HEADER GENE REGULATION 19-MAR-21 7M40 TITLE DISCOVERY OF SMALL MOLECULE ANTAGONISTS OF HUMAN RETINOBLASTOMA TITLE 2 BINDING PROTEIN 4 (RBBP4) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-BINDING PROTEIN RBBP4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT C,CAF-1 SUBUNIT C, COMPND 5 CHROMATIN ASSEMBLY FACTOR I P48 SUBUNIT,CAF-I 48 KDA SUBUNIT,CAF-I COMPND 6 P48,NUCLEOSOME-REMODELING FACTOR SUBUNIT RBAP48,RETINOBLASTOMA- COMPND 7 BINDING PROTEIN 4,RBBP-4,RETINOBLASTOMA-BINDING PROTEIN P48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBBP4, RBAP48; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_CELL: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PFBOH-LIC KEYWDS RBBP4, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR S.PERVEEN,A.DONG,W.TEMPEL,C.ZEPEDA-VELAZQUEZ,M.ABBEY,D.MCLEOD, AUTHOR 2 R.MARCELLUS,M.MOHAMMED,D.ENSAN,D.PANAGOPOULOS,V.TRUSH,E.GIBSON, AUTHOR 3 P.J.BROWN,C.H.ARROWSMITH,M.SCHAPIRA,R.AL-AWAR,M.VEDADI,STRUCTURAL AUTHOR 4 GENOMICS CONSORTIUM (SGC) REVDAT 2 18-OCT-23 7M40 1 REMARK REVDAT 1 12-MAY-21 7M40 0 JRNL AUTH S.PERVEEN,C.ZEPEDA-VELAZQUEZ,M.ABBEY,D.MCLEOD,R.MARCELLUS, JRNL AUTH 2 M.MOHAMMED,D.ENSAN,D.PANAGOPOULOS,V.TRUSH,E.GIBSON,W.TEMPEL, JRNL AUTH 3 P.J.BROWN,C.H.ARROWSMITH,M.SCHAPIRA,R.AL-AWAR,M.VEDADI, JRNL AUTH 4 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL DISCOVERY OF SMALL MOLECULE ANTAGONISTS OF HUMAN JRNL TITL 2 RETINOBLASTOMA BINDING PROTEIN 4 (RBBP4) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 72452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.000 REMARK 3 FREE R VALUE TEST SET COUNT : 699 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6040 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.20000 REMARK 3 B22 (A**2) : -3.37000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.129 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.402 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6283 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5408 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8599 ; 1.380 ; 1.627 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12557 ; 1.276 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 780 ; 7.930 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 307 ;32.236 ;23.909 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 925 ;13.308 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.352 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 833 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7236 