HEADER DNA BINDING PROTEIN/DNA 15-MAR-21 7M1X TITLE CRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING MOUSE HISTONE VARIANT H2A.Z COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (136-MER); COMPND 3 CHAIN: I; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (136-MER); COMPND 7 CHAIN: J; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HISTONE H3; COMPND 11 CHAIN: A, E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: HISTONE H4; COMPND 15 CHAIN: B, F; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: HISTONE H2A.Z; COMPND 19 CHAIN: C, G; COMPND 20 SYNONYM: H2A/Z; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 6; COMPND 23 MOLECULE: HISTONE H2B 1.1; COMPND 24 CHAIN: D, H; COMPND 25 SYNONYM: H2B1.1; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 32644; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 8 ORGANISM_TAXID: 32644; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 13 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 14 ORGANISM_TAXID: 8355; SOURCE 15 GENE: XELAEV_18002543MG; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET3C; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 21 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 22 ORGANISM_TAXID: 8355; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 24 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 25 MOL_ID: 5; SOURCE 26 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 27 ORGANISM_COMMON: MOUSE; SOURCE 28 ORGANISM_TAXID: 10090; SOURCE 29 GENE: H2AZ1, H2AFZ, H2AZ; SOURCE 30 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 31 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 32 MOL_ID: 6; SOURCE 33 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 34 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 35 ORGANISM_TAXID: 8355; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 37 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CHROMATIN, NUCLEOSOME, HISTONE VARIANT, EPIGENETICS, TRANSCRIPTION, KEYWDS 2 DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR D.TAN,T.LEWIS REVDAT 3 17-NOV-21 7M1X 1 JRNL REVDAT 2 27-OCT-21 7M1X 1 JRNL REVDAT 1 29-SEP-21 7M1X 0 JRNL AUTH T.S.LEWIS,V.SOKOLOVA,H.JUNG,H.NG,D.TAN JRNL TITL STRUCTURAL BASIS OF CHROMATIN REGULATION BY HISTONE VARIANT JRNL TITL 2 H2A.Z. JRNL REF NUCLEIC ACIDS RES. V. 49 11379 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34643712 JRNL DOI 10.1093/NAR/GKAB907 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, CTFFIND, RELION, RELION, RELION, REMARK 3 RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1F66 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : RMSD REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.700 REMARK 3 NUMBER OF PARTICLES : 42826 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7M1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255453. