HEADER REPLICATION 21-MAR-21 7M43 TITLE DNA POLYMERASE LAMBDA, TTP:AT CA2+ GROUND STATE TERNARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 5 KAPPA; COMPND 6 EC: 2.7.7.7,4.2.99.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'); COMPND 15 CHAIN: P; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630 KEYWDS TIME-LAPSE CRYSTALLOGRAPHY, DNA POLYMERASE LAMBDA, DOUBLE STRAND KEYWDS 2 BREAK REPAIR, DNA SYNTHESIS FIDELITY, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR J.A.JAMSEN,S.H.WILSON REVDAT 2 18-OCT-23 7M43 1 REMARK REVDAT 1 06-JUL-22 7M43 0 JRNL AUTH J.A.JAMSEN,D.D.SHOCK,S.H.WILSON JRNL TITL WATCHING RIGHT AND WRONG NUCLEOTIDE INSERTION CAPTURES JRNL TITL 2 HIDDEN POLYMERASE FIDELITY CHECKPOINTS. JRNL REF NAT COMMUN V. 13 3193 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35680862 JRNL DOI 10.1038/S41467-022-30141-W REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.15.2-3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 34913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.0230 - 4.5188 0.99 2971 156 0.1943 0.2083 REMARK 3 2 4.5188 - 3.5905 1.00 2834 148 0.1613 0.1842 REMARK 3 3 3.5905 - 3.1378 1.00 2799 147 0.1758 0.2206 REMARK 3 4 3.1378 - 2.8514 0.98 2754 146 0.2219 0.2782 REMARK 3 5 2.8514 - 2.6473 0.99 2763 145 0.2329 0.2884 REMARK 3 6 2.6473 - 2.4914 1.00 2781 146 0.2069 0.3230 REMARK 3 7 2.4914 - 2.3667 1.00 2759 146 0.1973 0.2126 REMARK 3 8 2.3667 - 2.2638 1.00 2753 144 0.1904 0.2254 REMARK 3 9 2.2638 - 2.1767 1.00 2771 146 0.1834 0.2510 REMARK 3 10 2.1767 - 2.1016 1.00 2726 144 0.1965 0.2368 REMARK 3 11 2.1016 - 2.0360 0.98 2724 145 0.2203 0.2509 REMARK 3 12 2.0360 - 1.9780 0.92 2529 136 0.2468 0.2866 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 251 THROUGH 324) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4305 -30.4488 24.8316 REMARK 3 T TENSOR REMARK 3 T11: 0.5552 T22: 0.7213 REMARK 3 T33: 0.5392 T12: 0.2057 REMARK 3 T13: -0.1168 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 0.0789 L22: 0.6825 REMARK 3 L33: 0.4819 L12: 0.0832 REMARK 3 L13: -0.1005 L23: -0.3088 REMARK 3 S TENSOR REMARK 3 S11: -0.2364 S12: -0.5954 S13: 0.1588 REMARK 3 S21: 0.4366 S22: 0.2161 S23: -0.7310 REMARK 3 S31: 0.5078 S32: 0.6356 S33: 0.0029 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 325 THROUGH 535) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8274 -6.0007 9.5458 REMARK 3 T TENSOR REMARK 3 T11: 0.2326 T22: 0.2247 REMARK 3 T33: 0.2706 T12: 0.0115 REMARK 3 T13: 0.0070 T23: -0.0307 REMARK 3 L TENSOR REMARK 3 L11: 1.8119 L22: 1.0648 REMARK 3 L33: 1.3613 L12: 0.1021 REMARK 3 L13: -0.9048 L23: 0.0752 REMARK 3 S TENSOR REMARK 3 S11: 0.1479 S12: -0.1071 S13: 0.2583 REMARK 3 S21: 0.0666 S22: 0.0754 S23: -0.0608 REMARK 3 S31: -0.1634 S32: 0.0877 S33: 0.0691 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 536 THROUGH 575) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6838 -4.6405 31.4626 REMARK 3 T TENSOR REMARK 3 T11: 0.4712 T22: 0.5547 REMARK 3 T33: 0.4056 T12: -0.0126 REMARK 3 T13: 0.0261 T23: -0.1536 REMARK 3 L TENSOR