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1272 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7M40 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1000253387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73841 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.73500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6BW3 REMARK 200 REMARK 200 REMARK: HEXAGON SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG3350, 0.2N AMMONIUM ACETATE, REMARK 280 0.1M BIS-TRIS PH5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.92850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 GLU A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 GLU A 213 REMARK 465 GLU A 357 REMARK 465 ASP A 411 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 PRO A 414 REMARK 465 GLU A 415 REMARK 465 GLY A 416 REMARK 465 SER A 417 REMARK 465 VAL A 418 REMARK 465 ASP A 419 REMARK 465 PRO A 420 REMARK 465 GLU A 421 REMARK 465 GLY A 422 REMARK 465 GLN A 423 REMARK 465 GLY A 424 REMARK 465 SER A 425 REMARK 465 MET B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 LYS B 4 REMARK 465 GLU B 5 REMARK 465 ASP B 89 REMARK 465 ASP B 90 REMARK 465 ALA B 91 REMARK 465 GLN B 92 REMARK 465 PHE B 93 REMARK 465 ASP B 94 REMARK 465 ALA B 95 REMARK 465 SER B 96 REMARK 465 HIS B 97 REMARK 465 TYR B 98 REMARK 465 ASP B 99 REMARK 465 SER B 100 REMARK 465 GLU B 101 REMARK 465 LYS B 102 REMARK 465 GLY B 103 REMARK 465 GLU B 104 REMARK 465 PHE B 105 REMARK 465 GLY B 106 REMARK 465 GLY B 107 REMARK 465 PHE B 108 REMARK 465 GLY B 109 REMARK 465 SER B 110 REMARK 465 VAL B 111 REMARK 465 SER B 112 REMARK 465 PRO B 356 REMARK 465 GLU B 357 REMARK 465 ASP B 411 REMARK 465 GLU B 412 REMARK 465 ASP B 413 REMARK 465 PRO B 414 REMARK 465 GLU B 415 REMARK 465 GLY B 416 REMARK 465 SER B 417 REMARK 465 VAL B 418 REMARK 465 ASP B 419 REMARK 465 PRO B 420 REMARK 465 GLU B 421 REMARK 465 GLY B 422 REMARK 465 GLN B 423 REMARK 465 GLY B 424 REMARK 465 SER B 425 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 GLU A 14 CD OE1 OE2 REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 ILE A 23 CD1 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 ARG A 55 CD NE CZ NH1 NH2 REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 59 CD CE NZ REMARK 470 ASP A 89 CG OD1 OD2 REMARK 470 ASP A 90 CG OD1 OD2 REMARK 470 GLN A 92 CG CD OE1 NE2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 114 NZ REMARK 470 GLU A 116 OE1 OE2 REMARK 470 ILE A 117 CD1 REMARK 470 LYS A 120 NZ REMARK 470 LYS A 156 NZ REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 