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : NUCLEOSOME CORE PARTICLE REMARK 245 CONTAINING VARIANT H2A.Z AND REMARK 245 CANONICAL CORE HISTONES; REMARK 245 HISTONE H3; HISTONE H4; HISTONE REMARK 245 VARIANT H2A.Z; HISTONE H2B; DNA REMARK 245 (136-MER); DNA (136-MER) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT FOR 4.5 SECONDS BEFORE REMARK 245 PLUNGING REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1950 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3300.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 92000 REMARK 245 CALIBRATED MAGNIFICATION : 123811 REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: I, J, A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DG I 63 REMARK 465 DG I 64 REMARK 465 DA I 65 REMARK 465 DT I 66 REMARK 465 DT I 67 REMARK 465 DC I 68 REMARK 465 DT I 69 REMARK 465 DC I 70 REMARK 465 DC I 71 REMARK 465 DA I 72 REMARK 465 DG I 73 REMARK 465 DC J -73 REMARK 465 DT J -72 REMARK 465 DG J -71 REMARK 465 DG J -70 REMARK 465 DA J -69 REMARK 465 DG J -68 REMARK 465 DA J -67 REMARK 465 DA J -66 REMARK 465 DT J -65 REMARK 465 DC J -64 REMARK 465 DC J -63 REMARK 465 MET A 400 REMARK 465 ALA A 401 REMARK 465 ARG A 402 REMARK 465 THR A 403 REMARK 465 LYS A 404 REMARK 465 GLN A 405 REMARK 465 THR A 406 REMARK 465 ALA A 407 REMARK 465 ARG A 408 REMARK 465 LYS A 409 REMARK 465 SER A 410 REMARK 465 THR A 411 REMARK 465 GLY A 412 REMARK 465 GLY A 413 REMARK 465 LYS A 414 REMARK 465 ALA A 415 REMARK 465 PRO A 416 REMARK 465 ARG A 417 REMARK 465 LYS A 418 REMARK 465 GLN A 419 REMARK 465 LEU A 420 REMARK 465 ALA A 421 REMARK 465 THR A 422 REMARK 465 LYS A 423 REMARK 465 ALA A 424 REMARK 465 ALA A 425 REMARK 465 ARG A 426 REMARK 465 LYS A 427 REMARK 465 SER A 428 REMARK 465 ALA A 429 REMARK 465 PRO A 430 REMARK 465 ALA A 431 REMARK 465 THR A 432 REMARK 465 GLY A 433 REMARK 465 GLU A 434 REMARK 465 VAL A 435 REMARK 465 LYS A 436 REMARK 465 LYS A 437 REMARK 465 PRO A 438 REMARK 465 HIS A 439 REMARK 465 ARG A 440 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 MET C 800 REMARK 465 ALA C 801 REMARK 465 GLY C 802 REMARK 465 GLY C 803 REMARK 465 LYS C 804 REMARK 465 ALA C 805 REMARK 465 GLY C 806 REMARK 465 LYS C 807 REMARK 465 ASP C 808 REMARK 465 SER C 809 REMARK 465 GLY C 810 REMARK 465 LYS C 811 REMARK 465 ALA C 812 REMARK 465 LYS C 813 REMARK 465 THR C 814 REMARK 465 LYS C 815 REMARK 465 GLY C 919 REMARK 465 LYS C 920 REMARK 465 LYS C 921 REMARK 465 GLY C 922 REMARK 465 GLN C 923 REMARK 465 GLN C 924 REMARK 465 LYS C 925 REMARK 465 THR C 926 REMARK 465 VAL C 927 REMARK 465 MET D 1197 REMARK 465 PRO D 1198 REMARK 465 GLU D 1199 REMARK 465 PRO D 1200 REMARK 465 ALA D 1201 REMARK 465 LYS D 1202 REMARK 465 SER D 1203 REMARK 465 ALA D 1204 REMARK 465 PRO D 1205 REMARK 465 ALA D 1206 REMARK 465 PRO D 1207 REMARK 465 LYS D 1208 REMARK 465 LYS D 1209 REMARK 465 GLY D 1210 REMARK 465 SER D 1211 REMARK 465 LYS D 1212 REMARK 465 LYS D 1213 REMARK 465 ALA D 1214 REMARK 465 VAL D 1215 REMARK 465 THR D 1216 REMARK 465 LYS D 1217 REMARK 465 THR D 1218 REMARK 465 GLN D 1219 REMARK 465 LYS D 1220 REMARK 465 LYS D 1221 REMARK 465 ASP D 1222 REMARK 465 GLY D 1223 REMARK 465 LYS D 1224 REMARK 465 LYS D 1225 REMARK 465 ARG D 1226 REMARK 465 ARG D 1227 REMARK 465 MET E 600 REMARK 465 ALA E 601 REMARK 465 ARG