HEADER LYASE 18-MAR-21 7M3K TITLE CRYSTAL STRUCTURE OF GALACTONATE DEHYDRATASE FROM BRUCELLA MELITENSIS TITLE 2 BIOVAR ABORTUS 2308 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTONATE DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRABA.18180.A.B1; COMPND 5 EC: 4.2.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUCELLA ABORTUS; SOURCE 3 ORGANISM_TAXID: 359391; SOURCE 4 STRAIN: 2308; SOURCE 5 GENE: BAB2_0294; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BRABA.18180.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 7M3K 1 REMARK REVDAT 1 07-APR-21 7M3K 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF GALACTONATE DEHYDRATASE FROM BRUCELLA JRNL TITL 2 MELITENSIS BIOVAR ABORTUS 2308 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.370 REMARK 3 FREE R VALUE TEST SET COUNT : 2037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2400 - 5.6700 1.00 3232 148 0.1984 0.2326 REMARK 3 2 5.6700 - 4.5000 1.00 3054 138 0.1691 0.1673 REMARK 3 3 4.5000 - 3.9300 1.00 2993 160 0.1493 0.1757 REMARK 3 4 3.9300 - 3.5700 1.00 2993 128 0.1637 0.2029 REMARK 3 5 3.5700 - 3.3200 1.00 2981 129 0.1797 0.2111 REMARK 3 6 3.3200 - 3.1200 1.00 2968 125 0.1859 0.2362 REMARK 3 7 3.1200 - 2.9700 1.00 2949 138 0.1862 0.2126 REMARK 3 8 2.9700 - 2.8400 1.00 2931 156 0.1866 0.2316 REMARK 3 9 2.8400 - 2.7300 1.00 2936 127 0.1974 0.2172 REMARK 3 10 2.7300 - 2.6300 1.00 2929 136 0.1877 0.2143 REMARK 3 11 2.6300 - 2.5500 1.00 2941 124 0.1845 0.2131 REMARK 3 12 2.5500 - 2.4800 1.00 2910 150 0.1872 0.2086 REMARK 3 13 2.4800 - 2.4100 1.00 2922 109 0.1880 0.2205 REMARK 3 14 2.4100 - 2.3500 1.00 2917 138 0.2190 0.2443 REMARK 3 15 2.3500 - 2.3000 1.00 2917 131 0.2357 0.2939 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.234 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4391 REMARK 3 ANGLE : 0.757 5982 REMARK 3 CHIRALITY : 0.049 671 REMARK 3 PLANARITY : 0.007 802 REMARK 3 DIHEDRAL : 12.975 1559 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.6848 39.2816 120.9829 REMARK 3 T TENSOR REMARK 3 T11: 0.2705 T22: 0.3437 REMARK 3 T33: 0.3405 T12: 0.0508 REMARK 3 T13: 0.0390 T23: -0.0983 REMARK 3 L TENSOR REMARK 3 L11: 0.6969 L22: 1.3945 REMARK 3 L33: 1.6301 L12: -0.2193 REMARK 3 L13: -0.0291 L23: 0.2146 REMARK 3 S TENSOR REMARK 3 S11: -0.0690 S12: 0.1364 S13: -0.1937 REMARK 3 S21: -0.1069 S22: -0.0886 S23: 0.2750 REMARK 3 S31: 0.2371 S32: -0.2450 S33: 0.1248 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 404 THROUGH 504 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7830 40.1217 106.4338 REMARK 3 T TENSOR REMARK 3 T11: 0.6924 T22: 0.8570 REMARK 3 T33: 1.2774 T12: -0.0422 REMARK 3 T13: -0.0816 T23: -0.1889 REMARK 3 L TENSOR REMARK 3 L11: 3.8389 L22: 3.2803 REMARK 3 L33: 3.0461 L12: 0.2458 REMARK 3 L13: 1.8111 L23: -0.3142 REMARK 3 S TENSOR REMARK 3 S11: 0.1055 S12: -0.5024 S13: -0.0194 REMARK 3 S21: 0.3574 S22: -0.1917 S23: 1.7130 REMARK 3 S31: 0.3377 S32: -0.7476 S33: 0.0748 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 