GLU A 166 CD OE1 OE2 REMARK 470 LYS A 212 CE NZ REMARK 470 LYS A 215 CD CE NZ REMARK 470 LYS A 264 CE NZ REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LYS A 349 CE NZ REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 SER A 355 OG REMARK 470 ASP A 358 CG OD1 OD2 REMARK 470 GLU A 360 CG CD OE1 OE2 REMARK 470 GLU A 406 CG CD OE1 OE2 REMARK 470 ASN A 410 CG OD1 ND2 REMARK 470 GLU B 14 CG CD OE1 OE2 REMARK 470 ASN B 18 CG OD1 ND2 REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 LYS B 25 CE NZ REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 LYS B 59 CE NZ REMARK 470 SER B 73 OG REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 GLU B 116 CD OE1 OE2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 ARG B 174 CD NE CZ NH1 NH2 REMARK 470 GLU B 213 CG CD OE1 OE2 REMARK 470 LYS B 215 CD CE NZ REMARK 470 LYS B 251 NZ REMARK 470 LYS B 264 CD CE NZ REMARK 470 LYS B 307 CD CE NZ REMARK 470 LEU B 308 CD1 CD2 REMARK 470 LYS B 317 NZ REMARK 470 LYS B 349 NZ REMARK 470 GLU B 353 CG CD OE1 OE2 REMARK 470 SER B 355 OG REMARK 470 ASP B 358 N CB CG OD1 OD2 REMARK 470 GLU B 360 CG CD OE1 OE2 REMARK 470 ASP B 361 CG OD1 OD2 REMARK 470 ASN B 410 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 91 142.57 -170.46 REMARK 500 ASN A 136 84.59 -159.96 REMARK 500 SER A 147 -19.08 94.94 REMARK 500 HIS A 200 6.47 83.48 REMARK 500 ASN A 305 82.91 -151.87 REMARK 500 SER A 315 -20.16 -175.58 REMARK 500 TRP A 388 0.70 81.73 REMARK 500 ASN A 397 -5.23 110.29 REMARK 500 ASP B 74 60.08 63.57 REMARK 500 ASN B 168 79.75 -115.65 REMARK 500 HIS B 200 6.58 80.49 REMARK 500 LYS B 212 77.00 -101.61 REMARK 500 LYS B 215 150.43 -46.55 REMARK 500 SER B 315 -22.48 175.94 REMARK 500 ALA B 359 -35.32 -150.93 REMARK 500 ASN B 397 -1.50 106.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 YQJ A 1000 REMARK 610 YQJ B 1000 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YQJ A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YQJ B 1000 DBREF 7M40 A 1 425 UNP Q09028 RBBP4_HUMAN 1 425 DBREF 7M40 B 1 425 UNP Q09028 RBBP4_HUMAN 1 425 SEQADV 7M40 MET A -17 UNP Q09028 INITIATING METHIONINE SEQADV 7M40 HIS A -16 UNP Q09028 EXPRESSION TAG SEQADV 7M40 HIS A -15 UNP Q09028 EXPRESSION TAG SEQADV 7M40 HIS A -14 UNP Q09028 EXPRESSION TAG SEQADV 7M40 HIS A -13 UNP Q09028 EXPRESSION TAG SEQADV 7M40 HIS A -12 UNP Q09028 EXPRESSION TAG SEQADV 7M40 HIS A -11 UNP Q09028 EXPRESSION TAG SEQADV 7M40 SER A -10 UNP Q09028 EXPRESSION TAG SEQADV 7M40 SER A -9 UNP Q09028 EXPRESSION TAG SEQADV 