HEADER REPLICATION 21-MAR-21 7M44 TITLE DNA POLYMERASE LAMBDA, TTP:AT MG2+ REACTION STATE TERNARY COMPLEX, 90 TITLE 2 SEC COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 5 KAPPA; COMPND 6 EC: 2.7.7.7,4.2.99.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*AP*GP*TP*AP*CP*T)-3'); COMPND 15 CHAIN: P; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630 KEYWDS TIME-LAPSE CRYSTALLOGRAPHY, DNA POLYMERASE LAMBDA, DOUBLE STRAND KEYWDS 2 BREAK REPAIR, DNA SYNTHESIS FIDELITY, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR J.A.JAMSEN,S.H.WILSON REVDAT 2 18-OCT-23 7M44 1 REMARK REVDAT 1 06-JUL-22 7M44 0 JRNL AUTH J.A.JAMSEN,D.D.SHOCK,S.H.WILSON JRNL TITL WATCHING RIGHT AND WRONG NUCLEOTIDE INSERTION CAPTURES JRNL TITL 2 HIDDEN POLYMERASE FIDELITY CHECKPOINTS. JRNL REF NAT COMMUN V. 13 3193 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35680862 JRNL DOI 10.1038/S41467-022-30141-W REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 38868 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 1896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.8850 - 4.5689 0.99 2833 140 0.1994 0.2201 REMARK 3 2 4.5689 - 3.6319 0.99 2722 149 0.1567 0.2040 REMARK 3 3 3.6319 - 3.1744 1.00 2715 133 0.1752 0.1919 REMARK 3 4 3.1744 - 2.8848 0.96 2569 137 0.2063 0.2141 REMARK 3 5 2.8848 - 2.6784 0.94 2505 120 0.2175 0.2536 REMARK 3 6 2.6784 - 2.5208 0.97 2599 131 0.2116 0.2462 REMARK 3 7 2.5208 - 2.3947 0.98 2585 131 0.2174 0.2582 REMARK 3 8 2.3947 - 2.2906 0.99 2644 145 0.2083 0.2641 REMARK 3 9 2.2906 - 2.2025 1.00 2649 134 0.1983 0.2331 REMARK 3 10 2.2025 - 2.1265 1.00 2652 133 0.2034 0.2502 REMARK 3 11 2.1265 - 2.0601 1.00 2632 142 0.2103 0.2386 REMARK 3 12 2.0601 - 2.0012 1.00 2626 133 0.2075 0.2644 REMARK 3 13 2.0012 - 1.9486 1.00 2632 130 0.2309 0.2671 REMARK 3 14 1.9486 - 1.9011 0.98 2609 138 0.3365 0.3577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 251 THROUGH 330) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4512 -30.3982 23.7078 REMARK 3 T TENSOR REMARK 3 T11: 0.5689 T22: 0.6579 REMARK 3 T33: 0.6286 T12: 0.1607 REMARK 3 T13: -0.1090 T23: 0.0890 REMARK 3 L TENSOR REMARK 3 L11: 1.1740 L22: 0.8492 REMARK 3 L33: 1.0015 L12: -0.1349 REMARK 3 L13: -0.6111 L23: -0.2136 REMARK 3 S TENSOR REMARK 3 S11: -0.1080 S12: -0.6612 S13: -0.3116 REMARK 3 S21: 0.4484 S22: 0.1715 S23: -0.6113 REMARK 3 S31: 0.6906 S32: 0.6381 S33: 0.0062 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 331 THROUGH 534) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8386 -5.2557 9.5105 REMARK 3 T TENSOR REMARK 3 T11: 0.2656 T22: 0.2386 REMARK 3 T33: 0.2894 T12: 0.0199 REMARK 3 T13: -0.0155 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 2.5611 L22: 1.2327 REMARK 3 L33: 1.6289 L12: 0.0352 REMARK 3 L13: -1.1607 L23: 0.0807 REMARK 3 S TENSOR REMARK 3 S11: 0.1610 S12: -0.1690 S13: 0.3565 REMARK 3 S21: 0.1028 S22: 0.0057 S23: -0.0130 REMARK 3 S31: -0.2264 S32: 0.0442 S33: 0.1727 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 535 THROUGH 575) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9705 -2.2852 31.8564 REMARK 3 T TENSOR REMARK 3 T11: 0.5180 T22: 0.6995 REMARK 3 T33: 0.3445 T12: -0.0347 REMARK 3 T13: 0.0023 T23: -0.1969 