E 602 REMARK 465 THR E 603 REMARK 465 LYS E 604 REMARK 465 GLN E 605 REMARK 465 THR E 606 REMARK 465 ALA E 607 REMARK 465 ARG E 608 REMARK 465 LYS E 609 REMARK 465 SER E 610 REMARK 465 THR E 611 REMARK 465 GLY E 612 REMARK 465 GLY E 613 REMARK 465 LYS E 614 REMARK 465 ALA E 615 REMARK 465 PRO E 616 REMARK 465 ARG E 617 REMARK 465 LYS E 618 REMARK 465 GLN E 619 REMARK 465 LEU E 620 REMARK 465 ALA E 621 REMARK 465 THR E 622 REMARK 465 LYS E 623 REMARK 465 ALA E 624 REMARK 465 ALA E 625 REMARK 465 ARG E 626 REMARK 465 LYS E 627 REMARK 465 SER E 628 REMARK 465 ALA E 629 REMARK 465 PRO E 630 REMARK 465 ALA E 631 REMARK 465 THR E 632 REMARK 465 GLY E 633 REMARK 465 GLU E 634 REMARK 465 VAL E 635 REMARK 465 LYS E 636 REMARK 465 LYS E 637 REMARK 465 PRO E 638 REMARK 465 MET F 200 REMARK 465 SER F 201 REMARK 465 GLY F 202 REMARK 465 ARG F 203 REMARK 465 GLY F 204 REMARK 465 LYS F 205 REMARK 465 GLY F 206 REMARK 465 GLY F 207 REMARK 465 LYS F 208 REMARK 465 GLY F 209 REMARK 465 LEU F 210 REMARK 465 GLY F 211 REMARK 465 LYS F 212 REMARK 465 GLY F 213 REMARK 465 GLY F 214 REMARK 465 ALA F 215 REMARK 465 LYS F 216 REMARK 465 MET G 1000 REMARK 465 ALA G 1001 REMARK 465 GLY G 1002 REMARK 465 GLY G 1003 REMARK 465 LYS G 1004 REMARK 465 ALA G 1005 REMARK 465 GLY G 1006 REMARK 465 LYS G 1007 REMARK 465 ASP G 1008 REMARK 465 SER G 1009 REMARK 465 GLY G 1010 REMARK 465 LYS G 1011 REMARK 465 ALA G 1012 REMARK 465 LYS G 1013 REMARK 465 THR G 1014 REMARK 465 LYS G 1015 REMARK 465 PRO G 1111 REMARK 465 HIS G 1112 REMARK 465 ILE G 1113 REMARK 465 HIS G 1114 REMARK 465 LYS G 1115 REMARK 465 SER G 1116 REMARK 465 LEU G 1117 REMARK 465 ILE G 1118 REMARK 465 GLY G 1119 REMARK 465 LYS G 1120 REMARK 465 LYS G 1121 REMARK 465 GLY G 1122 REMARK 465 GLN G 1123 REMARK 465 GLN G 1124 REMARK 465 LYS G 1125 REMARK 465 THR G 1126 REMARK 465 VAL G 1127 REMARK 465 MET H 1397 REMARK 465 PRO H 1398 REMARK 465 GLU H 1399 REMARK 465 PRO H 1400 REMARK 465 ALA H 1401 REMARK 465 LYS H 1402 REMARK 465 SER H 1403 REMARK 465 ALA H 1404 REMARK 465 PRO H 1405 REMARK 465 ALA H 1406 REMARK 465 PRO H 1407 REMARK 465 LYS H 1408 REMARK 465 LYS H 1409 REMARK 465 GLY H 1410 REMARK 465 SER H 1411 REMARK 465 LYS H 1412 REMARK 465 LYS H 1413 REMARK 465 ALA H 1414 REMARK 465 VAL H 1415 REMARK 465 THR H 1416 REMARK 465 LYS H 1417 REMARK 465 THR H 1418 REMARK 465 GLN H 1419 REMARK 465 LYS H 1420 REMARK 465 LYS H 1421 REMARK 465 ASP H 1422 REMARK 465 GLY H 1423 REMARK 465 LYS H 1424 REMARK 465 LYS H 1425 REMARK 465 ARG H 1426 REMARK 465 ARG H 1427 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT I 35 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC I 52 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT I 54 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC J 6 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT J 13 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DT J 41 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 458 11.73 -141.12 REMARK 500 LYS B 77 19.04 59.09 REMARK 500 THR C 841 78.13 58.59 REMARK 500 SER C 842 -45.12 -26.26 REMARK 500 PHE F 300 -60.45 -109.67 REMARK 500 SER G1018 73.32 60.19 REMARK 500 ARG G1019 -33.82 -39.13 REMARK 500 HIS G1043 64.84 -104.