HEADER REPLICATION 21-MAR-21 7M46 TITLE DNA POLYMERASE LAMBDA, TTP:AT MG2+ PRODUCT STATE TERNARY COMPLEX, 5 TITLE 2 MIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LAMBDA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POL LAMBDA,DNA POLYMERASE BETA-2,POL BETA2,DNA POLYMERASE COMPND 5 KAPPA; COMPND 6 EC: 2.7.7.7,4.2.99.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3'); COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(*CP*AP*GP*TP*AP*CP*T)-3'); COMPND 15 CHAIN: P; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'-D(P*GP*CP*CP*G)-3'); COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 MOL_ID: 4; SOURCE 19 SYNTHETIC: YES; SOURCE 20 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 21 ORGANISM_TAXID: 32630 KEYWDS TIME-LAPSE CRYSTALLOGRAPHY, DNA POLYMERASE LAMBDA, DOUBLE STRAND KEYWDS 2 BREAK REPAIR, DNA SYNTHESIS FIDELITY, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR J.A.JAMSEN,S.H.WILSON REVDAT 2 18-OCT-23 7M46 1 REMARK REVDAT 1 06-JUL-22 7M46 0 JRNL AUTH J.A.JAMSEN,D.D.SHOCK,S.H.WILSON JRNL TITL WATCHING RIGHT AND WRONG NUCLEOTIDE INSERTION CAPTURES JRNL TITL 2 HIDDEN POLYMERASE FIDELITY CHECKPOINTS. JRNL REF NAT COMMUN V. 13 3193 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35680862 JRNL DOI 10.1038/S41467-022-30141-W REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.15.2-3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 38262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.6200 - 4.5000 1.00 3002 151 0.1861 0.1909 REMARK 3 2 4.5000 - 3.5800 0.99 2858 153 0.1571 0.2117 REMARK 3 3 3.5800 - 3.1300 1.00 2833 139 0.1810 0.1976 REMARK 3 4 3.1300 - 2.8400 0.97 2754 145 0.2150 0.2358 REMARK 3 5 2.8400 - 2.6400 0.97 2728 146 0.2064 0.2451 REMARK 3 6 2.6400 - 2.4800 0.99 2795 148 0.2061 0.2300 REMARK 3 7 2.4800 - 2.3600 1.00 2780 138 0.2023 0.2568 REMARK 3 8 2.3600 - 2.2600 1.00 2769 143 0.1826 0.1889 REMARK 3 9 2.2600 - 2.1700 1.00 2782 152 0.1758 0.2143 REMARK 3 10 2.1700 - 2.1000 1.00 2810 129 0.1824 0.2380 REMARK 3 11 2.1000 - 2.0300 1.00 2781 142 0.1837 0.2429 REMARK 3 12 2.0300 - 1.9700 1.00 2774 150 0.2127 0.2672 REMARK 3 13 1.9700 - 1.9200 0.99 2719 141 0.2470 0.2668 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 251 THROUGH 325) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0893 -30.2445 24.7865 REMARK 3 T TENSOR REMARK 3 T11: 0.5367 T22: 0.7399 REMARK 3 T33: 0.5657 T12: 0.1557 REMARK 3 T13: -0.0908 T23: 0.0589 REMARK 3 L TENSOR REMARK 3 L11: 0.4727 L22: 0.8734 REMARK 3 L33: 0.6302 L12: -0.4570 REMARK 3 L13: -0.3786 L23: 0.0452 REMARK 3 S TENSOR REMARK 3 S11: -0.1805 S12: -0.5932 S13: -0.0061 REMARK 3 S21: 0.4346 S22: 0.2237 S23: -0.5985 REMARK 3 S31: 0.5731 S32: 0.7322 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 326 THROUGH 534) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6735 -6.0600 9.3942 REMARK 3 T TENSOR REMARK 3 T11: 0.2550 T22: 0.2354 REMARK 3 T33: 0.2727 T12: 0.0212 REMARK 3 T13: -0.0241 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 2.2526 L22: 1.3415 REMARK 3 L33: 1.5865 L12: 0.1131 REMARK 3 L13: -0.8357 L23: 0.3380 REMARK 3 S TENSOR REMARK 3 S11: 0.1040 S12: -0.1443 S13: 