REMARK 3 L TENSOR REMARK 3 L11: 2.7309 L22: 1.5449 REMARK 3 L33: 1.2736 L12: -0.1753 REMARK 3 L13: -0.4310 L23: 0.1996 REMARK 3 S TENSOR REMARK 3 S11: 0.1520 S12: -0.8313 S13: 0.1829 REMARK 3 S21: 0.3374 S22: 0.0928 S23: -0.1147 REMARK 3 S31: -0.3938 S32: 0.8864 S33: 0.6125 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0361 -26.0376 26.6451 REMARK 3 T TENSOR REMARK 3 T11: 0.5004 T22: 0.6508 REMARK 3 T33: 0.4730 T12: 0.0174 REMARK 3 T13: 0.0922 T23: 0.2465 REMARK 3 L TENSOR REMARK 3 L11: 0.2651 L22: 0.0572 REMARK 3 L33: 0.0872 L12: 0.0194 REMARK 3 L13: 0.0377 L23: 0.0197 REMARK 3 S TENSOR REMARK 3 S11: 0.2186 S12: -0.1452 S13: 0.1610 REMARK 3 S21: 0.1738 S22: 0.2703 S23: 0.7060 REMARK 3 S31: -0.2920 S32: -0.4681 S33: -0.0440 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 5 THROUGH 11) REMARK 3 ORIGIN FOR THE GROUP (A): -26.6570 -9.1894 9.9528 REMARK 3 T TENSOR REMARK 3 T11: 0.3289 T22: 0.2500 REMARK 3 T33: 0.3365 T12: 0.0089 REMARK 3 T13: -0.0155 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 0.1327 L22: 0.2539 REMARK 3 L33: 0.1432 L12: 0.1117 REMARK 3 L13: 0.0636 L23: 0.1881 REMARK 3 S TENSOR REMARK 3 S11: 0.0485 S12: -0.0021 S13: 0.0554 REMARK 3 S21: 0.1256 S22: -0.0096 S23: 0.1961 REMARK 3 S31: -0.0621 S32: 0.2697 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'P' AND RESID 1 THROUGH 6) REMARK 3 ORIGIN FOR THE GROUP (A): -23.6658 -14.1873 9.1403 REMARK 3 T TENSOR REMARK 3 T11: 0.3033 T22: 0.2598 REMARK 3 T33: 0.2588 T12: -0.0076 REMARK 3 T13: -0.0008 T23: -0.0431 REMARK 3 L TENSOR REMARK 3 L11: 0.0668 L22: 0.1185 REMARK 3 L33: 0.0029 L12: -0.0326 REMARK 3 L13: -0.0131 L23: -0.0008 REMARK 3 S TENSOR REMARK 3 S11: 0.0967 S12: -0.1951 S13: -0.1199 REMARK 3 S21: -0.0066 S22: -0.1309 S23: -0.1479 REMARK 3 S31: -0.2032 S32: -0.1617 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5604 -28.4428 29.4558 REMARK 3 T TENSOR REMARK 3 T11: 0.5922 T22: 0.5091 REMARK 3 T33: 0.3467 T12: -0.0165 REMARK 3 T13: 0.0620 T23: 0.0853 REMARK 3 L TENSOR REMARK 3 L11: 1.0733 L22: 1.0971 REMARK 3 L33: 3.1342 L12: 0.5473 REMARK 3 L13: 0.8432 L23: 1.8517 REMARK 3 S TENSOR REMARK 3 S11: 0.4485 S12: -0.7318 S13: -0.2471 REMARK 3 S21: 0.5773 S22: 0.3232 S23: 0.0748 REMARK 3 S31: 0.3262 S32: 0.3514 S33: 0.3884 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1001310089. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39479 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.83600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 3UPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80-95MM BICINE PH 8.3, 0.3M NA-K REMARK 280 TARTRATE, 18-22.5% POLYPURE PEG, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.02100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.11400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.17800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.11400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.02100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.17800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 ALA A 249 REMARK 465 THR A 250 REMARK 465 ASN A 539 REMARK 465 THR A 540 REMARK 465 HIS A 541 REMARK 465 GLY A 542 REMARK 465 CYS A 543 REMARK 465 LYS A 544 REMARK 465 