REMARK 3 L11: 2.1133 L22: 0.8638 REMARK 3 L33: 0.6724 L12: -0.6025 REMARK 3 L13: 0.4398 L23: -0.2351 REMARK 3 S TENSOR REMARK 3 S11: 0.3321 S12: -0.5487 S13: -0.2751 REMARK 3 S21: 0.1635 S22: -0.1347 S23: 0.3118 REMARK 3 S31: -0.1683 S32: 0.2378 S33: 0.0575 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2251 -26.5007 26.5093 REMARK 3 T TENSOR REMARK 3 T11: 0.5676 T22: 0.4955 REMARK 3 T33: 0.4395 T12: -0.0333 REMARK 3 T13: 0.1242 T23: 0.1202 REMARK 3 L TENSOR REMARK 3 L11: 0.0524 L22: 0.0201 REMARK 3 L33: 0.0225 L12: 0.0322 REMARK 3 L13: 0.0290 L23: 0.0163 REMARK 3 S TENSOR REMARK 3 S11: 0.2455 S12: -0.0478 S13: 0.2358 REMARK 3 S21: -0.2276 S22: -0.0060 S23: 0.3519 REMARK 3 S31: -0.0059 S32: -0.5216 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 5 THROUGH 11) REMARK 3 ORIGIN FOR THE GROUP (A): -26.2558 -9.4023 12.4174 REMARK 3 T TENSOR REMARK 3 T11: 0.2322 T22: 0.1351 REMARK 3 T33: 0.2358 T12: -0.0062 REMARK 3 T13: 0.0009 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.2173 L22: 0.2453 REMARK 3 L33: 0.1393 L12: 0.1449 REMARK 3 L13: -0.0209 L23: 0.1292 REMARK 3 S TENSOR REMARK 3 S11: 0.0253 S12: 0.0546 S13: -0.0389 REMARK 3 S21: 0.0101 S22: -0.0388 S23: 0.1098 REMARK 3 S31: 0.0773 S32: -0.1408 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'P' AND RESID 1 THROUGH 6) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8984 -15.1540 8.5901 REMARK 3 T TENSOR REMARK 3 T11: 0.2630 T22: 0.2531 REMARK 3 T33: 0.2384 T12: -0.0162 REMARK 3 T13: 0.0009 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 0.1535 L22: 0.2008 REMARK 3 L33: 0.0376 L12: -0.1678 REMARK 3 L13: 0.0665 L23: -0.0599 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.1556 S13: 0.0409 REMARK 3 S21: 0.1983 S22: -0.0068 S23: -0.0213 REMARK 3 S31: -0.0080 S32: -0.0033 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2730 -29.5118 28.4490 REMARK 3 T TENSOR REMARK 3 T11: 0.4754 T22: 0.4533 REMARK 3 T33: 0.2069 T12: 0.0383 REMARK 3 T13: 0.0415 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 1.5621 L22: 1.3426 REMARK 3 L33: 3.8760 L12: -0.0273 REMARK 3 L13: -0.5316 L23: 2.2364 REMARK 3 S TENSOR REMARK 3 S11: 0.4511 S12: -0.5939 S13: 0.0483 REMARK 3 S21: 0.4013 S22: 0.2612 S23: 0.0083 REMARK 3 S31: 0.1141 S32: 0.5362 S33: 0.3296 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1001310088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35088 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.978 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 3UPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80-95MM BICINE PH 8.3, 0.3M NA-K REMARK 280 TARTRATE, 18-22.5% POLYPURE PEG, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.99400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.19300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.32650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.19300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.99400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.32650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 ALA A 249 