7M40 GLY A -8 UNP Q09028 EXPRESSION TAG SEQADV 7M40 ARG A -7 UNP Q09028 EXPRESSION TAG SEQADV 7M40 GLU A -6 UNP Q09028 EXPRESSION TAG SEQADV 7M40 ASN A -5 UNP Q09028 EXPRESSION TAG SEQADV 7M40 LEU A -4 UNP Q09028 EXPRESSION TAG SEQADV 7M40 TYR A -3 UNP Q09028 EXPRESSION TAG SEQADV 7M40 PHE A -2 UNP Q09028 EXPRESSION TAG SEQADV 7M40 GLN A -1 UNP Q09028 EXPRESSION TAG SEQADV 7M40 GLY A 0 UNP Q09028 EXPRESSION TAG SEQADV 7M40 MET B -17 UNP Q09028 INITIATING METHIONINE SEQADV 7M40 HIS B -16 UNP Q09028 EXPRESSION TAG SEQADV 7M40 HIS B -15 UNP Q09028 EXPRESSION TAG SEQADV 7M40 HIS B -14 UNP Q09028 EXPRESSION TAG SEQADV 7M40 HIS B -13 UNP Q09028 EXPRESSION TAG SEQADV 7M40 HIS B -12 UNP Q09028 EXPRESSION TAG SEQADV 7M40 HIS B -11 UNP Q09028 EXPRESSION TAG SEQADV 7M40 SER B -10 UNP Q09028 EXPRESSION TAG SEQADV 7M40 SER B -9 UNP Q09028 EXPRESSION TAG SEQADV 7M40 GLY B -8 UNP Q09028 EXPRESSION TAG SEQADV 7M40 ARG B -7 UNP Q09028 EXPRESSION TAG SEQADV 7M40 GLU B -6 UNP Q09028 EXPRESSION TAG SEQADV 7M40 ASN B -5 UNP Q09028 EXPRESSION TAG SEQADV 7M40 LEU B -4 UNP Q09028 EXPRESSION TAG SEQADV 7M40 TYR B -3 UNP Q09028 EXPRESSION TAG SEQADV 7M40 PHE B -2 UNP Q09028 EXPRESSION TAG SEQADV 7M40 GLN B -1 UNP Q09028 EXPRESSION TAG SEQADV 7M40 GLY B 0 UNP Q09028 EXPRESSION TAG SEQRES 1 A 443 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 443 LEU TYR PHE GLN GLY MET ALA ASP LYS GLU ALA ALA PHE SEQRES 3 A 443 ASP ASP ALA VAL GLU GLU ARG VAL ILE ASN GLU GLU TYR SEQRES 4 A 443 LYS ILE TRP LYS LYS ASN THR PRO PHE LEU TYR ASP LEU SEQRES 5 A 443 VAL MET THR HIS ALA LEU GLU TRP PRO SER LEU THR ALA SEQRES 6 A 443 GLN TRP LEU PRO ASP VAL THR ARG PRO GLU GLY LYS ASP SEQRES 7 A 443 PHE SER ILE HIS ARG LEU VAL LEU GLY THR HIS THR SER SEQRES 8 A 443 ASP GLU GLN ASN HIS LEU VAL ILE ALA SER VAL GLN LEU SEQRES 9 A 443 PRO ASN ASP ASP ALA GLN PHE ASP ALA SER HIS TYR ASP SEQRES 10 A 443 SER GLU LYS GLY GLU PHE GLY GLY PHE GLY SER VAL SER SEQRES 11 A 443 GLY LYS ILE GLU ILE GLU ILE LYS ILE ASN HIS GLU GLY SEQRES 12 A 443 GLU VAL ASN ARG ALA ARG TYR MET PRO GLN ASN PRO CYS SEQRES 13 A 443 ILE ILE ALA THR LYS THR PRO SER SER ASP VAL LEU VAL SEQRES 14 A 443 PHE ASP TYR THR LYS HIS PRO SER LYS PRO ASP PRO SER SEQRES 15 A 443 GLY GLU CYS ASN PRO ASP LEU ARG LEU ARG GLY HIS GLN SEQRES 16 A 443 LYS GLU GLY TYR GLY LEU SER TRP ASN PRO ASN LEU SER SEQRES 17 A 443 GLY HIS LEU LEU SER ALA SER ASP ASP HIS THR ILE CYS SEQRES 18 A 443 LEU TRP ASP ILE SER ALA VAL PRO LYS GLU GLY LYS VAL SEQRES 19 A 443 VAL ASP ALA LYS THR ILE PHE THR