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR C 841 SER C 842 -142.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-23626 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF NUCLEOSOME CONTAINING MOUSE HISTONE VARIANT REMARK 900 H2A.Z DBREF 7M1X I -73 73 PDB 7M1X 7M1X -73 73 DBREF 7M1X J -73 73 PDB 7M1X 7M1X -73 73 DBREF1 7M1X A 400 535 UNP A0A310TTQ1_XENLA DBREF2 7M1X A A0A310TTQ1 1 136 DBREF 7M1X B 0 102 UNP P62799 H4_XENLA 1 103 DBREF 7M1X C 800 927 UNP P0C0S6 H2AZ_MOUSE 1 128 DBREF 7M1X D 1197 1322 UNP P02281 H2B11_XENLA 1 126 DBREF1 7M1X E 600 735 UNP A0A310TTQ1_XENLA DBREF2 7M1X E A0A310TTQ1 1 136 DBREF 7M1X F 200 302 UNP P62799 H4_XENLA 1 103 DBREF 7M1X G 1000 1127 UNP P0C0S6 H2AZ_MOUSE 1 128 DBREF 7M1X H 1397 1522 UNP P02281 H2B11_XENLA 1 126 SEQADV 7M1X GLU A 434 UNP A0A310TTQ GLY 35 CONFLICT SEQADV 7M1X THR D 1229 UNP P02281 SER 33 ENGINEERED MUTATION SEQADV 7M1X GLU E 634 UNP A0A310TTQ GLY 35 CONFLICT SEQADV 7M1X THR H 1429 UNP P02281 SER 33 ENGINEERED MUTATION SEQRES 1 I 147 DA DC DA DG DG DA DT DG DT DA DT DA DT SEQRES 2 I 147 DA DT DC DT DG DA DC DA DC DG DT DG DC SEQRES 3 I 147 DC DT DG DG DA DG DA DC DT DA DG DG DG SEQRES 4 I 147 DA DG DT DA DA DT DC DC DC DC DT DT DG SEQRES 5 I 147 DG DC DG DG DT DT DA DA DA DA DC DG DC SEQRES 6 I 147 DG DG DG DG DG DA DC DA DG DC DG DC DG SEQRES 7 I 147 DT DA DC DG DT DG DC DG DT DT DT DA DA SEQRES 8 I 147 DG DC DG DG DT DG DC DT DA DG DA DG DC SEQRES 9 I 147 DT DG DT DC DT DA DC DG DA DC DC DA DA SEQRES 10 I 147 DT DT DG DA DG DC DG DG DC DC DT DC DG SEQRES 11 I 147 DG DC DA DC DC DG DG DG DA DT DT DC DT SEQRES 12 I 147 DC DC DA DG SEQRES 1 J 147 DC DT DG DG DA DG DA DA DT DC DC DC DG SEQRES 2 J 147 DG DT DG DC DC DG DA DG DG DC DC DG DC SEQRES 3 J 147 DT DC DA DA DT DT DG DG DT DC DG DT DA SEQRES 4 J 147 DG DA DC DA DG DC DT DC DT DA DG DC DA SEQRES 5 J 147 DC DC DG DC DT DT DA DA DA DC DG DC DA SEQRES 6 J 147 DC DG DT DA DC DG DC DG DC DT DG DT DC SEQRES 7 J 147 DC DC DC DC DG DC DG DT DT DT DT DA DA SEQRES 8 J 147 DC DC DG DC DC DA DA DG DG DG DG DA DT SEQRES 9 J 147 DT DA DC DT DC DC DC DT DA DG DT DC DT SEQRES 10 J 147 DC DC DA DG DG DC DA DC DG DT DG DT DC SEQRES 11 J 147 DA DG DA DT DA DT DA DT DA DC DA DT DC SEQRES 12 J 147 DC DT DG DT SEQRES 1 A 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 A 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 A 136 ARG LYS SER ALA PRO ALA THR GLY GLU VAL LYS LYS PRO SEQRES 4 A 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 A 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 A 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 A 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 A 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL ALA LEU SEQRES 9 A 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 A 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 A 136 ILE ARG GLY GLU ARG ALA SEQRES 1 B 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 B 