VAL A 545 REMARK 465 GLY A 546 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 252 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 ILE A 256 CG1 CG2 CD1 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 GLU A 261 CD OE1 OE2 REMARK 470 LEU A 263 CD1 CD2 REMARK 470 LYS A 265 CD CE NZ REMARK 470 LYS A 273 CD CE NZ REMARK 470 LEU A 286 CD1 CD2 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 PHE A 289 CE1 CE2 CZ REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 VAL A 293 CG1 CG2 REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 ILE A 302 CD1 REMARK 470 LYS A 307 CD CE NZ REMARK 470 ARG A 308 NE CZ NH1 NH2 REMARK 470 ILE A 313 CG1 CG2 CD1 REMARK 470 ILE A 314 CD1 REMARK 470 ILE A 316 CD1 REMARK 470 LEU A 317 CD1 CD2 REMARK 470 GLU A 318 CD OE1 OE2 REMARK 470 SER A 319 OG REMARK 470 LEU A 322 CD1 CD2 REMARK 470 ARG A 323 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 GLU A 385 OE1 OE2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 PHE A 406 CD1 CE1 CE2 CZ REMARK 470 LEU A 411 CD1 CD2 REMARK 470 LYS A 422 NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 SER A 439 OG REMARK 470 ARG A 441 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 443 CD1 REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 449 OD1 OD2 REMARK 470 GLN A 453 CG CD OE1 NE2 REMARK 470 GLU A 454 CG CD OE1 OE2 REMARK 470 LYS A 463 CE NZ REMARK 470 GLU A 470 CD OE1 OE2 REMARK 470 LYS A 521 NZ REMARK 470 THR A 534 OG1 CG2 REMARK 470 VAL A 536 CG1 CG2 REMARK 470 VAL A 537 CG1 CG2 REMARK 470 ARG A 538 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 557 CD CE NZ REMARK 470 ARG A 568 CZ NH1 NH2 REMARK 470 GLU A 569 CD OE1 OE2 REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT T 10 O3' DT T 10 C3' -0.043 REMARK 500 DC P 1 O3' DC P 1 C3' -0.047 REMARK 500 DA P 2 O3' DA P 2 C3' -0.045 REMARK 500 DG D 1 P DG D 1 OP3 -0.131 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG T 2 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DT T 7 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC T 9 O5' - P - OP1 ANGL. DEV. = -10.1 DEGREES REMARK 500 DG T 11 OP1 - P - OP2 ANGL. DEV. = 15.7 DEGREES REMARK 500 DG T 11 O5' - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 DG P 3 OP1 - P - OP2 ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 415 -136.34 -108.42 REMARK 500 ARG A 438 -43.03 -137.66 REMARK 500 GLU A 572 30.76 -95.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH P 132 DISTANCE = 6.22 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EDO A 608 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 606 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 O REMARK 620 2 ILE A 302 O 103.2 REMARK 620 3 ILE A 305 O 88.3 93.5 REMARK 620 4 HOH A 819 O 78.9 165.4 72.0 REMARK 620 5 DC D 3 OP1 155.4 101.1 86.7 76.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 339 O REMARK 620 2 SER A 339 O 6.0 REMARK 620 3 ILE A 341 O 99.0 93.9 REMARK 620 4 ALA A 344 O 90.2 86.6 84.6 REMARK 620 5 HOH A 808 O 88.9 92.6 97.8 177.6 REMARK 620 6 DA P 5 OP1 163.2 167.8 97.8 91.1 89.2 REMARK 620 7 HOH P 104 O 72.7 77.2 166.8 85.2 92.4 90.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 366 OE1 REMARK 620 2 HOH A 703 O 72.