REMARK 465 THR A 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 252 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 ILE A 256 CG1 CG2 CD1 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 LYS A 259 CE NZ REMARK 470 GLU A 261 CD OE1 OE2 REMARK 470 LEU A 263 CD1 CD2 REMARK 470 LYS A 265 CD CE NZ REMARK 470 LYS A 273 CD CE NZ REMARK 470 LYS A 281 CE NZ REMARK 470 LEU A 286 CD1 CD2 REMARK 470 LYS A 287 CB CG CD CE NZ REMARK 470 PHE A 289 CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 291 CE NZ REMARK 470 VAL A 293 CG1 CG2 REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 ILE A 302 CD1 REMARK 470 ILE A 305 CD1 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 ARG A 308 NE CZ NH1 NH2 REMARK 470 GLU A 311 OE1 OE2 REMARK 470 ILE A 313 CG1 CG2 CD1 REMARK 470 ILE A 314 CD1 REMARK 470 ILE A 316 CD1 REMARK 470 GLU A 318 OE1 OE2 REMARK 470 LEU A 322 CD1 CD2 REMARK 470 ARG A 323 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 324 CD CE NZ REMARK 470 LEU A 325 CD1 CD2 REMARK 470 GLU A 390 CG CD OE1 OE2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 LYS A 422 CE NZ REMARK 470 ASP A 436 OD1 OD2 REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 SER A 439 OG REMARK 470 ARG A 441 CB CG CD NE CZ NH1 NH2 REMARK 470 ILE A 443 CB CG1 CG2 CD1 REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 449 CG OD1 OD2 REMARK 470 ARG A 452 CD NE CZ NH1 NH2 REMARK 470 GLN A 453 CG CD OE1 NE2 REMARK 470 GLU A 454 CG CD OE1 OE2 REMARK 470 LYS A 463 CE NZ REMARK 470 GLU A 470 CD OE1 OE2 REMARK 470 LYS A 521 NZ REMARK 470 THR A 534 OG1 CG2 REMARK 470 VAL A 537 CG1 CG2 REMARK 470 THR A 540 CB OG1 CG2 REMARK 470 HIS A 541 CG ND1 CD2 CE1 NE2 REMARK 470 CYS A 543 SG REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 VAL A 545 CB CG1 CG2 REMARK 470 LYS A 557 CD CE NZ REMARK 470 ARG A 568 CZ NH1 NH2 REMARK 470 GLU A 569 CD OE1 OE2 REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 470 TRP A 575 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 575 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC P 1 O3' DC P 1 C3' -0.041 REMARK 500 DG D 1 P DG D 1 OP3 -0.131 REMARK 500 DG D 1 P DG D 1 OP3 -0.129 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 2 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG T 11 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 415 -136.45 -114.10 REMARK 500 ARG A 438 -43.76 -140.84 REMARK 500 ARG A 438 -42.34 -140.84 REMARK 500 SER A 439 90.02 -68.31 REMARK 500 HIS A 440 140.03 177.45 REMARK 500 ARG A 441 -69.18 108.53 REMARK 500 ALA A 535 34.88 70.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 O REMARK 620 2 ILE A 302 O 90.2 REMARK 620 3 HOH A 785 O 66.0 129.9 REMARK 620 4 DC D 3 OP1 143.7 97.1 82.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 339 O REMARK 620 2 ILE A 341 O 95.5 REMARK 620 3 ALA A 344 O 92.8 86.6 REMARK 620 4 HOH A 711 O 89.2 94.4 177.7 REMARK 620 5 DA P 5 OP1 165.9 98.0 92.0 85.8 REMARK 620 6 HOH P 104 O 77.8 171.8 89.1 90.3 89.