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 B 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 B 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 B 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 B 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 B 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 B 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 128 MET ALA GLY GLY LYS ALA GLY LYS ASP SER GLY LYS ALA SEQRES 2 C 128 LYS THR LYS ALA VAL SER ARG SER GLN ARG ALA GLY LEU SEQRES 3 C 128 GLN PHE PRO VAL GLY ARG ILE HIS ARG HIS LEU LYS SER SEQRES 4 C 128 ARG THR THR SER HIS GLY ARG VAL GLY ALA THR ALA ALA SEQRES 5 C 128 VAL TYR SER ALA ALA ILE LEU GLU TYR LEU THR ALA GLU SEQRES 6 C 128 VAL LEU GLU LEU ALA GLY ASN ALA SER LYS ASP LEU LYS SEQRES 7 C 128 VAL LYS ARG ILE THR PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 8 C 128 ARG GLY ASP GLU GLU LEU ASP SER LEU ILE LYS ALA THR SEQRES 9 C 128 ILE ALA GLY GLY GLY VAL ILE PRO HIS ILE HIS LYS SER SEQRES 10 C 128 LEU ILE GLY LYS LYS GLY GLN GLN LYS THR VAL SEQRES 1 D 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 D 126 GLY SER LYS LYS ALA VAL THR LYS THR GLN LYS LYS ASP SEQRES 3 D 126 GLY LYS LYS ARG ARG LYS THR ARG LYS GLU SER TYR ALA SEQRES 4 D 126 ILE TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 D 126 THR GLY ILE SER SER LYS ALA MET SER ILE MET ASN SER SEQRES 6 D 126 PHE VAL ASN ASP VAL PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 D 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 D 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 D 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 D 126 ALA VAL THR LYS TYR THR SER ALA LYS SEQRES 1 E 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 E 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 E 136 ARG LYS SER ALA PRO ALA THR GLY GLU VAL LYS LYS PRO SEQRES 4 E 136 HIS ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 E 136 ARG ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 E 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 E 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET SEQRES 8 E 136 ALA LEU GLN GLU ALA SER GLU ALA TYR LEU VAL ALA LEU SEQRES 9 E 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 E 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 E 136 ILE ARG GLY GLU ARG ALA SEQRES 1 F 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 F 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 F 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 F 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 F 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 F 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 F 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 F 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 128 MET ALA GLY GLY LYS ALA GLY LYS ASP SER GLY LYS ALA SEQRES 2 G 128 LYS THR LYS ALA VAL SER ARG SER GLN ARG ALA GLY LEU SEQRES 3 G 128 GLN PHE PRO VAL GLY ARG ILE HIS ARG HIS LEU LYS SER SEQRES 4 G 128 ARG THR THR SER HIS GLY ARG VAL GLY ALA THR ALA ALA SEQRES 5 G 128 VAL TYR SER ALA ALA ILE LEU