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 427 OD1 10.8 REMARK 620 3 ASP A 429 OD2 92.8 100.0 REMARK 620 4 TTP A 601 O1A 97.5 88.5 96.9 REMARK 620 5 TTP A 601 O1B 172.5 170.5 89.5 89.4 REMARK 620 6 TTP A 601 O2G 88.5 82.8 169.5 93.3 88.0 REMARK 620 7 PPV A 607 O21 157.2 159.5 95.9 102.4 15.4 79.3 REMARK 620 8 PPV A 607 O22 94.1 86.4 172.1 78.5 84.1 15.3 79.1 REMARK 620 9 HOH A 721 O 86.7 95.0 88.6 172.9 86.1 81.1 72.4 95.6 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 427 OD2 42.9 REMARK 620 3 ASP A 429 OD1 81.1 118.0 REMARK 620 4 ASP A 490 OD2 145.9 113.3 99.4 REMARK 620 5 TTP A 601 O1A 57.0 83.0 86.0 156.9 REMARK 620 6 DC P 6 O3' 126.4 122.2 111.0 85.6 71.6 REMARK 620 7 DT P 7 OP1 68.5 89.6 91.9 144.9 12.2 59.4 REMARK 620 8 HOH P 110 O 90.1 59.4 165.6 94.3 79.6 65.4 74.1 REMARK 620 N 1 2 3 4 5 6 7 DBREF 7M44 A 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 7M44 T 1 11 PDB 7M44 7M44 1 11 DBREF 7M44 P 1 7 PDB 7M44 7M44 1 7 DBREF 7M44 D 1 4 PDB 7M44 7M44 1 4 SEQADV 7M44 LYS A 463 UNP Q9UGP5 SER 463 CONFLICT SEQADV 7M44 GLY A 464 UNP Q9UGP5 GLN 464 CONFLICT SEQADV 7M44 A UNP Q9UGP5 GLU 466 DELETION SEQADV 7M44 A UNP Q9UGP5 ASN 467 DELETION SEQADV 7M44 A UNP Q9UGP5 GLY 468 DELETION SEQADV 7M44 A UNP Q9UGP5 GLN 469 DELETION SEQADV 7M44 A UNP Q9UGP5 GLN 470 DELETION SEQADV 7M44 THR A 471 UNP Q9UGP5 GLN 471 CONFLICT SEQRES 1 A 329 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 A 329 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 A 329 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 A 329 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 A 329 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 A 329 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 A 329 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 A 329 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 A 329 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 A 329 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 A 329 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 A 329 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 A 329 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 A 329 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 A 329 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 A 329 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 A 329 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 A 329 LYS GLY GLU THR LYS TYR LEU GLY VAL CYS ARG LEU PRO SEQRES 19 A 329 GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE ILE VAL SEQRES 20 A 329 VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU TYR PHE SEQRES 21 A 329 THR GLY SER ALA HIS PHE ASN ARG SER MET ARG ALA LEU SEQRES 22 A 329 ALA LYS THR LYS GLY MET SER LEU SER GLU HIS ALA LEU SEQRES 23 A 329 SER THR ALA VAL VAL ARG ASN THR HIS GLY CYS LYS VAL SEQRES 24 A 329 GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU LYS ASP SEQRES 25 A 329 VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU PRO ALA SEQRES 26 A 329 GLU ARG ASP TRP SEQRES 1 T 11 DC DG DG DC DA DG DT DA DC DT DG SEQRES 1 P 7 DC DA DG DT DA DC DT SEQRES 1 D 4 DG DC DC DG HET TTP A 601 29 HET MG A 602 1 HET MG A 603 1 HET NA A 604 1 HET NA A 605 