505 THROUGH 597 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3855 48.7647 97.5188 REMARK 3 T TENSOR REMARK 3 T11: 0.6388 T22: 0.6990 REMARK 3 T33: 0.5080 T12: 0.1185 REMARK 3 T13: -0.2243 T23: -0.2008 REMARK 3 L TENSOR REMARK 3 L11: 0.8827 L22: 3.6366 REMARK 3 L33: 2.5073 L12: 0.3334 REMARK 3 L13: 0.2900 L23: 0.4148 REMARK 3 S TENSOR REMARK 3 S11: 0.2990 S12: 0.7088 S13: -0.4475 REMARK 3 S21: -1.0614 S22: -0.2947 S23: 0.8270 REMARK 3 S31: 0.2765 S32: -0.2278 S33: 0.0077 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.0334 59.9061 127.4032 REMARK 3 T TENSOR REMARK 3 T11: 0.2550 T22: 0.2857 REMARK 3 T33: 0.2016 T12: 0.0777 REMARK 3 T13: 0.0276 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 4.1775 L22: 3.9375 REMARK 3 L33: 3.8366 L12: 0.4457 REMARK 3 L13: 0.0256 L23: 0.6962 REMARK 3 S TENSOR REMARK 3 S11: -0.1621 S12: 0.2844 S13: -0.0424 REMARK 3 S21: -0.1531 S22: 0.0781 S23: -0.1950 REMARK 3 S31: -0.1621 S32: 0.3332 S33: 0.0995 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M3K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000255575. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46675 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.88 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.48 REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MR-ROSETTA REMARK 200 STARTING MODEL: MR-ROSETTA STARTING FROM PDB ENTRY 5OYN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RIGAKUREAGENTS JCSG+ SCREEN, CONDITION REMARK 280 B10 200MM MAGNESIUM CHLORIDE, 100MM SODIUM CACODYLATE PH 6.5, 20% REMARK 280 (W/V) PEG 3350: BRABA.18180.A.B1.PS02071 AT 27.12MG/ML: TRAY REMARK 280 256086 B10: CRYO: DIRECT: PUCK BVD7-1., PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.71333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.85667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 111.71333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.85667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 111.71333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 55.85667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 111.71333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 55.85667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 72.47500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 125.53038 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 279.28333 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 72.47500 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 125.53038 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 279.28333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1014 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LYS A 3 REMARK 465 PRO A 4 REMARK 465 VAL A 5 REMARK 465 THR A 6 REMARK 465 PRO A 7 REMARK 465 LYS A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 598 REMARK 465 ASP A 599 REMARK 465 ASN A 600 REMARK 465 HIS A 601 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 ASP A 22 CG OD1 OD2 REMARK 470 LEU A 29 CG CD1 CD2 REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 ARG A 99 CG CD NE CZ NH1 NH2 REMARK 470 THR A 101 OG1 CG2 REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 ARG A 177 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 179 CG CD1 CD2 REMARK 470 LEU A 180 CG CD1 CD2 REMARK 470 GLU A 184 CG CD OE1 OE2 REMARK 470 ILE A 185 CG1 CG2 CD1 REMARK 470 TYR A 187 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 188 CG CD OE1 NE2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 GLN A 378 CG CD OE1 NE2 REMARK 470 LYS A 381 CG CD CE NZ REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 410 CG OD1 ND2 REMARK 470 ARG A 411 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 413 CG CD1 CD2 REMARK 470 LYS A 417 CG CD CE NZ REMARK 470 LYS A 425 CG CD CE NZ REMARK 470 VAL A 427 CG1 CG2 REMARK 470 LEU A 444 CG CD1 CD2 REMARK 470 GLU A 445 CG CD OE1 OE2 REMARK 470 ASP A 447 CG OD1 OD2 REMARK 470 GLU A 448 CG CD OE1 OE2 REMARK 470 HIS A 449 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 451 CG1 CG2 REMARK 470 LEU A 452 CG CD1 CD2 REMARK 470 LEU A 477 CG CD1 CD2 REMARK 470 LEU A 478 CG CD1 CD2 REMARK 470 LYS A 479 CG CD CE NZ REMARK 470 LYS A 480 CG CD CE NZ REMARK 470 ILE A 482 CG1 CG2 CD1 REMARK 470 THR A 483 OG1 CG2 REMARK 470 LYS A 519 CG CD CE NZ REMARK 470 ARG A 523 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 526 CG1 CG2 CD1 REMARK 470 LEU A 528 CG CD1 CD2 REMARK 470 ARG A 530 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 535 CG1 CG2 CD1 REMARK 470 ILE A 537 CG1 CG2 CD1 REMARK 470 ASP A 539 CG OD1 OD2 REMARK 470 GLU A 540 CG CD OE1 OE2 REMARK 470 LEU A 542 CG CD1 CD2 REMARK 470 GLU A 544 CG CD OE1 OE2 REMARK 470 ARG A 546 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 547 CG CD CE NZ REMARK 470 LEU A 549 CG CD1 CD2 REMARK 470 GLU A 550 CG CD OE1 OE2 REMARK 470 VAL A 552 CG1 CG2 REMARK 470 LYS A 556 CG CD CE NZ REMARK 470 GLU A 559 CG CD OE1 OE2 REMARK 470 ARG A 594 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 596 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 61.98 -155.29 REMARK 500 ASN A 146 34.96 76.08 REMARK 500 GLN A 378 67.60 -118.43 REMARK 500 LEU A 413 30.59 -91.52 REMARK 500 ASP A 430 77.85 -100.93 REMARK 500 ASP A 447 -154.87 -121.21 REMARK 500 ASN A 470 67.71 -67.33 REMARK 500 THR A 483 -74.88 -89.05 REMARK 500 THR A 593 31.65 -89.41 REMARK 500 ARG A 594 -20.34 67.47 REMARK 500 LEU A 596 155.18 60.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 705 REMARK 610 PG4 A 706 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 CYS A 131 SG 119.8 REMARK 620 3 HOH A1018 O 96.8 117.7 REMARK 620 4 HOH A1022 O 101.0 133.0 75.9 REMARK 620 N 1 2 3 DBREF 7M3K A 1 601 UNP Q2YJ21 Q2YJ21_BRUA2 1 601 SEQADV 7M3K MET A -7 UNP Q2YJ21 INITIATING METHIONINE SEQADV 7M3K ALA A -6 UNP Q2YJ21 EXPRESSION TAG SEQADV 7M3K HIS A -5 UNP Q2YJ21 EXPRESSION TAG SEQADV 7M3K HIS A -4 UNP Q2YJ21 EXPRESSION TAG SEQADV 7M3K HIS A -3 UNP Q2YJ21 EXPRESSION TAG SEQADV 7M3K HIS A -2 UNP Q2YJ21 EXPRESSION TAG