0.2558 REMARK 3 S21: 0.0447 S22: 0.0242 S23: -0.0228 REMARK 3 S31: -0.1730 S32: 0.0736 S33: 0.0108 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 535 THROUGH 575) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5820 -4.3875 30.9908 REMARK 3 T TENSOR REMARK 3 T11: 0.4997 T22: 0.6501 REMARK 3 T33: 0.4470 T12: -0.0212 REMARK 3 T13: -0.0105 T23: -0.1548 REMARK 3 L TENSOR REMARK 3 L11: 2.3784 L22: 0.7402 REMARK 3 L33: 1.2687 L12: -0.5446 REMARK 3 L13: 0.1906 L23: 0.0586 REMARK 3 S TENSOR REMARK 3 S11: 0.1501 S12: -0.8209 S13: -0.4151 REMARK 3 S21: 0.1878 S22: -0.0316 S23: 0.2229 REMARK 3 S31: -0.0948 S32: 0.2775 S33: 0.0109 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0085 -26.1358 26.5853 REMARK 3 T TENSOR REMARK 3 T11: 0.5225 T22: 0.5588 REMARK 3 T33: 0.4025 T12: -0.0049 REMARK 3 T13: 0.0478 T23: 0.1935 REMARK 3 L TENSOR REMARK 3 L11: 0.0204 L22: 0.0328 REMARK 3 L33: 0.0050 L12: -0.0000 REMARK 3 L13: 0.0102 L23: 0.0022 REMARK 3 S TENSOR REMARK 3 S11: 0.2098 S12: -0.1482 S13: -0.0655 REMARK 3 S21: -0.1212 S22: 0.2496 S23: 0.4680 REMARK 3 S31: 0.2818 S32: -0.3149 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'T' AND RESID 5 THROUGH 11) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1897 -8.8891 11.8155 REMARK 3 T TENSOR REMARK 3 T11: 0.3158 T22: 0.2518 REMARK 3 T33: 0.3104 T12: -0.0066 REMARK 3 T13: -0.0080 T23: -0.0466 REMARK 3 L TENSOR REMARK 3 L11: 0.1848 L22: 0.2308 REMARK 3 L33: 0.1401 L12: 0.1148 REMARK 3 L13: 0.0203 L23: 0.1629 REMARK 3 S TENSOR REMARK 3 S11: 0.0951 S12: -0.0135 S13: -0.0017 REMARK 3 S21: 0.0735 S22: -0.0484 S23: 0.2356 REMARK 3 S31: 0.1783 S32: 0.1850 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'P' AND RESID 1 THROUGH 7) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2734 -14.1586 9.7374 REMARK 3 T TENSOR REMARK 3 T11: 0.3108 T22: 0.2794 REMARK 3 T33: 0.2402 T12: 0.0044 REMARK 3 T13: -0.0011 T23: -0.0398 REMARK 3 L TENSOR REMARK 3 L11: 0.1063 L22: 0.1474 REMARK 3 L33: 0.1393 L12: -0.1083 REMARK 3 L13: -0.0311 L23: 0.0529 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: -0.2328 S13: -0.0606 REMARK 3 S21: 0.0974 S22: -0.0398 S23: -0.0827 REMARK 3 S31: -0.1786 S32: -0.1340 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 4) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5092 -28.6879 29.3669 REMARK 3 T TENSOR REMARK 3 T11: 0.5837 T22: 0.5059 REMARK 3 T33: 0.3128 T12: -0.0217 REMARK 3 T13: 0.0732 T23: 0.0607 REMARK 3 L TENSOR REMARK 3 L11: 0.6082 L22: 0.5457 REMARK 3 L33: 2.0036 L12: 0.1694 REMARK 3 L13: 0.3421 L23: 1.0456 REMARK 3 S TENSOR REMARK 3 S11: 0.4630 S12: -0.6793 S13: -0.2709 REMARK 3 S21: 0.6333 S22: 0.2786 S23: 0.1562 REMARK 3 S31: 0.3020 S32: 0.3496 S33: 0.1510 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7M46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1001310091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38559 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.59100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 3UPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80-95MM BICINE PH 8.3, 0.3M NA-K REMARK 280 TARTRATE, 18-22.5% POLYPURE