1 HET NA A 606 1 HET PPV A 607 9 HET EDO A 608 3 HET EDO A 609 4 HET EDO A 610 4 HET EDO A 611 4 HET EDO A 612 4 HET EDO A 613 4 HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM PPV PYROPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 TTP C10 H17 N2 O14 P3 FORMUL 6 MG 2(MG 2+) FORMUL 8 NA 3(NA 1+) FORMUL 11 PPV H4 O7 P2 FORMUL 12 EDO 6(C2 H6 O2) FORMUL 18 HOH *231(H2 O) HELIX 1 AA1 ASN A 253 GLN A 270 1 18 HELIX 2 AA2 ASP A 272 SER A 288 1 17 HELIX 3 AA3 SER A 295 ILE A 302 1 8 HELIX 4 AA4 GLY A 306 GLY A 320 1 15 HELIX 5 AA5 LEU A 322 ILE A 328 5 7 HELIX 6 AA6 SER A 331 ASN A 340 1 10 HELIX 7 AA7 GLY A 345 GLN A 355 1 11 HELIX 8 AA8 SER A 359 ALA A 367 1 9 HELIX 9 AA9 THR A 370 HIS A 379 1 10 HELIX 10 AB1 HIS A 379 LEU A 384 1 6 HELIX 11 AB2 ARG A 389 ASN A 407 1 19 HELIX 12 AB3 CYS A 415 ARG A 420 1 6 HELIX 13 AB4 ILE A 443 GLU A 454 1 12 HELIX 14 AB5 PRO A 495 SER A 497 5 3 HELIX 15 AB6 GLU A 498 GLY A 508 1 11 HELIX 16 AB7 SER A 509 LYS A 523 1 15 HELIX 17 AB8 THR A 555 LEU A 563 1 9 HELIX 18 AB9 GLU A 569 ASP A 574 5 6 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 ALA A 414 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 AA2 5 ARG A 487 VAL A 493 1 O ILE A 492 N ILE A 432 SHEET 4 AA2 5 LYS A 472 CYS A 477 -1 N CYS A 477 O ARG A 487 SHEET 5 AA2 5 LEU A 457 LYS A 463 -1 N LEU A 461 O LEU A 474 SHEET 1 AA3 3 MET A 525 LEU A 527 0 SHEET 2 AA3 3 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 3 AA3 3 ARG A 549 LEU A 551 -1 O LEU A 551 N LEU A 532 LINK O CYS A 300 NA NA A 606 1555 1555 2.69 LINK O ILE A 302 NA NA A 606 1555 1555 2.33 LINK O ILE A 305 NA NA A 606 1555 1555 2.85 LINK O ASER A 339 NA NA A 604 1555 1555 2.43 LINK O BSER A 339 NA NA A 604 1555 1555 2.30 LINK O ILE A 341 NA NA A 604 1555 1555 2.46 LINK O ALA A 344 NA NA A 604 1555 1555 2.29 LINK OE1 GLN A 366 NA NA A 605 1555 1555 2.86 LINK OD1AASP A 427 MG MG A 602 1555 1555 2.08 LINK OD1BASP A 427 MG MG A 602 1555 1555 1.94 LINK OD1BASP A 427 MG MG A 603 1555 1555 2.98 LINK OD2AASP A 427 MG MG A 603 1555 1555 2.25 LINK OD2 ASP A 429 MG MG A 602 1555 1555 2.04 LINK OD1 ASP A 429 MG MG A 603 1555 1555 2.15 LINK OD2 ASP A 490 MG MG A 603 1555 1555 2.31 LINK O1AATTP A 601 MG MG A 602 1555 1555 1.88 LINK O1BATTP A 601 MG MG A 602 1555 1555 2.06 LINK O2GATTP A 601 MG MG A 602 1555 1555 2.14 LINK O1AATTP A 601 MG MG A 603 1555 1555 2.55 LINK MG MG A 602 O21BPPV A 607 1555 1555 2.30 LINK MG MG A 602 O22BPPV A 607 1555 1555 2.35 LINK MG MG A 602 O HOH A 721 1555 1555 2.06 LINK MG MG A 602 OP1B DT P 7 1555 1555 2.43 LINK MG MG A 603 O3'B DC P 6 1555 1555 2.64 LINK MG MG A 603 OP1B DT P 7 1555 1555 2.33 LINK MG MG A 603 O BHOH P 110 1555 1555 2.32 LINK NA NA A 604 O HOH A 808 1555 1555 2.43 LINK NA NA A 604 OP1 DA P 5 1555 1555 2.39 LINK NA NA A 604 O HOH P 104 1555 1555 2.66 LINK NA NA A 605 O HOH A 703 1555 1555 3.13 LINK NA NA A 606 O HOH A 819 1555 1555 2.12 LINK NA NA A 606 OP1 DC D 3 1555 1555 3.10 CISPEP 1 GLY A 508 SER A 509 0 1.50 CRYST1 56.042 62.356 140.228 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017844 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016037 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007131 0.00000