GLY HIS THR ALA VAL SEQRES 20 A 443 VAL GLU ASP VAL SER TRP HIS LEU LEU HIS GLU SER LEU SEQRES 21 A 443 PHE GLY SER VAL ALA ASP ASP GLN LYS LEU MET ILE TRP SEQRES 22 A 443 ASP THR ARG SER ASN ASN THR SER LYS PRO SER HIS SER SEQRES 23 A 443 VAL ASP ALA HIS THR ALA GLU VAL ASN CYS LEU SER PHE SEQRES 24 A 443 ASN PRO TYR SER GLU PHE ILE LEU ALA THR GLY SER ALA SEQRES 25 A 443 ASP LYS THR VAL ALA LEU TRP ASP LEU ARG ASN LEU LYS SEQRES 26 A 443 LEU LYS LEU HIS SER PHE GLU SER HIS LYS ASP GLU ILE SEQRES 27 A 443 PHE GLN VAL GLN TRP SER PRO HIS ASN GLU THR ILE LEU SEQRES 28 A 443 ALA SER SER GLY THR ASP ARG ARG LEU ASN VAL TRP ASP SEQRES 29 A 443 LEU SER LYS ILE GLY GLU GLU GLN SER PRO GLU ASP ALA SEQRES 30 A 443 GLU ASP GLY PRO PRO GLU LEU LEU PHE ILE HIS GLY GLY SEQRES 31 A 443 HIS THR ALA LYS ILE SER ASP PHE SER TRP ASN PRO ASN SEQRES 32 A 443 GLU PRO TRP VAL ILE CYS SER VAL SER GLU ASP ASN ILE SEQRES 33 A 443 MET GLN VAL TRP GLN MET ALA GLU ASN ILE TYR ASN ASP SEQRES 34 A 443 GLU ASP PRO GLU GLY SER VAL ASP PRO GLU GLY GLN GLY SEQRES 35 A 443 SER SEQRES 1 B 443 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 443 LEU TYR PHE GLN GLY MET ALA ASP LYS GLU ALA ALA PHE SEQRES 3 B 443 ASP ASP ALA VAL GLU GLU ARG VAL ILE ASN GLU GLU TYR SEQRES 4 B 443 LYS ILE TRP LYS LYS ASN THR PRO PHE LEU TYR ASP LEU SEQRES 5 B 443 VAL MET THR HIS ALA LEU GLU TRP PRO SER LEU THR ALA SEQRES 6 B 443 GLN TRP LEU PRO ASP VAL THR ARG PRO GLU GLY LYS ASP SEQRES 7 B 443 PHE SER ILE HIS ARG LEU VAL LEU GLY THR HIS THR SER SEQRES 8 B 443 ASP GLU GLN ASN HIS LEU VAL ILE ALA SER VAL GLN LEU SEQRES 9 B 443 PRO ASN ASP ASP ALA GLN PHE ASP ALA SER HIS TYR ASP SEQRES 10 B 443 SER GLU LYS GLY GLU PHE GLY GLY PHE GLY SER VAL SER SEQRES 11 B 443 GLY LYS ILE GLU ILE GLU ILE LYS ILE ASN HIS GLU GLY SEQRES 12 B 443 GLU VAL ASN ARG ALA ARG TYR MET PRO GLN ASN PRO CYS SEQRES 13 B 443 ILE ILE ALA THR LYS THR PRO SER SER ASP VAL LEU VAL SEQRES 14 B 443 PHE ASP TYR THR LYS HIS PRO SER LYS PRO ASP PRO SER SEQRES 15 B 443 GLY GLU CYS ASN PRO ASP LEU ARG LEU ARG GLY HIS GLN SEQRES 16 B 443 LYS GLU GLY TYR GLY LEU SER TRP ASN PRO ASN LEU SER SEQRES 17 B 443 GLY HIS LEU LEU SER ALA SER ASP ASP HIS THR ILE CYS SEQRES 18 B 443 LEU TRP ASP ILE SER ALA VAL PRO LYS GLU GLY LYS VAL SEQRES 19 B 443 VAL ASP ALA LYS THR ILE PHE THR GLY HIS THR ALA VAL SEQRES 20 B 443 VAL GLU ASP VAL SER TRP HIS LEU LEU HIS GLU SER LEU SEQRES 21 B 443 PHE GLY SER VAL ALA ASP ASP GLN LYS LEU MET ILE TRP SEQRES 22 B 443 ASP THR ARG SER ASN ASN THR SER LYS PRO SER