HEADER TRANSCRIPTION 11-MAR-21 7M0S TITLE N-TERMINAL DOMAIN OF PMRA FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO-COMPONENT SYSTEM RESPONSE REGULATOR PMRA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 1310912; SOURCE 4 GENE: PMRA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DEH3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS COLISTIN RESISTANCE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.PALETHORPE,M.E.MILTON,J.CAVANAGH REVDAT 3 18-OCT-23 7M0S 1 REMARK REVDAT 2 26-JAN-22 7M0S 1 JRNL REVDAT 1 03-NOV-21 7M0S 0 JRNL AUTH S.PALETHORPE,M.E.MILTON,E.C.PESCI,J.CAVANAGH JRNL TITL STRUCTURE OF THE ACINETOBACTER BAUMANNII PMRA RECEIVER JRNL TITL 2 DOMAIN AND INSIGHTS INTO CLINICAL MUTANTS AFFECTING DNA JRNL TITL 3 BINDING AND PROMOTING COLISTIN RESISTANCE. JRNL REF J.BIOCHEM. V. 170 787 2022 JRNL REFN ISSN 0021-924X JRNL PMID 34585233 JRNL DOI 10.1093/JB/MVAB102 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18RC6-3830 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 27883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.190 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 1.6800 - 1.6400 0.00 0 0 0.2023 0.2646 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2046 REMARK 3 ANGLE : 1.077 2767 REMARK 3 CHIRALITY : 0.060 324 REMARK 3 PLANARITY : 0.007 356 REMARK 3 DIHEDRAL : 19.903 787 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27942 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 17.8280 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.16200 REMARK 200 R SYM FOR SHELL (I) : 0.16200 REMARK 200 FOR SHELL : 10.75 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.18RC6-3830 REMARK 200 STARTING MODEL: 6ONT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE MONOHYDRATE, 0.1 REMARK 280 M BIS-TRIS PH 5.5, 25% W/V POLYETHYLENE GLYCOL 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.61600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 GLN B 124 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 202 O HOH B 242 2.02 REMARK 500 O HOH B 304 O HOH B 312 2.09 REMARK 500 O ALA A 123 O HOH A 201 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 82 74.43 -101.76 REMARK 500 MET B 57 -68.34 76.45 REMARK 500 ASP B 82 66.89 -106.92 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7M0S A 1 124 UNP A0A517D2C4_ACIBA DBREF2 7M0S A A0A517D2C4 1 124 DBREF1 7M0S B 1 124 UNP A0A517D2C4_ACIBA DBREF2 7M0S B A0A517D2C4 1 124 SEQADV 7M0S GLY A -2 UNP A0A517D2C EXPRESSION TAG SEQADV 7M0S SER A -1 UNP A0A517D2C EXPRESSION TAG SEQADV 7M0S HIS A 0 UNP A0A517D2C EXPRESSION TAG SEQADV 7M0S GLY B -2 UNP A0A517D2C EXPRESSION TAG SEQADV 7M0S SER B -1 UNP A0A517D2C EXPRESSION TAG SEQADV 7M0S HIS B 0 UNP A0A517D2C EXPRESSION TAG SEQRES 1 A 127 GLY SER HIS MET THR LYS ILE LEU MET ILE GLU ASP ASP SEQRES 2 A 127 PHE MET ILE ALA GLU SER THR ILE THR LEU LEU GLN TYR SEQRES 3 A 127 HIS GLN PHE GLU VAL GLU TRP VAL ASN ASN GLY LEU ASP SEQRES 4 A 127 GLY LEU ALA GLN LEU ALA LYS THR LYS PHE ASP LEU ILE SEQRES 5 A 127 LEU LEU ASP LEU GLY LEU PRO MET MET ASP GLY MET GLN SEQRES 6 A 127 VAL LEU LYS GLN ILE ARG GLN ARG ALA ALA THR PRO VAL SEQRES 7 A 127 LEU ILE ILE SER ALA ARG ASP GLN LEU GLN ASN ARG VAL SEQRES 8 A 127 ASP GLY LEU ASN LEU GLY ALA ASP ASP TYR LEU ILE LYS SEQRES 9 A 127 PRO TYR GLU PHE ASP GLU LEU LEU ALA ARG ILE HIS ALA SEQRES 10 A 127 LEU LEU ARG ARG SER GLY VAL GLU ALA GLN SEQRES 1 B 127 GLY SER HIS MET THR LYS ILE LEU MET ILE GLU ASP ASP SEQRES 2 B 127 PHE MET ILE ALA GLU SER THR ILE THR LEU LEU GLN TYR SEQRES 3 B 127 HIS GLN PHE GLU VAL GLU TRP VAL ASN ASN GLY LEU ASP SEQRES 4 B 127 GLY LEU ALA GLN LEU ALA LYS THR LYS PHE ASP LEU ILE SEQRES 5 B 127 LEU LEU ASP LEU GLY LEU PRO MET MET ASP GLY MET GLN SEQRES 6 B 127 VAL LEU LYS GLN ILE ARG GLN ARG ALA ALA THR PRO VAL SEQRES 7 B 127 LEU ILE ILE SER ALA ARG ASP GLN LEU GLN ASN ARG VAL SEQRES 8 B 127 ASP GLY LEU ASN LEU GLY ALA ASP ASP TYR LEU ILE LYS SEQRES 9 B 127 PRO TYR GLU PHE ASP GLU LEU LEU ALA ARG ILE HIS ALA SEQRES 10 B 127 LEU LEU ARG ARG SER GLY VAL GLU ALA GLN FORMUL 3 HOH *227(H2 O) HELIX 1 AA1 ASP A 10 HIS A 24 1 15 HELIX 2 AA2 ASN A 33 THR A 44 1 12 HELIX 3 AA3 ASP A 59 ALA A 71 1 13 HELIX 4 AA4 GLN A 83 LEU A 93 1 11 HELIX 5 AA5 GLU A 104 SER A 119 1 16 HELIX 6 AA6 ASP B 10 HIS B 24 1 15 HELIX 7 AA7 ASN B 33 THR B 44 1 12 HELIX 8 AA8 ASP B 59 ALA B 71 1 13 HELIX 9 AA9 GLN B 83 LEU B 93 1 11 HELIX 10 AB1 GLU B 104 SER B 119 1 16 SHEET 1 AA1 5 GLU A 27 VAL A 31 0 SHEET 2 AA1 5 LYS A 3 ILE A 7 1 N MET A 6 O GLU A 29 SHEET 3 AA1 5 LEU A 48 ASP A 52 1 O LEU A 50 N ILE A 7 SHEET 4 AA1 5 VAL A 75 SER A 79 1 O LEU A 76 N ILE A 49 SHEET 5 AA1 5 ASP A 97 ILE A 100 1 O LEU A 99 N ILE A 77 SHEET 1 AA2 5 GLU B 27 VAL B 31 0 SHEET 2 AA2 5 LYS B 3 ILE B 7 1 N MET B 6 O GLU B 29 SHEET 3 AA2 5 LEU B 48 ASP B 52 1 O LEU B 50 N ILE B 7 SHEET 4 AA2 5 VAL B 75 SER B 79 1 O LEU B 76 N ILE B 49 SHEET 5 AA2 5 ASP B 97 ILE B 100 1 O LEU B 99 N ILE B 77 CISPEP 1 LYS A 101 PRO A 102 0 -3.45 CISPEP 2 LYS B 101 PRO B 102 0 -5.01 CRYST1 32.398 39.232 91.266 90.00 95.66 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030866 0.000000 0.003059 0.00000 SCALE2 0.000000 0.025489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011011 0.00000