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 429 OD2 98.3 REMARK 620 3 TTP A 606 O1A 81.2 87.8 REMARK 620 4 TTP A 606 O1B 157.9 97.0 83.5 REMARK 620 5 TTP A 606 O1B 160.3 92.4 82.8 4.6 REMARK 620 6 TTP A 606 O3G 87.9 163.9 78.4 73.4 77.7 REMARK 620 7 HOH A 717 O 115.3 93.2 163.1 79.6 80.3 97.6 REMARK 620 8 HOH A 813 O 81.7 174.5 97.7 84.6 89.2 21.4 81.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 427 OD2 48.7 REMARK 620 3 ASP A 429 OD1 78.6 118.2 REMARK 620 4 ASP A 490 OD2 136.6 106.2 90.0 REMARK 620 5 TTP A 606 O1A 66.4 95.4 88.9 156.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA T 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 731 O REMARK 620 2 HOH A 839 O 159.7 REMARK 620 3 DT T 10 O2 100.4 79.0 REMARK 620 4 HOH T 231 O 71.5 100.3 154.5 REMARK 620 5 HOH P 120 O 113.4 86.7 96.7 108.7 REMARK 620 N 1 2 3 4 DBREF 7M43 A 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 7M43 T 1 11 PDB 7M43 7M43 1 11 DBREF 7M43 P 1 6 PDB 7M43 7M43 1 6 DBREF 7M43 D 1 4 PDB 7M43 7M43 1 4 SEQADV 7M43 LYS A 463 UNP Q9UGP5 SER 463 CONFLICT SEQADV 7M43 GLY A 464 UNP Q9UGP5 GLN 464 CONFLICT SEQADV 7M43 A UNP Q9UGP5 GLU 466 DELETION SEQADV 7M43 A UNP Q9UGP5 ASN 467 DELETION SEQADV 7M43 A UNP Q9UGP5 GLY 468 DELETION SEQADV 7M43 A UNP Q9UGP5 GLN 469 DELETION SEQADV 7M43 A UNP Q9UGP5 GLN 470 DELETION SEQADV 7M43 THR A 471 UNP Q9UGP5 GLN 471 CONFLICT SEQRES 1 A 329 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 A 329 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 A 329 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 A 329 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 A 329 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 A 329 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 A 329 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 A 329 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 A 329 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 A 329 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 A 329 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 A 329 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 A 329 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 A 329 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 A 329 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 A 329 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 A 329 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 A 329 LYS GLY GLU THR LYS TYR LEU GLY VAL CYS ARG LEU PRO SEQRES 19 A 329 GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE ILE VAL SEQRES 20 A 329 VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU TYR PHE SEQRES 21 A 329 THR GLY SER ALA HIS PHE ASN ARG SER MET ARG ALA LEU SEQRES 22 A 329 ALA LYS THR LYS GLY MET SER LEU SER GLU HIS ALA LEU SEQRES 23 A 329 SER THR ALA VAL VAL ARG ASN THR HIS GLY CYS LYS VAL SEQRES 24 A 329 GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU LYS ASP SEQRES 25 A 329 VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU PRO ALA SEQRES 26 A 329 GLU ARG ASP TRP SEQRES 1 T 11 DC DG DG DC DA DG DT DA DC DT DG SEQRES 1 P 6 DC DA DG DT DA DC SEQRES 1 D 4 