HIS SER SEQRES 23 B 443 VAL ASP ALA HIS THR ALA GLU VAL ASN CYS LEU SER PHE SEQRES 24 B 443 ASN PRO TYR SER GLU PHE ILE LEU ALA THR GLY SER ALA SEQRES 25 B 443 ASP LYS THR VAL ALA LEU TRP ASP LEU ARG ASN LEU LYS SEQRES 26 B 443 LEU LYS LEU HIS SER PHE GLU SER HIS LYS ASP GLU ILE SEQRES 27 B 443 PHE GLN VAL GLN TRP SER PRO HIS ASN GLU THR ILE LEU SEQRES 28 B 443 ALA SER SER GLY THR ASP ARG ARG LEU ASN VAL TRP ASP SEQRES 29 B 443 LEU SER LYS ILE GLY GLU GLU GLN SER PRO GLU ASP ALA SEQRES 30 B 443 GLU ASP GLY PRO PRO GLU LEU LEU PHE ILE HIS GLY GLY SEQRES 31 B 443 HIS THR ALA LYS ILE SER ASP PHE SER TRP ASN PRO ASN SEQRES 32 B 443 GLU PRO TRP VAL ILE CYS SER VAL SER GLU ASP ASN ILE SEQRES 33 B 443 MET GLN VAL TRP GLN MET ALA GLU ASN ILE TYR ASN ASP SEQRES 34 B 443 GLU ASP PRO GLU GLY SER VAL ASP PRO GLU GLY GLN GLY SEQRES 35 B 443 SER HET YQJ A1000 22 HET YQJ B1000 23 HETNAM YQJ N~3~-{4-[3-(DIMETHYLAMINO)PYRROLIDIN-1-YL]-6,7- HETNAM 2 YQJ DIMETHOXYQUINAZOLIN-2-YL}-N~1~,N~1~-DIMETHYLPROPANE-1, HETNAM 3 YQJ 3-DIAMINE FORMUL 3 YQJ 2(C21 H34 N6 O2) FORMUL 5 HOH *334(H2 O) HELIX 1 AA1 PHE A 8 LEU A 31 1 24 HELIX 2 AA2 ASP A 94 ASP A 99 5 6 HELIX 3 AA3 THR A 155 HIS A 157 5 3 HELIX 4 AA4 SER A 348 ILE A 350 5 3 HELIX 5 AA5 SER A 355 PRO A 356 5 2 HELIX 6 AA6 ASP A 358 GLU A 360 5 3 HELIX 7 AA7 ALA A 405 ASN A 410 1 6 HELIX 8 AA8 ALA B 7 LEU B 31 1 25 HELIX 9 AA9 THR B 155 HIS B 157 5 3 HELIX 10 AB1 SER B 348 ILE B 350 5 3 HELIX 11 AB2 ALA B 405 ASN B 410 1 6 SHEET 1 AA1 4 TYR A 32 ALA A 39 0 SHEET 2 AA1 4 ILE A 398 MET A 404 -1 O MET A 399 N HIS A 38 SHEET 3 AA1 4 VAL A 389 SER A 394 -1 N SER A 392 O GLN A 400 SHEET 4 AA1 4 ILE A 377 TRP A 382 -1 N SER A 378 O VAL A 393 SHEET 1 AA2 4 GLN A 48 THR A 54 0 SHEET 2 AA2 4 PHE A 61 GLY A 69 -1 O VAL A 67 N GLN A 48 SHEET 3 AA2 4 ASN A 77 PRO A 87 -1 O VAL A 80 N LEU A 68 SHEET 4 AA2 4 ILE A 115 HIS A 123 -1 O GLU A 116 N SER A 83 SHEET 1 AA3 5 ARG A 129 MET A 133 0 SHEET 2 AA3 5 ASN A 136 LYS A 143 -1 O ILE A 139 N MET A 133 SHEET 3 AA3 5 VAL A 149 ASP A 153 -1 O PHE A 152 N ILE A 140 SHEET 4 AA3 5 LEU A 171 ARG A 174 -1 O LEU A 173 N VAL A 149 SHEET 5 AA3 5 LYS A 215 ASP A 218 1 O VAL A 217 N ARG A 172 SHEET 1 AA4 4 LEU A 183 TRP A 185 0 SHEET 2 AA4 4 HIS A 192 ALA A 196 -1 O LEU A 194 N SER A 184 SHEET 3 AA4 4 ILE A 202 ASP A 206 -1 O TRP A 205 N LEU A 193 SHEET 4 AA4 4 THR A 221 PHE A 223 -1 O PHE A 223 N ILE A 202 SHEET 1 AA5 4 VAL A 230 TRP A 235 0 SHEET 2 AA5 4 LEU A 242 ALA A 247 -1 O GLY A 244 N SER A 234 SHEET 3 AA5 4 LYS A 251 ASP A 256 -1 O MET A 253 N SER A 245 SHEET 4 AA5 4 HIS A 267 ASP A 270 -1 O VAL A 269 N LEU A 252 SHEET 1 AA6 4 VAL A 276 PHE A 281 0 SHEET 2 AA6 4 ILE A 288 SER A 293 -1 O ALA A 290 N SER A 280 SHEET 3 AA6 4 THR A 297 ASP A 302 -1 O TRP A 301 N LEU A 289 SHEET 4 AA6 4 HIS A 311 GLU A 314 -1 O PHE A 313 N VAL A 298 SHEET 1 AA7 4 ILE A 320 TRP A 325 0 SHEET 2 AA7 4 ILE A 332 GLY A 337 -1 O ALA A 334 N GLN A 324 SHEET 3 AA7 4 LEU A 342 ASP A 346 -1 O TRP A 345 N LEU A 333 SHEET 4 AA7 4 LEU A 366 HIS A 370 -1 O PHE A 368 N VAL A 344 SHEET 1 AA8 4 TYR B 32 ALA B 39 0 SHEET 2 AA8 4 ILE B 398 MET B 404 -1 O MET B 399 N HIS B 38 SHEET 3 AA8 4 VAL B 389 SER B 394 -1 N ILE B 390 O TRP B 402 SHEET 4 AA8 4 ILE B 377 TRP B 382 -1 N SER B 381 O CYS B 391 SHEET 1 AA9 4 ALA B 47 TRP B 49 0 SHEET 2 AA9 4 PHE B 61 GLY B 69 -1 O VAL B 67 N GLN B 48 SHEET 3 AA9 4 ASN B 77 PRO B 87 -1 O VAL B 80 N LEU B 68 SHEET 4 AA9 4 ILE B 115 HIS B 123 -1 O GLU B 116 N SER B 83 SHEET 1 AB1 5 ARG B 129 MET B 133 0 SHEET 2 AB1 5 ASN B 136 LYS B 143 -1 O ALA B 141 N ARG B 131 SHEET 3 AB1 5 VAL B 149 ASP B 153 -1 O PHE B 152 N ILE B 140 SHEET 4 AB1 5 LEU B 171 ARG B 174 -1 O LEU B 173 N VAL B 149 SHEET 5 AB1 5 VAL B 216 ASP B 218 1 O VAL B 217 N ARG B 174 SHEET 1 AB2 4 LEU B 183 TRP B 185 0 SHEET 2 AB2 4 HIS B 192 ALA B 196 -1 O LEU B 194 N SER B 184 SHEET 3 AB2 4 ILE B 202 ASP B 206 -1 O TRP B 205 N LEU B 193 SHEET 4 AB2 4 THR B 221 PHE B 223 -1 O PHE B 223 N ILE B 202 SHEET 1 AB3 4 VAL B 230 TRP B 235 0 SHEET 2 AB3 4 LEU B 242 ALA B 247 -1 O GLY B 244 N SER B 234 SHEET 3 AB3 4 LYS B 251 ASP B 256 -1 O TRP B 255 N PHE B 243 SHEET 4 AB3 4 HIS B 267 ASP B 270 -1 O VAL B 269 N LEU B 252 SHEET 1 AB4 4 VAL B 276 PHE B 281 0 SHEET 2 AB4 4 ILE B 288 SER B 293 -1 O ALA B 290 N SER B 280 SHEET 3 AB4 4 THR B 297 ASP B 302 -1 O TRP B 301 N LEU B 289 SHEET 4 AB4 4 HIS B 311 GLU B 314 -1 O PHE B 313 N VAL B 298 SHEET 1 AB5 4 ILE B 320 TRP B 325 0 SHEET 2 AB5 4 ILE B 332 GLY B 337 -1 O ALA B 334 N GLN B 324 SHEET 3 AB5 4 LEU B 342 ASP B 346 -1 O TRP B 345 N LEU B 333 SHEET 4 AB5 4 LEU B 366 HIS B 370 -1 O PHE B 368 N VAL B 344 SITE 1 AC1 8 ARG A 129 TYR A 181 GLU A 231 ASN A 277 SITE 2 AC1 8 GLU A 319 PHE A 321 SER A 378 HOH A1256 SITE 1 AC2 8 LEU B 45 ARG B 129 TYR B 181 GLU B 231 SITE 2 AC2 8 ASN B 277 GLU B 319 PHE B 321 SER B 378 CRYST1 75.820 59.857 102.011 90.00 93.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013189 0.000000 0.000860 0.00000 SCALE2 0.000000 0.016706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009824 0.00000