52 SITE 4 AD5 26 CYS D 53 SER D 54 GLY D 55 TYR D 58 SITE 5 AD5 26 PHE D 89 GLN D 113 MET D 114 GLU D 115 SITE 6 AD5 26 HIS D 116 VAL D 117 HOH D 314 HOH D 328 SITE 7 AD5 26 HOH D 337 HOH D 345 SITE 1 AD6 7 HIS C 116 HOH C 319 GLN D 10 PHE D 11 SITE 2 AD6 7 THR D 12 ARG D 13 HOH D 316 SITE 1 AD7 6 THR D 32 ASP D 33 VAL D 34 VAL D 35 SITE 2 AD7 6 ARG D 44 SER D 70 SITE 1 AD8 1 LYS D 66 CRYST1 55.363 73.055 64.421 90.00 109.50 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018063 0.000000 0.006396 0.00000 SCALE2 0.000000 0.013688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016467 0.00000