PEG, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.13150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.72600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.40400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.72600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.13150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.40400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T, P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 242 REMARK 465 GLN A 243 REMARK 465 PRO A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 GLN A 247 REMARK 465 LYS A 248 REMARK 465 ALA A 249 REMARK 465 THR A 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 252 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 ILE A 256 CD1 REMARK 470 LYS A 259 CD CE NZ REMARK 470 GLU A 261 CD OE1 OE2 REMARK 470 LEU A 263 CD1 CD2 REMARK 470 LYS A 265 CD CE NZ REMARK 470 LYS A 273 CD CE NZ REMARK 470 ASN A 284 OD1 ND2 REMARK 470 LEU A 286 CD1 CD2 REMARK 470 LYS A 287 CD CE NZ REMARK 470 PHE A 289 CE1 CE2 CZ REMARK 470 LYS A 291 CE NZ REMARK 470 GLN A 297 CB CG CD OE1 NE2 REMARK 470 ILE A 302 CD1 REMARK 470 LYS A 307 CD CE NZ REMARK 470 ARG A 308 CZ NH1 NH2 REMARK 470 ILE A 313 CD1 REMARK 470 ILE A 314 CD1 REMARK 470 LEU A 322 CG CD1 CD2 REMARK 470 ARG A 323 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 GLU A 385 OE1 OE2 REMARK 470 GLU A 390 OE1 OE2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 PHE A 406 CE1 CE2 CZ REMARK 470 LEU A 411 CD1 CD2 REMARK 470 LYS A 422 CE NZ REMARK 470 ARG A 438 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 441 CD NE CZ NH1 NH2 REMARK 470 ILE A 443 CD1 REMARK 470 ARG A 446 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 449 OD1 OD2 REMARK 470 GLN A 453 CG CD OE1 NE2 REMARK 470 GLU A 454 CD OE1 OE2 REMARK 470 LYS A 463 NZ REMARK 470 GLU A 470 CD OE1 OE2 REMARK 470 LYS A 521 NZ REMARK 470 THR A 534 OG1 CG2 REMARK 470 ALA A 535 CB REMARK 470 VAL A 536 CG1 CG2 REMARK 470 THR A 540 OG1 CG2 REMARK 470 HIS A 541 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 544 CG CD CE NZ REMARK 470 VAL A 545 CG1 CG2 REMARK 470 LYS A 557 CD CE NZ REMARK 470 ARG A 568 NH1 NH2 REMARK 470 GLU A 569 CD OE1 OE2 REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 1 P DG D 1 OP3 -0.126 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 309 CA - CB - CG ANGL. DEV. = 22.1 DEGREES REMARK 500 DG T 2 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 DC T 4 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT T 7 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 415 -136.51 -107.87 REMARK 500 ARG A 438 -36.30 -141.72 REMARK 500 ASN A 539 -167.64 -106.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH P 129 DISTANCE = 6.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 300 O REMARK 620 2 ILE A 302 O 95.6 REMARK 620 3 ILE A 305 O 74.8 79.0 REMARK 620 4 DC D 3 OP1 154.4 99.2 87.6 REMARK 620 5 HOH D 103 O 74.0 146.8 67.9 82.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 339 O REMARK 620 2 SER A 339 O 4.7 REMARK 620 3 ILE A 341 O 99.0 94.9 REMARK 620 4 ALA A 344 O 89.7 86.9 85.5 REMARK 620 5 HOH A 726 O 90.0 92.7 94.8 179.6 REMARK 620 6 DA P 5 OP1 162.0 165.6 99.0 90.4 89.9 REMARK 620 7 HOH P 109 O 72.2 75.8 166.5 84.3 95.4 89.