DG DC DC DG HET CA A 601 1 HET NA A 602 1 HET NA A 603 1 HET NA A 604 1 HET NA A 605 1 HET TTP A 606 38 HET EDO A 607 4 HET EDO A 608 4 HET EDO A 609 4 HET EDO A 610 4 HET GOL A 611 6 HET NA T 101 1 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CA CA 2+ FORMUL 6 NA 5(NA 1+) FORMUL 10 TTP C10 H17 N2 O14 P3 FORMUL 11 EDO 4(C2 H6 O2) FORMUL 15 GOL C3 H8 O3 FORMUL 17 HOH *244(H2 O) HELIX 1 AA1 ASN A 253 GLN A 270 1 18 HELIX 2 AA2 ASP A 272 PHE A 289 1 18 HELIX 3 AA3 SER A 295 SER A 301 1 7 HELIX 4 AA4 GLY A 306 GLY A 320 1 15 HELIX 5 AA5 LEU A 322 ILE A 328 5 7 HELIX 6 AA6 SER A 331 ASN A 340 1 10 HELIX 7 AA7 GLY A 345 GLN A 355 1 11 HELIX 8 AA8 SER A 359 ALA A 367 1 9 HELIX 9 AA9 THR A 370 HIS A 379 1 10 HELIX 10 AB1 HIS A 379 LEU A 384 1 6 HELIX 11 AB2 ARG A 389 ASN A 407 1 19 HELIX 12 AB3 CYS A 415 ARG A 420 1 6 HELIX 13 AB4 SER A 439 GLU A 454 1 16 HELIX 14 AB5 PRO A 495 SER A 497 5 3 HELIX 15 AB6 GLU A 498 GLY A 508 1 11 HELIX 16 AB7 SER A 509 LYS A 523 1 15 HELIX 17 AB8 THR A 555 LEU A 563 1 9 HELIX 18 AB9 GLU A 569 ARG A 573 5 5 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 ALA A 414 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 AA2 5 ARG A 487 VAL A 493 1 O ASP A 490 N VAL A 428 SHEET 4 AA2 5 LYS A 472 CYS A 477 -1 N TYR A 473 O ILE A 491 SHEET 5 AA2 5 LEU A 457 LYS A 463 -1 N LEU A 461 O LEU A 474 SHEET 1 AA3 3 MET A 525 LEU A 527 0 SHEET 2 AA3 3 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 3 AA3 3 ARG A 549 LEU A 551 -1 O LEU A 551 N LEU A 532 SHEET 1 AA4 2 VAL A 537 ARG A 538 0 SHEET 2 AA4 2 LYS A 544 GLY A 546 -1 O VAL A 545 N VAL A 537 LINK O CYS A 300 NA NA A 604 1555 1555 3.15 LINK O ILE A 302 NA NA A 604 1555 1555 2.21 LINK O SER A 339 NA NA A 603 1555 1555 2.35 LINK O ILE A 341 NA NA A 603 1555 1555 2.50 LINK O ALA A 344 NA NA A 603 1555 1555 2.25 LINK OD1 ASP A 427 CA CA A 601 1555 1555 2.35 LINK OD1 ASP A 427 NA NA A 602 1555 1555 2.88 LINK OD2 ASP A 427 NA NA A 602 1555 1555 2.35 LINK OD2 ASP A 429 CA CA A 601 1555 1555 2.26 LINK OD1 ASP A 429 NA NA A 602 1555 1555 2.45 LINK OD2 ASP A 490 NA NA A 602 1555 1555 2.55 LINK CA CA A 601 O1A TTP A 606 1555 1555 2.35 LINK CA CA A 601 O1BATTP A 606 1555 1555 2.44 LINK CA CA A 601 O1BBTTP A 606 1555 1555 2.17 LINK CA CA A 601 O3GBTTP A 606 1555 1555 2.45 LINK CA CA A 601 O HOH A 717 1555 1555 2.53 LINK CA CA A 601 O AHOH A 813 1555 1555 2.31 LINK NA NA A 602 O1A TTP A 606 1555 1555 2.71 LINK NA NA A 603 O HOH A 711 1555 1555 2.45 LINK NA NA A 603 OP1 DA P 5 1555 1555 2.36 LINK NA NA A 603 O HOH P 104 1555 1555 2.56 LINK NA NA A 604 O HOH A 785 1555 1555 2.24 LINK NA NA A 604 OP1 DC D 3 1555 1555 2.83 LINK O HOH A 731 NA NA T 101 4445 1555 2.86 LINK O HOH A 839 NA NA T 101 1555 1555 3.18 LINK O2 DT T 10 NA NA T 101 1555 1555 2.60 LINK NA NA T 101 O HOH T 231 1555 1555 2.60 LINK NA NA T 101 O HOH P 120 1555 1555 2.44 CISPEP 1 GLY A 508 SER A 509 0 6.15 CRYST1 55.988 62.653 140.386 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017861 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007123 0.00000