SEQADV 7M3K HIS A -1 UNP Q2YJ21 EXPRESSION TAG SEQADV 7M3K HIS A 0 UNP Q2YJ21 EXPRESSION TAG SEQADV 7M3K MET A 244 UNP Q2YJ21 THR 244 CONFLICT SEQRES 1 A 609 MET ALA HIS HIS HIS HIS HIS HIS MET ASN LYS PRO VAL SEQRES 2 A 609 THR PRO LYS THR PRO LYS LEU ARG SER ARG ALA TRP PHE SEQRES 3 A 609 ASP ASN PRO ASP ASP VAL ASP MET THR ALA LEU TYR LEU SEQRES 4 A 609 GLU ARG TYR MET ASN TYR GLY LEU SER GLN GLU GLU LEU SEQRES 5 A 609 GLN SER GLY ARG PRO ILE ILE GLY ILE ALA GLN THR GLY SEQRES 6 A 609 SER ASP LEU SER PRO CYS ASN ARG HIS HIS LEU GLU LEU SEQRES 7 A 609 ALA LYS ARG VAL ARG ASP GLY VAL ARG GLU ALA GLY GLY SEQRES 8 A 609 ILE VAL ILE GLU PHE PRO VAL HIS PRO ILE GLN GLU THR SEQRES 9 A 609 GLY LYS ARG PRO THR ALA GLY LEU ASP ARG ASN LEU ALA SEQRES 10 A 609 TYR LEU GLY LEU VAL GLU VAL LEU TYR GLY TYR PRO LEU SEQRES 11 A 609 ASP GLY VAL VAL LEU THR ILE GLY CYS ASP LYS THR THR SEQRES 12 A 609 PRO ALA CYS LEU MET ALA ALA ALA THR VAL ASN ILE PRO SEQRES 13 A 609 ALA ILE ALA LEU SER VAL GLY PRO MET LEU ASN GLY TRP SEQRES 14 A 609 PHE ARG GLY GLU ARG THR GLY SER GLY THR ILE VAL TRP SEQRES 15 A 609 LYS ALA ARG GLU LEU LEU ALA LYS GLY GLU ILE ASP TYR SEQRES 16 A 609 GLN GLY PHE VAL LYS LEU VAL ALA SER SER ALA PRO SER SEQRES 17 A 609 THR GLY TYR CYS ASN THR MET GLY THR ALA THR THR MET SEQRES 18 A 609 ASN SER LEU ALA GLU ALA LEU GLY MET GLN LEU PRO GLY SEQRES 19 A 609 SER ALA ALA ILE PRO ALA PRO TYR ARG ASP ARG GLN GLU SEQRES 20 A 609 VAL ALA TYR LEU MET GLY ARG ARG ILE VAL GLU MET VAL SEQRES 21 A 609 HIS GLU ASP LEU LYS PRO SER ASP ILE LEU THR LYS GLU SEQRES 22 A 609 ALA PHE ILE ASN ALA ILE ARG VAL ASN SER ALA ILE GLY SEQRES 23 A 609 GLY SER THR ASN ALA PRO ILE HIS LEU ASN ALA LEU ALA SEQRES 24 A 609 ARG HIS ILE GLY VAL GLU LEU THR VAL ASP ASP TRP GLN SEQRES 25 A 609 LYS TYR GLY GLU GLU ILE PRO LEU LEU VAL ASN LEU GLN SEQRES 26 A 609 PRO ALA GLY GLU TYR LEU GLY GLU ASP TYR TYR HIS ALA SEQRES 27 A 609 GLY GLY VAL PRO ALA VAL VAL ASN GLN LEU MET GLY GLN SEQRES 28 A 609 GLY LEU ILE HIS GLU ASP ALA ILE THR VAL ASN GLY LYS SEQRES 29 A 609 THR ILE GLY GLU ASN CYS LYS ASN ALA THR ILE GLU ASP SEQRES 30 A 609 GLY ASN VAL ILE LYS THR TYR ASP GLN PRO LEU LYS LYS SEQRES 31 A 609 HIS ALA GLY PHE ARG VAL LEU ARG GLY ASN LEU PHE SER SEQRES 32 A 609 SER ALA ILE MET LYS LEU SER VAL ILE SER ASP GLU PHE SEQRES 33 A 609 ARG ASN ARG TYR LEU SER ASP ALA LYS ASP PRO ASN ALA SEQRES 34 A 609 PHE GLU GLY LYS ALA VAL VAL PHE ASP GLY PRO GLU ASP SEQRES 35 A 609 TYR HIS HIS ARG ILE ASP ASP PRO ALA LEU GLU ILE ASP SEQRES 36 A 609 GLU HIS THR VAL LEU PHE MET ARG GLY ALA GLY PRO ILE SEQRES 37 A 609 GLY TYR PRO GLY ALA ALA GLU VAL VAL ASN MET ARG ALA SEQRES 38 A 609 PRO ASP TYR LEU LEU LYS LYS GLY ILE THR SER LEU PRO SEQRES 39 A 609 CYS ILE GLY ASP GLY ARG GLN SER GLY THR SER GLY SER SEQRES 40 A 609 PRO SER ILE LEU ASN ALA SER PRO GLU ALA ALA ALA GLY SEQRES 41 A 609 GLY GLY LEU ALA ILE LEU LYS THR GLY ASP ARG VAL ARG SEQRES 42 A 609 ILE ASP LEU GLY ARG GLY THR ALA ASP ILE LEU ILE SER SEQRES 