GLU TYR LEU THR ALA GLU SEQRES 6 G 128 VAL LEU GLU LEU ALA GLY ASN ALA SER LYS ASP LEU LYS SEQRES 7 G 128 VAL LYS ARG ILE THR PRO ARG HIS LEU GLN LEU ALA ILE SEQRES 8 G 128 ARG GLY ASP GLU GLU LEU ASP SER LEU ILE LYS ALA THR SEQRES 9 G 128 ILE ALA GLY GLY GLY VAL ILE PRO HIS ILE HIS LYS SER SEQRES 10 G 128 LEU ILE GLY LYS LYS GLY GLN GLN LYS THR VAL SEQRES 1 H 126 MET PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS SEQRES 2 H 126 GLY SER LYS LYS ALA VAL THR LYS THR GLN LYS LYS ASP SEQRES 3 H 126 GLY LYS LYS ARG ARG LYS THR ARG LYS GLU SER TYR ALA SEQRES 4 H 126 ILE TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP SEQRES 5 H 126 THR GLY ILE SER SER LYS ALA MET SER ILE MET ASN SER SEQRES 6 H 126 PHE VAL ASN ASP VAL PHE GLU ARG ILE ALA GLY GLU ALA SEQRES 7 H 126 SER ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SEQRES 8 H 126 SER ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO SEQRES 9 H 126 GLY GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS SEQRES 10 H 126 ALA VAL THR LYS TYR THR SER ALA LYS HELIX 1 AA1 THR A 445 SER A 457 1 13 HELIX 2 AA2 ARG A 463 LYS A 479 1 17 HELIX 3 AA3 GLN A 485 ALA A 514 1 30 HELIX 4 AA4 MET A 520 GLY A 532 1 13 HELIX 5 AA5 ASP B 24 ILE B 29 5 6 HELIX 6 AA6 THR B 30 GLY B 42 1 13 HELIX 7 AA7 LEU B 49 ALA B 76 1 28 HELIX 8 AA8 THR B 82 GLN B 93 1 12 HELIX 9 AA9 SER C 818 GLY C 824 1 7 HELIX 10 AB1 PRO C 828 SER C 838 1 11 HELIX 11 AB2 GLY C 847 ASP C 875 1 29 HELIX 12 AB3 THR C 882 ASP C 893 1 12 HELIX 13 AB4 GLU C 894 ILE C 900 1 7 HELIX 14 AB5 TYR D 1234 HIS D 1246 1 13 HELIX 15 AB6 SER D 1252 ASN D 1281 1 30 HELIX 16 AB7 THR D 1287 LEU D 1299 1 13 HELIX 17 AB8 PRO D 1300 SER D 1320 1 21 HELIX 18 AB9 GLY E 644 SER E 657 1 14 HELIX 19 AC1 ARG E 663 LYS E 679 1 17 HELIX 20 AC2 GLN E 685 ALA E 714 1 30 HELIX 21 AC3 MET E 720 GLY E 732 1 13 HELIX 22 AC4 ASP F 224 ILE F 229 5 6 HELIX 23 AC5 THR F 230 GLY F 242 1 13 HELIX 24 AC6 LEU F 249 ALA F 276 1 28 HELIX 25 AC7 THR F 282 GLN F 293 1 12 HELIX 26 AC8 SER G 1018 ALA G 1023 1 6 HELIX 27 AC9 PRO G 1028 ARG G 1039 1 12 HELIX 28 AD1 GLY G 1047 LYS G 1077 1 31 HELIX 29 AD2 THR G 1082 ASP G 1093 1 12 HELIX 30 AD3 ASP G 1093 ILE G 1100 1 8 HELIX 31 AD4 TYR H 1434 HIS H 1446 1 13 HELIX 32 AD5 SER H 1452 ASN H 1481 1 30 HELIX 33 AD6 THR H 1487 LEU H 1499 1 13 HELIX 34 AD7 PRO H 1500 SER H 1520 1 21 SHEET 1 AA1 2 ARG A 483 PHE A 484 0 SHEET 2 AA1 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 483 SHEET 1 AA2 2 ARG C 845 VAL C 846 0 SHEET 2 AA2 2 THR D1285 ILE D1286 1 O ILE D1286 N ARG C 845 SHEET 1 AA3 2 ARG C 880 ILE C 881 0 SHEET 2 AA3 2 GLY D1250 ILE D1251 1 O GLY D1250 N ILE C 881 SHEET 1 AA4 2 ARG E 683 PHE E 684 0 SHEET 2 AA4 2 THR F 280 VAL F 281 1 O VAL F 281 N ARG E 683 SHEET 1 AA5 2 THR E 718 ILE E 719 0 SHEET 2 AA5 2 ARG F 245 ILE F 246 1 O ARG F 245 N ILE E 719 SHEET 1 AA6 2 ARG G1045 VAL G1046 0 SHEET 2 AA6 2 THR H1485 ILE H1486 1 O ILE H1486 N ARG G1045 SHEET 1 AA7 2 ARG G1080 ILE G1081 0 SHEET 2 AA7 2 GLY H1450 ILE H1451 1 O GLY H1450 N ILE G1081 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000