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 366 OE1 REMARK 620 2 HOH A 848 O 79.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 429 OD2 94.6 REMARK 620 3 PPV A 610 O11 160.8 92.1 REMARK 620 4 PPV A 610 O22 90.1 168.7 80.2 REMARK 620 5 HOH A 701 O 85.8 96.8 75.6 73.3 REMARK 620 6 DT P 7 OP1 94.3 97.7 102.5 92.2 165.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 OD1 REMARK 620 2 ASP A 429 OD1 73.0 REMARK 620 3 ASP A 490 OD2 152.0 105.4 REMARK 620 4 HOH A 767 O 77.5 150.6 100.3 REMARK 620 5 HOH A 824 O 73.2 88.7 78.9 82.2 REMARK 620 6 DC P 6 O3' 119.3 109.2 88.0 85.7 160.2 REMARK 620 7 DT P 7 OP1 63.3 84.3 144.6 83.1 136.1 57.0 REMARK 620 N 1 2 3 4 5 6 DBREF 7M46 A 242 575 UNP Q9UGP5 DPOLL_HUMAN 242 575 DBREF 7M46 T 1 11 PDB 7M46 7M46 1 11 DBREF 7M46 P 1 7 PDB 7M46 7M46 1 7 DBREF 7M46 D 1 4 PDB 7M46 7M46 1 4 SEQADV 7M46 LYS A 463 UNP Q9UGP5 SER 463 CONFLICT SEQADV 7M46 GLY A 464 UNP Q9UGP5 GLN 464 CONFLICT SEQADV 7M46 A UNP Q9UGP5 GLU 466 DELETION SEQADV 7M46 A UNP Q9UGP5 ASN 467 DELETION SEQADV 7M46 A UNP Q9UGP5 GLY 468 DELETION SEQADV 7M46 A UNP Q9UGP5 GLN 469 DELETION SEQADV 7M46 A UNP Q9UGP5 GLN 470 DELETION SEQADV 7M46 THR A 471 UNP Q9UGP5 GLN 471 CONFLICT SEQADV 7M46 ALA A 543 UNP Q9UGP5 CYS 543 ENGINEERED MUTATION SEQRES 1 A 329 ALA GLN PRO SER SER GLN LYS ALA THR ASN HIS ASN LEU SEQRES 2 A 329 HIS ILE THR GLU LYS LEU GLU VAL LEU ALA LYS ALA TYR SEQRES 3 A 329 SER VAL GLN GLY ASP LYS TRP ARG ALA LEU GLY TYR ALA SEQRES 4 A 329 LYS ALA ILE ASN ALA LEU LYS SER PHE HIS LYS PRO VAL SEQRES 5 A 329 THR SER TYR GLN GLU ALA CYS SER ILE PRO GLY ILE GLY SEQRES 6 A 329 LYS ARG MET ALA GLU LYS ILE ILE GLU ILE LEU GLU SER SEQRES 7 A 329 GLY HIS LEU ARG LYS LEU ASP HIS ILE SER GLU SER VAL SEQRES 8 A 329 PRO VAL LEU GLU LEU PHE SER ASN ILE TRP GLY ALA GLY SEQRES 9 A 329 THR LYS THR ALA GLN MET TRP TYR GLN GLN GLY PHE ARG SEQRES 10 A 329 SER LEU GLU ASP ILE ARG SER GLN ALA SER LEU THR THR SEQRES 11 A 329 GLN GLN ALA ILE GLY LEU LYS HIS TYR SER ASP PHE LEU SEQRES 12 A 329 GLU ARG MET PRO ARG GLU GLU ALA THR GLU ILE GLU GLN SEQRES 13 A 329 THR VAL GLN LYS ALA ALA GLN ALA PHE ASN SER GLY LEU SEQRES 14 A 329 LEU CYS VAL ALA CYS GLY SER TYR ARG ARG GLY LYS ALA SEQRES 15 A 329 THR CYS GLY ASP VAL ASP VAL LEU ILE THR HIS PRO ASP SEQRES 16 A 329 GLY ARG SER HIS ARG GLY ILE PHE SER ARG LEU LEU ASP SEQRES 17 A 329 SER LEU ARG GLN GLU GLY PHE LEU THR ASP ASP LEU VAL SEQRES 18 A 329 LYS GLY GLU THR LYS TYR LEU GLY VAL CYS ARG LEU PRO SEQRES 19 A 329 GLY PRO GLY ARG ARG HIS ARG ARG LEU ASP ILE ILE VAL SEQRES 20 A 329 VAL PRO TYR SER GLU PHE ALA CYS ALA LEU LEU TYR PHE SEQRES 21 A 329 THR GLY SER ALA HIS PHE ASN ARG SER MET ARG ALA LEU SEQRES 22 A 329 ALA LYS THR LYS GLY MET SER LEU SER GLU HIS ALA LEU SEQRES 23 A 329 SER THR ALA VAL VAL ARG ASN THR HIS GLY ALA LYS VAL SEQRES 24 A 329 GLY PRO GLY ARG VAL LEU PRO THR PRO THR GLU LYS ASP SEQRES 25 A 329 VAL PHE ARG LEU LEU GLY LEU PRO TYR ARG GLU PRO ALA SEQRES 26 A 329 GLU ARG ASP TRP SEQRES 1 T 11 DC DG DG DC DA DG DT DA DC DT DG SEQRES 1 P 7 DC DA DG DT DA DC DT SEQRES 