43 A 609 ASP GLU GLU LEU ALA GLU ARG ARG LYS ALA LEU GLU ALA SEQRES 44 A 609 VAL GLY GLY TYR LYS TYR PRO GLU SER GLN THR PRO TRP SEQRES 45 A 609 GLN GLU ILE GLN ARG ALA VAL ILE GLY GLN MET GLU THR SEQRES 46 A 609 GLY ALA VAL LEU GLU ASN ALA VAL LYS TYR GLN ASP ILE SEQRES 47 A 609 ALA HIS THR ARG GLY LEU PRO ARG ASP ASN HIS HET ZN A 701 1 HET CL A 702 1 HET CL A 703 1 HET CL A 704 1 HET PG4 A 705 10 HET PG4 A 706 7 HET PEG A 707 7 HET PGE A 708 10 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 CL 3(CL 1-) FORMUL 6 PG4 2(C8 H18 O5) FORMUL 8 PEG C4 H10 O3 FORMUL 9 PGE C6 H14 O4 FORMUL 10 HOH *268(H2 O) HELIX 1 AA1 SER A 14 ASP A 19 1 6 HELIX 2 AA2 ASP A 23 MET A 35 1 13 HELIX 3 AA3 SER A 40 GLN A 45 1 6 HELIX 4 AA4 HIS A 66 GLY A 82 1 17 HELIX 5 AA5 THR A 101 LEU A 104 5 4 HELIX 6 AA6 ASP A 105 TYR A 120 1 16 HELIX 7 AA7 LYS A 133 ASN A 146 1 14 HELIX 8 AA8 GLY A 170 ALA A 181 1 12 HELIX 9 AA9 GLN A 188 SER A 196 1 9 HELIX 10 AB1 GLY A 208 LEU A 220 1 13 HELIX 11 AB2 TYR A 234 ASP A 255 1 22 HELIX 12 AB3 LYS A 257 LEU A 262 1 6 HELIX 13 AB4 THR A 263 GLY A 278 1 16 HELIX 14 AB5 ASN A 282 GLY A 295 1 14 HELIX 15 AB6 THR A 299 GLU A 308 1 10 HELIX 16 AB7 LEU A 323 GLY A 331 1 9 HELIX 17 AB8 GLY A 331 GLY A 342 1 12 HELIX 18 AB9 THR A 357 LYS A 363 1 7 HELIX 19 AC1 SER A 402 ILE A 404 5 3 HELIX 20 AC2 SER A 405 LEU A 413 1 9 HELIX 21 AC3 GLY A 431 ILE A 439 1 9 HELIX 22 AC4 ASP A 441 GLU A 445 5 5 HELIX 23 AC5 PRO A 474 LYS A 479 1 6 HELIX 24 AC6 GLU A 508 GLY A 512 5 5 HELIX 25 AC7 GLY A 513 LEU A 518 5 6 HELIX 26 AC8 SER A 538 VAL A 552 1 15 HELIX 27 AC9 THR A 562 ALA A 570 1 9 HELIX 28 AD1 GLN A 574 GLY A 578 5 5 HELIX 29 AD2 LEU A 581 VAL A 585 5 5 SHEET 1 AA1 4 ILE A 84 PRO A 89 0 SHEET 2 AA1 4 ILE A 50 GLN A 55 1 N ILE A 51 O ILE A 84 SHEET 3 AA1 4 GLY A 124 ILE A 129 1 O VAL A 126 N GLY A 52 SHEET 4 AA1 4 ALA A 149 SER A 153 1 O ILE A 150 N LEU A 127 SHEET 1 AA2 2 GLY A 160 PHE A 162 0 SHEET 2 AA2 2 GLU A 165 THR A 167 -1 O GLU A 165 N PHE A 162 SHEET 1 AA3 3 PHE A 386 GLY A 391 0 SHEET 2 AA3 3 PHE A 394 LYS A 400 -1 O ALA A 397 N LEU A 389 SHEET 3 AA3 3 ILE A 502 SER A 506 -1 O SER A 506 N SER A 396 SHEET 1 AA4 5 CYS A 487 GLY A 489 0 SHEET 2 AA4 5 THR A 450 ARG A 455 1 N LEU A 452 O ILE A 488 SHEET 3 AA4 5 ALA A 421 ASP A 430 1 N VAL A 427 O PHE A 453 SHEET 4 AA4 5 ARG A 523 ASP A 527 -1 O ILE A 526 N PHE A 422 SHEET 5 AA4 5 THR A 532 ILE A 535 -1 O ASP A 534 N ARG A 525 LINK SG CYS A 63 ZN ZN A 701 1555 1555 2.33 LINK SG CYS A 131 ZN ZN A 701 1555 1555 2.32 LINK ZN ZN A 701 O HOH A1018 1555 1555 2.51 LINK ZN ZN A 701 O HOH A1022 1555 1555 2.52 CISPEP 1 ARG A 99 PRO A 100 0 2.16 CISPEP 2 GLN A 317 PRO A 318 0 6.47 CISPEP 3 TYR A 462 PRO A 463 0 -11.19 CISPEP 4 GLY A 464 ALA A 465 0 -1.94 CISPEP 5 SER A 506 PRO A 507 0 -5.38 CRYST1 144.950 144.950 167.570 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006899 0.003983 0.000000 0.00000 SCALE2 0.000000 0.007966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005968 0.00000