1 D 4 DG DC DC DG HET MG A 601 1 HET NA A 602 1 HET NA A 603 1 HET NA A 604 1 HET NA A 605 1 HET EDO A 606 4 HET EDO A 607 4 HET EDO A 608 4 HET EDO A 609 4 HET PPV A 610 9 HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PPV PYROPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 5 MG MG 2+ FORMUL 6 NA 4(NA 1+) FORMUL 10 EDO 4(C2 H6 O2) FORMUL 14 PPV H4 O7 P2 FORMUL 15 HOH *247(H2 O) HELIX 1 AA1 ASN A 253 GLN A 270 1 18 HELIX 2 AA2 ASP A 272 PHE A 289 1 18 HELIX 3 AA3 SER A 295 ILE A 302 1 8 HELIX 4 AA4 GLY A 306 GLY A 320 1 15 HELIX 5 AA5 LEU A 322 ILE A 328 5 7 HELIX 6 AA6 SER A 331 ASN A 340 1 10 HELIX 7 AA7 GLY A 345 GLN A 355 1 11 HELIX 8 AA8 SER A 359 ALA A 367 1 9 HELIX 9 AA9 THR A 370 HIS A 379 1 10 HELIX 10 AB1 HIS A 379 LEU A 384 1 6 HELIX 11 AB2 ARG A 389 ASN A 407 1 19 HELIX 12 AB3 CYS A 415 ARG A 420 1 6 HELIX 13 AB4 ILE A 443 GLU A 454 1 12 HELIX 14 AB5 PRO A 495 SER A 497 5 3 HELIX 15 AB6 GLU A 498 GLY A 508 1 11 HELIX 16 AB7 SER A 509 LYS A 523 1 15 HELIX 17 AB8 THR A 555 LEU A 563 1 9 HELIX 18 AB9 GLU A 569 ASP A 574 5 6 SHEET 1 AA1 2 MET A 387 PRO A 388 0 SHEET 2 AA1 2 THR A 424 CYS A 425 -1 O CYS A 425 N MET A 387 SHEET 1 AA2 5 LEU A 411 ALA A 414 0 SHEET 2 AA2 5 VAL A 428 THR A 433 -1 O LEU A 431 N VAL A 413 SHEET 3 AA2 5 ARG A 487 VAL A 493 1 O ILE A 492 N ILE A 432 SHEET 4 AA2 5 LYS A 472 CYS A 477 -1 N TYR A 473 O ILE A 491 SHEET 5 AA2 5 LEU A 457 LYS A 463 -1 N THR A 458 O VAL A 476 SHEET 1 AA3 3 MET A 525 LEU A 527 0 SHEET 2 AA3 3 LEU A 532 THR A 534 -1 O SER A 533 N SER A 526 SHEET 3 AA3 3 ARG A 549 LEU A 551 -1 O LEU A 551 N LEU A 532 SHEET 1 AA4 2 VAL A 537 ARG A 538 0 SHEET 2 AA4 2 LYS A 544 GLY A 546 -1 O VAL A 545 N VAL A 537 LINK O CYS A 300 NA NA A 604 1555 1555 2.85 LINK O ILE A 302 NA NA A 604 1555 1555 2.18 LINK O ILE A 305 NA NA A 604 1555 1555 3.18 LINK O ASER A 339 NA NA A 602 1555 1555 2.38 LINK O BSER A 339 NA NA A 602 1555 1555 2.28 LINK O ILE A 341 NA NA A 602 1555 1555 2.44 LINK O ALA A 344 NA NA A 602 1555 1555 2.32 LINK OE1 GLN A 366 NA NA A 605 1555 1555 3.18 LINK OD1 ASP A 427 MG MG A 601 1555 1555 1.98 LINK OD1 ASP A 427 NA NA A 603 1555 1555 3.02 LINK OD2 ASP A 429 MG MG A 601 1555 1555 1.98 LINK OD1 ASP A 429 NA NA A 603 1555 1555 2.14 LINK OD2 ASP A 490 NA NA A 603 1555 1555 2.38 LINK MG MG A 601 O11 PPV A 610 1555 1555 2.10 LINK MG MG A 601 O22 PPV A 610 1555 1555 2.25 LINK MG MG A 601 O HOH A 701 1555 1555 2.04 LINK MG MG A 601 OP1 DT P 7 1555 1555 1.99 LINK NA NA A 602 O HOH A 726 1555 1555 2.44 LINK NA NA A 602 OP1 DA P 5 1555 1555 2.35 LINK NA NA A 602 O HOH P 109 1555 1555 2.71 LINK NA NA A 603 O HOH A 767 1555 1555 2.53 LINK NA NA A 603 O HOH A 824 1555 1555 2.46 LINK NA NA A 603 O3' DC P 6 1555 1555 2.73 LINK NA NA A 603 OP1 DT P 7 1555 1555 2.44 LINK NA NA A 604 OP1 DC D 3 1555 1555 2.98 LINK NA NA A 604 O HOH D 103 1555 1555 2.18 LINK NA NA A 605 O HOH A 848 1555 1555 2.30 CISPEP 1 GLY A 508 SER A 509 0 4.90 CRYST1 56.263 62.808 139.452 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017774 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015922 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007171 0.00000